Wall clock time and date at job start Tue Mar 31 2020 21:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00010 * 2 1 4 4 C 1.52995 * 109.47361 * 270.00240 * 3 2 1 5 5 H 1.09000 * 109.47530 * 59.99400 * 4 3 2 6 6 O 1.42910 * 109.46854 * 299.99888 * 4 3 2 7 7 C 1.53001 * 109.47416 * 180.02562 * 4 3 2 8 8 N 1.46493 * 109.47086 * 184.99500 * 7 4 3 9 9 C 1.36945 * 119.99892 * 179.97438 * 8 7 4 10 10 H 1.08000 * 119.99422 * 359.72792 * 9 8 7 11 11 C 1.38811 * 120.00031 * 179.72716 * 9 8 7 12 12 N 1.31616 * 119.99707 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99814 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47389 * 59.99917 * 13 11 9 15 15 H 1.48501 * 109.47057 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47102 * 299.99569 * 13 11 9 17 17 C 1.34778 * 120.00040 * 180.02562 * 2 1 3 18 18 O 1.21275 * 120.00021 * 180.02562 * 17 2 1 19 19 C 1.50698 * 119.99925 * 359.97438 * 17 2 1 20 20 C 1.53004 * 109.46858 * 180.02562 * 19 17 2 21 21 C 1.53001 * 109.46879 * 180.02562 * 20 19 17 22 22 C 1.50703 * 109.47212 * 180.02562 * 21 20 19 23 23 C 1.38242 * 119.97059 * 269.73050 * 22 21 20 24 24 C 1.38203 * 120.02292 * 179.72299 * 23 22 21 25 25 C 1.38455 * 119.97325 * 0.57027 * 24 23 22 26 26 F 1.35100 * 120.02636 * 179.68435 * 25 24 23 27 27 C 1.38461 * 119.94889 * 359.70243 * 25 24 23 28 28 C 1.38193 * 119.97280 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.46816 * 90.00016 * 1 2 3 30 30 H 1.09006 * 109.47227 * 209.99426 * 1 2 3 31 31 H 1.08996 * 109.47331 * 329.99780 * 1 2 3 32 32 H 1.09000 * 109.47289 * 149.99492 * 3 2 1 33 33 H 1.09008 * 109.46897 * 29.99999 * 3 2 1 34 34 H 0.96698 * 113.99389 * 299.99879 * 6 4 3 35 35 H 1.08998 * 109.47065 * 64.99277 * 7 4 3 36 36 H 1.09001 * 109.46892 * 304.99541 * 7 4 3 37 37 H 0.97000 * 120.00738 * 359.73142 * 8 7 4 38 38 H 0.97004 * 119.99151 * 179.97438 * 12 11 9 39 39 H 1.09003 * 109.47644 * 300.00268 * 19 17 2 40 40 H 1.08998 * 109.47105 * 60.00513 * 19 17 2 41 41 H 1.08993 * 109.47064 * 299.99995 * 20 19 17 42 42 H 1.08996 * 109.47076 * 60.00842 * 20 19 17 43 43 H 1.09003 * 109.47634 * 300.00268 * 21 20 19 44 44 H 1.09002 * 109.47024 * 59.99994 * 21 20 19 45 45 H 1.07998 * 119.99035 * 359.97336 * 23 22 21 46 46 H 1.07999 * 120.01145 * 180.24753 * 24 23 22 47 47 H 1.07996 * 120.01289 * 179.97438 * 27 25 24 48 48 H 1.08004 * 119.98592 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 -1.4424 5 1 1.5001 1.8407 -1.9563 6 8 3.2248 0.7145 -2.1161 7 6 3.2180 3.0352 -1.4424 8 7 3.3580 3.5182 -2.8183 9 6 4.0123 4.6951 -3.0676 10 1 4.4213 5.2693 -2.2493 11 6 4.1499 5.1501 -4.3718 12 7 3.6511 4.4505 -5.3688 13 14 5.0431 6.7551 -4.7117 14 1 6.4396 6.6591 -4.2161 15 1 5.0530 7.0160 -6.1736 16 1 4.3461 7.8665 -4.0158 17 6 2.1389 -1.1672 -0.0005 18 8 3.3516 -1.1672 -0.0001 19 6 1.3854 -2.4723 -0.0005 20 6 2.3797 -3.6352 -0.0005 21 6 1.6147 -4.9602 -0.0012 22 6 2.5940 -6.1057 -0.0005 23 6 3.0393 -6.6342 -1.1978 24 6 3.9418 -7.6809 -1.1985 25 6 4.3908 -8.2079 0.0005 26 9 5.2681 -9.2354 0.0011 27 6 3.9397 -7.6815 1.1990 28 6 3.0416 -6.6311 1.1972 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 3.1499 1.1384 0.5139 33 1 1.6083 2.0284 0.5139 34 1 4.0873 0.5461 -1.7125 35 1 4.2062 2.8837 -1.0082 36 1 2.6710 3.7709 -0.8529 37 1 2.9903 3.0028 -3.5532 38 1 3.7469 4.7686 -6.2801 39 1 0.7590 -2.5303 0.8897 40 1 0.7585 -2.5299 -0.8903 41 1 3.0063 -3.5774 -0.8905 42 1 3.0062 -3.5775 0.8895 43 1 0.9877 -5.0183 0.8886 44 1 0.9883 -5.0177 -0.8914 45 1 2.6850 -6.2264 -2.1329 46 1 4.2927 -8.0910 -2.1340 47 1 4.2889 -8.0920 2.1349 48 1 2.6899 -6.2200 2.1320 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677116147.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:53 Heat of formation + Delta-G solvation = -130.651643 kcal Electronic energy + Delta-G solvation = -28127.053298 eV Core-core repulsion = 23902.276732 eV Total energy + Delta-G solvation = -4224.776566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.89957 -41.01049 -40.11172 -38.70228 -36.37286 -35.85351 -35.68485 -33.23266 -32.12949 -32.06045 -30.77737 -28.12976 -27.78342 -26.42999 -24.66105 -23.99243 -23.32747 -22.56750 -21.76601 -20.03730 -19.24447 -18.64207 -18.06351 -17.74821 -17.44949 -17.04305 -16.64537 -16.60514 -16.56166 -16.24153 -16.09564 -15.75234 -15.12403 -14.98065 -14.86163 -14.45813 -14.37476 -14.25202 -14.03499 -13.98798 -13.75977 -13.66495 -13.26131 -13.01303 -12.94520 -12.75264 -12.68893 -12.55642 -12.37478 -12.21749 -12.03673 -11.97449 -11.94684 -11.82671 -11.49839 -11.13749 -10.97645 -10.65877 -10.04654 -9.48991 -9.48283 -9.03162 -7.96042 -5.26257 0.16720 0.29735 1.45399 1.49597 1.55721 1.77560 2.13274 2.54826 2.62943 3.32047 3.34868 3.48952 3.69850 3.77448 3.79052 3.81002 3.98437 4.07527 4.14032 4.21673 4.31928 4.34395 4.37983 4.40952 4.48629 4.54023 4.66738 4.68789 4.75331 4.77732 4.84323 4.90626 4.93253 4.99999 5.03482 5.16358 5.18753 5.23122 5.24453 5.30429 5.44532 5.46871 5.58624 5.65307 5.96955 6.24569 6.51464 6.78417 7.30790 7.33403 8.06887 8.29985 9.27189 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015873 B = 0.001763 C = 0.001645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.552082 B =15875.854188 C =17016.689932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.613 5.613 3 C 0.094 3.906 4 C 0.096 3.904 5 H 0.089 0.911 6 O -0.566 6.566 7 C 0.123 3.877 8 N -0.741 5.741 9 C -0.251 4.251 10 H 0.077 0.923 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.979 3.021 14 H -0.279 1.279 15 H -0.295 1.295 16 H -0.273 1.273 17 C 0.504 3.496 18 O -0.583 6.583 19 C -0.129 4.129 20 C -0.093 4.093 21 C -0.072 4.072 22 C -0.094 4.094 23 C -0.097 4.097 24 C -0.162 4.162 25 C 0.064 3.936 26 F -0.154 7.154 27 C -0.158 4.158 28 C -0.091 4.091 29 H 0.054 0.946 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.074 0.926 33 H 0.112 0.888 34 H 0.375 0.625 35 H 0.019 0.981 36 H 0.041 0.959 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.146 0.854 46 H 0.142 0.858 47 H 0.147 0.853 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.209 -24.022 18.000 32.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.345 5.345 3 C -0.030 4.030 4 C 0.036 3.964 5 H 0.107 0.893 6 O -0.372 6.372 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.382 4.382 10 H 0.095 0.905 11 C -0.271 4.271 12 N -0.620 5.620 13 Si 0.807 3.193 14 H -0.205 1.205 15 H -0.221 1.221 16 H -0.199 1.199 17 C 0.295 3.705 18 O -0.463 6.463 19 C -0.168 4.168 20 C -0.132 4.132 21 C -0.109 4.109 22 C -0.094 4.094 23 C -0.114 4.114 24 C -0.180 4.180 25 C 0.045 3.955 26 F -0.133 7.133 27 C -0.177 4.177 28 C -0.109 4.109 29 H 0.073 0.927 30 H 0.121 0.879 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.130 0.870 34 H 0.222 0.778 35 H 0.036 0.964 36 H 0.059 0.941 37 H 0.205 0.795 38 H 0.060 0.940 39 H 0.144 0.856 40 H 0.128 0.872 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.118 0.882 44 H 0.107 0.893 45 H 0.163 0.837 46 H 0.160 0.840 47 H 0.165 0.835 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -11.008 -23.922 17.684 31.721 hybrid contribution 1.479 0.605 -0.664 1.731 sum -9.530 -23.317 17.020 30.400 Atomic orbital electron populations 1.22117 0.77031 1.05386 1.02723 1.47876 1.08411 1.05150 1.73094 1.22017 0.98885 0.86518 0.95567 1.22420 0.94255 0.86200 0.93543 0.89308 1.86503 1.33412 1.59436 1.57829 1.21454 0.97401 0.94696 0.86865 1.42463 1.67956 1.24594 1.03344 1.19647 1.27585 0.98514 0.92497 0.90474 1.25668 1.03048 1.02833 0.95527 1.69850 1.52291 1.41195 0.98698 0.85139 0.78485 0.79358 0.76314 1.20503 1.22103 1.19919 1.21434 0.87896 0.86710 0.74503 1.90648 1.16266 1.88002 1.51363 1.21743 0.99180 0.89484 1.06432 1.21228 0.97273 0.92563 1.02088 1.20631 0.95648 0.89489 1.05118 1.20248 0.98720 0.97539 0.92892 1.21227 0.95970 0.94931 0.99321 1.21366 1.00146 0.99127 0.97388 1.18057 0.93015 0.88656 0.95803 1.91461 1.67199 1.57070 1.97550 1.21394 1.00068 0.98991 0.97241 1.21242 0.95745 0.94703 0.99195 0.92699 0.87884 0.89514 0.90759 0.86963 0.77781 0.96358 0.94106 0.79471 0.93988 0.85604 0.87224 0.93700 0.92482 0.88242 0.89261 0.83659 0.84038 0.83502 0.82708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.79 10.29 127.77 1.31 2.10 16 2 N -0.61 -12.53 2.83 -846.77 -2.39 -14.93 16 3 C 0.09 2.30 5.19 86.38 0.45 2.75 16 4 C 0.10 3.20 3.27 30.59 0.10 3.30 16 5 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 6 O -0.57 -22.00 12.09 -140.62 -1.70 -23.70 16 7 C 0.12 4.96 5.90 86.38 0.51 5.47 16 8 N -0.74 -39.39 5.55 -343.46 -1.91 -41.30 16 9 C -0.25 -14.47 9.99 84.03 0.84 -13.63 16 10 H 0.08 4.22 7.83 -2.91 -0.02 4.19 16 11 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 12 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 13 Si 0.98 47.10 29.55 68.60 2.03 49.13 16 14 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 15 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 16 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 17 C 0.50 11.67 7.18 87.66 0.63 12.30 16 18 O -0.58 -18.81 14.35 5.35 0.08 -18.73 16 19 C -0.13 -1.67 4.25 29.85 0.13 -1.54 16 20 C -0.09 -1.42 4.49 30.60 0.14 -1.28 16 21 C -0.07 -0.66 5.34 29.85 0.16 -0.50 16 22 C -0.09 -1.25 5.13 -19.86 -0.10 -1.35 16 23 C -0.10 -1.43 9.70 22.26 0.22 -1.21 16 24 C -0.16 -2.71 10.03 22.31 0.22 -2.48 16 25 C 0.06 1.18 7.30 22.37 0.16 1.35 16 26 F -0.15 -3.22 17.27 44.97 0.78 -2.45 16 27 C -0.16 -2.39 10.03 22.31 0.22 -2.17 16 28 C -0.09 -1.15 9.70 22.26 0.22 -0.94 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.51 6.44 -2.38 -0.02 0.49 16 31 H 0.09 0.76 7.89 -2.39 -0.02 0.74 16 32 H 0.07 2.02 7.42 -2.39 -0.02 2.00 16 33 H 0.11 2.09 7.89 -2.38 -0.02 2.07 16 34 H 0.37 14.16 8.45 -74.06 -0.63 13.53 16 35 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.37 21.69 7.67 -92.71 -0.71 20.98 16 38 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.13 0.75 7.40 -2.39 -0.02 0.73 16 40 H 0.11 1.12 8.11 -2.39 -0.02 1.10 16 41 H 0.04 0.95 8.10 -2.39 -0.02 0.93 16 42 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 43 H 0.10 0.47 8.08 -2.39 -0.02 0.45 16 44 H 0.09 0.63 8.08 -2.39 -0.02 0.61 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 46 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 47 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 48 H 0.16 1.16 8.06 -2.91 -0.02 1.14 16 Total: -1.00 -79.40 403.88 2.47 -76.93 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: -0.37 Total: 38.31 kcal Atomic # 6 Polarization: -7.68 SS G_CDS: 5.67 Total: -2.01 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -4.02 Total: -117.48 kcal Atomic # 8 Polarization: -40.81 SS G_CDS: -1.62 Total: -42.43 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.78 Total: -2.45 kcal Atomic # 14 Polarization: 47.10 SS G_CDS: 2.03 Total: 49.13 kcal Total: -79.40 2.47 -76.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677116147.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.723 kcal (2) G-P(sol) polarization free energy of solvation -79.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds