Wall clock time and date at job start Tue Mar 31 2020 20:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46506 * 120.00264 * 0.28128 * 7 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 10 10 C 1.53002 * 109.47088 * 89.99979 * 9 7 5 11 11 H 1.09005 * 109.46685 * 60.00344 * 10 9 7 12 12 O 1.42895 * 109.47316 * 300.00507 * 10 9 7 13 13 C 1.52995 * 109.47427 * 179.97438 * 10 9 7 14 14 N 1.46499 * 109.47472 * 185.00081 * 13 10 9 15 15 C 1.36937 * 120.00177 * 179.97438 * 14 13 10 16 16 H 1.07995 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00463 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46809 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47659 * 119.99879 * 19 17 15 22 22 H 1.48502 * 109.46988 * 240.00054 * 19 17 15 23 23 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 24 24 C 1.38247 * 119.97435 * 59.73228 * 23 2 1 25 25 C 1.38197 * 120.02650 * 179.72232 * 24 23 2 26 26 C 1.38462 * 119.97161 * 0.52291 * 25 24 23 27 27 F 1.35103 * 120.02585 * 179.72687 * 26 25 24 28 28 C 1.38461 * 119.94947 * 359.74429 * 26 25 24 29 29 C 1.38192 * 119.97564 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 31 31 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 35 35 H 1.08998 * 109.46921 * 89.99095 * 8 7 5 36 36 H 1.08994 * 109.46996 * 209.99677 * 8 7 5 37 37 H 1.09001 * 109.46578 * 329.99540 * 8 7 5 38 38 H 1.09001 * 109.47567 * 210.00057 * 9 7 5 39 39 H 1.09005 * 109.47076 * 330.00563 * 9 7 5 40 40 H 0.96693 * 114.00024 * 299.99568 * 12 10 9 41 41 H 1.09002 * 109.47498 * 305.00803 * 13 10 9 42 42 H 1.09005 * 109.47199 * 65.00294 * 13 10 9 43 43 H 0.97000 * 119.99716 * 0.02562 * 14 13 10 44 44 H 0.96997 * 120.00444 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.98442 * 359.97203 * 24 23 2 46 46 H 1.07998 * 120.01594 * 180.29004 * 25 24 23 47 47 H 1.07999 * 120.01215 * 179.97438 * 28 26 25 48 48 H 1.07993 * 119.99206 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 2.7507 -1.6329 -3.8368 9 6 1.6073 0.3712 -4.8927 10 6 2.7067 1.3809 -5.2284 11 1 3.6404 0.8515 -5.4186 12 8 2.8827 2.2767 -4.1291 13 6 2.3078 2.1739 -6.4744 14 7 3.4101 3.0559 -6.8657 15 6 3.2820 3.8673 -7.9614 16 1 2.3681 3.8573 -8.5368 17 6 4.3266 4.7026 -8.3324 18 7 5.4406 4.7145 -7.6315 19 14 4.1516 5.8100 -9.8266 20 1 2.8129 5.6093 -10.4373 21 1 4.2993 7.2282 -9.4118 22 1 5.2036 5.4723 -10.8189 23 6 2.0323 -0.7104 1.2304 24 6 1.6934 -2.0323 1.4515 25 6 2.1581 -2.6865 2.5766 26 6 2.9546 -2.0143 3.4881 27 9 3.4049 -2.6512 4.5912 28 6 3.2888 -0.6887 3.2685 29 6 2.8268 -0.0379 2.1403 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 2.0613 -2.4723 -3.9274 36 1 3.3771 -1.5795 -4.7272 37 1 3.3798 -1.7726 -2.9577 38 1 1.4732 -0.3121 -5.7312 39 1 0.6737 0.9006 -4.7024 40 1 2.0901 2.7826 -3.9032 41 1 2.0876 1.4841 -7.2892 42 1 1.4233 2.7726 -6.2564 43 1 4.2310 3.0646 -6.3491 44 1 6.1707 5.2979 -7.8910 45 1 1.0685 -2.5551 0.7425 46 1 1.8971 -3.7206 2.7467 47 1 3.9096 -0.1632 3.9791 48 1 3.0870 0.9961 1.9690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677138308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:04 Heat of formation + Delta-G solvation = -101.212925 kcal Electronic energy + Delta-G solvation = -28868.446271 eV Core-core repulsion = 24644.946264 eV Total energy + Delta-G solvation = -4223.500007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.20547 -40.43197 -39.44161 -37.37852 -35.41102 -34.97817 -33.97023 -31.52284 -31.33921 -30.20616 -29.30187 -27.92040 -26.91243 -25.15447 -23.87632 -23.30278 -22.58849 -21.17210 -20.65919 -19.08113 -18.07712 -17.38030 -17.14059 -16.80773 -16.37499 -15.99389 -15.90088 -15.70817 -15.27417 -14.98722 -14.54638 -14.43971 -14.21598 -13.91108 -13.80137 -13.60924 -13.39965 -13.33549 -13.09130 -12.92964 -12.66689 -12.46570 -12.33290 -12.23299 -12.09357 -11.57912 -11.52546 -11.34197 -11.27294 -10.95117 -10.92334 -10.82342 -10.62009 -10.11457 -9.85327 -9.74633 -9.50749 -9.47694 -8.88950 -8.88534 -8.49162 -6.90292 -5.73693 -3.02985 0.77062 0.86172 2.64052 2.92844 3.22451 3.44273 3.49387 3.52060 3.91530 4.21450 4.29521 4.51758 4.58481 4.61469 4.67907 4.80737 4.89639 4.90549 4.93779 5.02550 5.04429 5.17665 5.25202 5.33077 5.37404 5.46075 5.51558 5.55626 5.56228 5.65112 5.69020 5.75117 5.76392 5.79345 5.85434 5.93326 6.02500 6.17812 6.25285 6.27857 6.45896 6.53258 6.54613 6.76356 7.33850 7.70669 8.17619 8.23881 8.44682 9.55923 10.14202 10.49730 11.48820 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.001887 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.891713 B =14831.739963 C =15294.449130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.036 4.036 3 H 0.092 0.908 4 C -0.131 4.131 5 C 0.521 3.479 6 O -0.532 6.532 7 N -0.611 5.611 8 C 0.076 3.924 9 C 0.084 3.916 10 C 0.087 3.913 11 H 0.094 0.906 12 O -0.548 6.548 13 C 0.126 3.874 14 N -0.725 5.725 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.014 4.014 18 N -0.930 5.930 19 Si 0.907 3.093 20 H -0.281 1.281 21 H -0.291 1.291 22 H -0.292 1.292 23 C -0.083 4.083 24 C -0.087 4.087 25 C -0.152 4.152 26 C 0.089 3.911 27 F -0.143 7.143 28 C -0.151 4.151 29 C -0.085 4.085 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.374 0.626 41 H 0.024 0.976 42 H 0.021 0.979 43 H 0.388 0.612 44 H 0.254 0.746 45 H 0.131 0.869 46 H 0.134 0.866 47 H 0.135 0.865 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.611 -19.275 20.400 29.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.055 4.055 3 H 0.110 0.890 4 C -0.171 4.171 5 C 0.309 3.691 6 O -0.408 6.408 7 N -0.344 5.344 8 C -0.067 4.067 9 C -0.039 4.039 10 C 0.026 3.974 11 H 0.112 0.888 12 O -0.353 6.353 13 C -0.003 4.003 14 N -0.370 5.370 15 C -0.373 4.373 16 H 0.088 0.912 17 C -0.210 4.210 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.206 1.206 21 H -0.218 1.218 22 H -0.219 1.219 23 C -0.083 4.083 24 C -0.105 4.105 25 C -0.171 4.171 26 C 0.070 3.930 27 F -0.122 7.122 28 C -0.170 4.170 29 C -0.103 4.103 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.221 0.779 41 H 0.041 0.959 42 H 0.039 0.961 43 H 0.222 0.778 44 H 0.064 0.936 45 H 0.149 0.851 46 H 0.151 0.849 47 H 0.153 0.847 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.399 -18.926 20.337 29.023 hybrid contribution -0.052 0.529 -0.566 0.776 sum -8.451 -18.397 19.772 28.298 Atomic orbital electron populations 1.21968 0.93507 1.01577 1.03528 1.19899 0.96813 0.99496 0.89243 0.89005 1.21765 1.03025 0.99902 0.92426 1.20443 0.79023 0.85466 0.84168 1.90634 1.40115 1.24130 1.85970 1.47720 1.55782 1.24582 1.06281 1.21819 0.95899 0.85540 1.03445 1.22247 0.99486 0.95305 0.86865 1.22465 0.98161 0.89693 0.87080 0.88809 1.86532 1.40621 1.57423 1.50711 1.21242 0.92608 0.92955 0.93485 1.42256 1.14986 1.46720 1.33038 1.19271 0.99616 1.15146 1.03223 0.91209 1.24765 0.96368 1.00432 0.99469 1.69688 1.05189 1.42138 1.40830 0.86112 0.77146 0.80509 0.82376 1.20578 1.21840 1.21879 1.20019 0.97484 0.94179 0.96652 1.20879 0.98885 0.94129 0.96583 1.21134 0.99818 1.01022 0.95140 1.17750 0.98688 0.91523 0.85007 1.91498 1.87587 1.81992 1.51076 1.21173 1.02733 0.93320 0.99727 1.21032 0.96124 1.00332 0.92799 0.92703 0.89960 0.93278 0.89136 0.88726 0.92657 0.90707 0.91033 0.89806 0.89487 0.77859 0.95859 0.96140 0.77775 0.93560 0.85066 0.84851 0.84737 0.84729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.74 37.16 0.32 -0.98 16 2 C -0.04 -0.31 2.21 -91.78 -0.20 -0.51 16 3 H 0.09 0.94 7.69 -51.92 -0.40 0.54 16 4 C -0.13 -1.08 3.47 -27.88 -0.10 -1.18 16 5 C 0.52 6.08 6.90 -10.98 -0.08 6.00 16 6 O -0.53 -7.78 12.33 -3.21 -0.04 -7.82 16 7 N -0.61 -6.68 2.83 -181.57 -0.51 -7.20 16 8 C 0.08 0.57 10.25 59.85 0.61 1.19 16 9 C 0.08 1.06 5.15 -4.04 -0.02 1.03 16 10 C 0.09 1.43 3.27 -26.73 -0.09 1.34 16 11 H 0.09 1.61 8.14 -51.93 -0.42 1.19 16 12 O -0.55 -10.16 12.09 -44.00 -0.53 -10.69 16 13 C 0.13 2.52 5.90 -4.04 -0.02 2.49 16 14 N -0.73 -18.91 5.55 -59.91 -0.33 -19.24 16 15 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 18 N -0.93 -28.89 13.06 55.49 0.72 -28.16 16 19 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 C -0.08 -0.65 4.78 -104.62 -0.50 -1.15 16 24 C -0.09 -0.60 8.76 -39.59 -0.35 -0.94 16 25 C -0.15 -1.11 10.03 -39.51 -0.40 -1.51 16 26 C 0.09 0.77 7.30 -39.42 -0.29 0.48 16 27 F -0.14 -1.37 17.27 2.25 0.04 -1.33 16 28 C -0.15 -1.20 10.03 -39.52 -0.40 -1.59 16 29 C -0.08 -0.67 9.67 -39.59 -0.38 -1.05 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.90 5.95 -51.93 -0.31 0.59 16 32 H 0.05 0.36 7.37 -51.93 -0.38 -0.03 16 33 H 0.09 0.55 7.55 -51.93 -0.39 0.16 16 34 H 0.09 0.74 7.40 -51.93 -0.38 0.35 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 37 H 0.07 0.45 6.43 -51.93 -0.33 0.11 16 38 H 0.08 0.88 8.07 -51.93 -0.42 0.46 16 39 H 0.09 1.16 7.42 -51.93 -0.39 0.77 16 40 H 0.37 6.54 8.45 45.56 0.38 6.93 16 41 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.39 10.91 7.67 -40.82 -0.31 10.60 16 44 H 0.25 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.13 0.67 7.16 -52.49 -0.38 0.29 16 46 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 48 H 0.13 0.91 7.94 -52.49 -0.42 0.50 16 LS Contribution 396.09 15.07 5.97 5.97 Total: -1.00 -34.32 396.09 -8.49 -42.81 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -6.65 Total: 11.90 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -2.13 Total: -3.94 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.12 Total: -54.61 kcal Atomic # 8 Polarization: -17.94 SS G_CDS: -0.57 Total: -18.51 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.33 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.32 -8.49 -42.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.407 kcal (2) G-P(sol) polarization free energy of solvation -34.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds