Wall clock time and date at job start Tue Mar 31 2020 20:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47063 * 240.00410 * 2 1 3 5 5 C 1.50709 * 109.47142 * 64.99465 * 4 2 1 6 6 O 1.21280 * 119.99660 * 0.02562 * 5 4 2 7 7 N 1.34773 * 119.99817 * 179.97438 * 5 4 2 8 8 C 1.46499 * 120.00314 * 0.02562 * 7 5 4 9 9 C 1.46499 * 119.99799 * 179.97438 * 7 5 4 10 10 C 1.53008 * 109.46886 * 90.00373 * 9 7 5 11 11 H 1.08998 * 109.46968 * 305.00429 * 10 9 7 12 12 O 1.42901 * 109.46507 * 65.00031 * 10 9 7 13 13 C 1.53002 * 109.47280 * 184.99949 * 10 9 7 14 14 N 1.46496 * 109.47201 * 180.02562 * 13 10 9 15 15 C 1.36936 * 120.00085 * 179.97438 * 14 13 10 16 16 H 1.08001 * 119.99844 * 0.02562 * 15 14 13 17 17 C 1.38810 * 119.99819 * 179.97438 * 15 14 13 18 18 N 1.31618 * 120.00319 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47152 * 59.99901 * 19 17 15 21 21 H 1.48501 * 109.47116 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47185 * 300.00282 * 19 17 15 23 23 C 1.50696 * 109.47430 * 120.00564 * 2 1 3 24 24 C 1.38248 * 119.97128 * 239.99664 * 23 2 1 25 25 C 1.38196 * 120.02483 * 179.97438 * 24 23 2 26 26 C 1.38458 * 119.97492 * 0.02562 * 25 24 23 27 27 F 1.35104 * 120.02786 * 179.97438 * 26 25 24 28 28 C 1.38465 * 119.94675 * 0.24873 * 26 25 24 29 29 C 1.38197 * 119.97511 * 359.47283 * 28 26 25 30 30 H 1.09001 * 109.47287 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46818 * 299.99522 * 1 2 3 32 32 H 1.09001 * 109.47810 * 59.99492 * 1 2 3 33 33 H 1.08998 * 109.47740 * 184.99766 * 4 2 1 34 34 H 1.08999 * 109.47080 * 305.00066 * 4 2 1 35 35 H 1.08998 * 109.47389 * 89.99352 * 8 7 5 36 36 H 1.09000 * 109.46853 * 209.99887 * 8 7 5 37 37 H 1.09001 * 109.46744 * 329.98937 * 8 7 5 38 38 H 1.08997 * 109.47760 * 210.00211 * 9 7 5 39 39 H 1.08995 * 109.47293 * 330.00912 * 9 7 5 40 40 H 0.96699 * 114.00563 * 60.00678 * 12 10 9 41 41 H 1.09001 * 109.46831 * 300.00384 * 13 10 9 42 42 H 1.08996 * 109.46623 * 59.99963 * 13 10 9 43 43 H 0.97009 * 119.99991 * 0.02562 * 14 13 10 44 44 H 0.97005 * 120.00254 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.98881 * 0.02562 * 24 23 2 46 46 H 1.07995 * 120.01604 * 180.02562 * 25 24 23 47 47 H 1.08007 * 120.01064 * 179.75151 * 28 26 25 48 48 H 1.07994 * 119.98821 * 180.29814 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 1.6411 0.0572 -2.4767 6 8 1.0115 1.0875 -2.3632 7 7 1.9851 -0.3912 -3.7002 8 6 2.7462 -1.6354 -3.8372 9 6 1.5969 0.3651 -4.8933 10 6 2.6939 1.3753 -5.2360 11 1 2.8926 2.0042 -4.3682 12 8 3.8862 0.6777 -5.6018 13 6 2.2353 2.2493 -6.4051 14 7 3.2858 3.2160 -6.7336 15 6 3.0993 4.1093 -7.7546 16 1 2.1775 4.1014 -8.3173 17 6 4.0945 5.0257 -8.0654 18 7 5.2176 5.0356 -7.3793 19 14 3.8398 6.2447 -9.4577 20 1 2.6534 7.0888 -9.1657 21 1 5.0418 7.1071 -9.5867 22 1 3.6218 5.5070 -10.7280 23 6 2.0323 -0.7105 1.2303 24 6 2.8272 -0.0381 2.1400 25 6 3.2881 -0.6885 3.2689 26 6 2.9540 -2.0141 3.4885 27 9 3.4044 -2.6510 4.5915 28 6 2.1625 -2.6881 2.5739 29 6 1.6980 -2.0340 1.4486 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3635 0.5139 -0.8899 33 1 3.1262 -0.7994 -1.2058 34 1 1.6053 -1.7197 -1.2953 35 1 2.0569 -2.4754 -3.9232 36 1 3.3693 -1.5838 -4.7300 37 1 3.3788 -1.7728 -2.9602 38 1 1.4602 -0.3204 -5.7296 39 1 0.6635 0.8939 -4.7006 40 1 3.7830 0.0975 -6.3685 41 1 2.0365 1.6202 -7.2728 42 1 1.3258 2.7812 -6.1260 43 1 4.1139 3.2229 -6.2283 44 1 5.9133 5.6758 -7.5968 45 1 3.0874 0.9960 1.9687 46 1 3.9087 -0.1630 3.9796 47 1 1.9045 -3.7233 2.7421 48 1 1.0767 -2.5581 0.7375 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677138307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:41:59 Heat of formation + Delta-G solvation = -101.060100 kcal Electronic energy + Delta-G solvation = -28747.927179 eV Core-core repulsion = 24524.433799 eV Total energy + Delta-G solvation = -4223.493380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20985 -40.46274 -39.45782 -37.57482 -35.39898 -34.98721 -33.98783 -31.53003 -31.41101 -30.23836 -29.33618 -27.97951 -26.76972 -25.19408 -23.88028 -23.30926 -22.64300 -21.21393 -20.69587 -19.09890 -18.08221 -17.38519 -17.14209 -16.79355 -16.37471 -16.10001 -15.90842 -15.71049 -15.36765 -15.06581 -14.54171 -14.44856 -14.25806 -13.94115 -13.82617 -13.62106 -13.37929 -13.32310 -13.09379 -12.94849 -12.67231 -12.44893 -12.37222 -12.25907 -12.08972 -11.59765 -11.55461 -11.36315 -11.28223 -10.96368 -10.92302 -10.79122 -10.65752 -10.19929 -9.97340 -9.73809 -9.56752 -9.48465 -8.89627 -8.87099 -8.50582 -6.89753 -5.72528 -3.01993 0.76327 0.85511 2.57629 2.90036 3.21685 3.45630 3.49581 3.51142 3.90929 4.19963 4.28534 4.51208 4.57274 4.59971 4.66072 4.75233 4.80823 4.89248 4.96839 5.02565 5.03991 5.16857 5.22746 5.30210 5.35411 5.45606 5.53822 5.57702 5.59202 5.65104 5.68853 5.74558 5.77493 5.80781 5.84422 5.92084 6.01017 6.17303 6.24747 6.27007 6.45401 6.52528 6.55942 6.76519 7.29953 7.70160 8.02357 8.13693 8.45677 9.56900 10.15140 10.50957 11.49781 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.001894 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.135548 B =14778.542491 C =15210.365547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 H 0.091 0.909 4 C -0.131 4.131 5 C 0.511 3.489 6 O -0.533 6.533 7 N -0.608 5.608 8 C 0.079 3.921 9 C 0.086 3.914 10 C 0.087 3.913 11 H 0.100 0.900 12 O -0.551 6.551 13 C 0.126 3.874 14 N -0.725 5.725 15 C -0.243 4.243 16 H 0.069 0.931 17 C -0.013 4.013 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.083 4.083 24 C -0.085 4.085 25 C -0.151 4.151 26 C 0.090 3.910 27 F -0.143 7.143 28 C -0.152 4.152 29 C -0.086 4.086 30 H 0.049 0.951 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.366 0.634 41 H 0.019 0.981 42 H 0.027 0.973 43 H 0.389 0.611 44 H 0.256 0.744 45 H 0.135 0.865 46 H 0.135 0.865 47 H 0.134 0.866 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.584 -20.668 19.200 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.056 4.056 3 H 0.109 0.891 4 C -0.171 4.171 5 C 0.300 3.700 6 O -0.410 6.410 7 N -0.341 5.341 8 C -0.064 4.064 9 C -0.037 4.037 10 C 0.027 3.973 11 H 0.118 0.882 12 O -0.355 6.355 13 C -0.002 4.002 14 N -0.370 5.370 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.083 4.083 24 C -0.103 4.103 25 C -0.169 4.169 26 C 0.071 3.929 27 F -0.121 7.121 28 C -0.171 4.171 29 C -0.104 4.104 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.111 0.889 40 H 0.212 0.788 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.223 0.777 44 H 0.065 0.935 45 H 0.153 0.847 46 H 0.153 0.847 47 H 0.152 0.848 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.724 -19.727 19.678 28.914 hybrid contribution 0.134 0.169 -0.902 0.927 sum -7.589 -19.558 18.776 28.154 Atomic orbital electron populations 1.21970 0.93450 1.01636 1.03567 1.19908 0.96906 0.99445 0.89294 0.89088 1.21778 1.03093 0.99991 0.92268 1.20609 0.79308 0.85688 0.84436 1.90697 1.39969 1.24271 1.86099 1.47751 1.55409 1.24900 1.06032 1.21829 0.95655 0.85055 1.03848 1.22216 0.99615 0.95118 0.86755 1.22542 0.84469 0.91864 0.98472 0.88236 1.86618 1.34875 1.62471 1.51534 1.21216 0.93271 0.91899 0.93858 1.42229 1.17076 1.37501 1.40165 1.19178 1.00578 1.09325 1.08333 0.91327 1.24765 0.96466 0.99909 0.99826 1.69674 1.06697 1.39002 1.42473 0.86255 0.76802 0.81075 0.81948 1.21258 1.21667 1.21302 1.20004 0.97516 0.94185 0.96640 1.21030 0.96127 1.00328 0.92824 1.21171 1.02721 0.93346 0.99699 1.17751 0.98700 0.91510 0.84979 1.91499 1.87566 1.81985 1.51088 1.21138 0.99871 1.01013 0.95070 1.20877 0.98868 0.94090 0.96607 0.93200 0.92650 0.89970 0.88620 0.88944 0.92975 0.90184 0.91157 0.90275 0.88865 0.78756 0.96356 0.95549 0.77679 0.93460 0.84742 0.84726 0.84830 0.85045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.75 37.15 0.32 -1.01 16 2 C -0.04 -0.32 2.21 -91.78 -0.20 -0.52 16 3 H 0.09 0.93 7.69 -51.93 -0.40 0.53 16 4 C -0.13 -1.09 3.47 -27.88 -0.10 -1.19 16 5 C 0.51 6.14 7.39 -10.98 -0.08 6.06 16 6 O -0.53 -8.34 13.55 5.56 0.08 -8.26 16 7 N -0.61 -6.73 2.84 -181.57 -0.52 -7.24 16 8 C 0.08 0.61 10.06 59.85 0.60 1.21 16 9 C 0.09 1.09 5.06 -4.04 -0.02 1.06 16 10 C 0.09 1.43 3.30 -26.73 -0.09 1.35 16 11 H 0.10 1.93 8.14 -51.93 -0.42 1.51 16 12 O -0.55 -8.94 11.91 -35.23 -0.42 -9.36 16 13 C 0.13 2.54 5.92 -4.04 -0.02 2.52 16 14 N -0.72 -18.98 5.49 -59.91 -0.33 -19.31 16 15 C -0.24 -6.98 9.99 -15.06 -0.15 -7.13 16 16 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 17 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 18 N -0.93 -28.95 13.06 55.49 0.72 -28.23 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 C -0.08 -0.65 4.78 -104.62 -0.50 -1.15 16 24 C -0.09 -0.67 9.67 -39.59 -0.38 -1.05 16 25 C -0.15 -1.19 10.03 -39.52 -0.40 -1.59 16 26 C 0.09 0.77 7.30 -39.42 -0.29 0.48 16 27 F -0.14 -1.36 17.27 2.25 0.04 -1.32 16 28 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 29 C -0.09 -0.59 8.76 -39.59 -0.35 -0.94 16 30 H 0.05 0.37 7.39 -51.93 -0.38 -0.02 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.93 5.95 -51.93 -0.31 0.62 16 33 H 0.10 0.74 7.40 -51.93 -0.38 0.35 16 34 H 0.09 0.56 7.53 -51.93 -0.39 0.17 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.63 7.11 -51.93 -0.37 0.26 16 37 H 0.07 0.46 6.44 -51.93 -0.33 0.12 16 38 H 0.08 0.80 8.07 -51.93 -0.42 0.38 16 39 H 0.09 1.28 7.42 -51.93 -0.39 0.89 16 40 H 0.37 4.68 9.04 45.56 0.41 5.09 16 41 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.39 10.99 7.54 -40.82 -0.31 10.68 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.13 0.91 7.94 -52.49 -0.42 0.49 16 46 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 48 H 0.13 0.66 7.16 -52.49 -0.38 0.29 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -34.95 396.85 -8.18 -43.13 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -6.57 Total: 10.76 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -2.14 Total: -3.90 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.12 Total: -54.78 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.34 Total: -17.62 kcal Atomic # 9 Polarization: -1.36 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.95 -8.18 -43.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.933 kcal (2) G-P(sol) polarization free energy of solvation -34.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds