Wall clock time and date at job start Tue Mar 31 2020 20:42:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 109.46911 * 2 1 4 4 C 1.52996 * 109.47238 * 240.00372 * 2 1 3 5 5 C 1.50702 * 109.47159 * 64.99689 * 4 2 1 6 6 O 1.21283 * 120.00262 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99928 * 179.72352 * 5 4 2 8 8 C 1.46506 * 120.00264 * 0.28128 * 7 5 4 9 9 C 1.46499 * 120.00199 * 180.27479 * 7 5 4 10 10 C 1.53002 * 109.47088 * 89.99979 * 9 7 5 11 11 H 1.09005 * 109.46685 * 60.00344 * 10 9 7 12 12 O 1.42895 * 109.47316 * 300.00507 * 10 9 7 13 13 C 1.52995 * 109.47427 * 179.97438 * 10 9 7 14 14 N 1.46499 * 109.47472 * 185.00081 * 13 10 9 15 15 C 1.36937 * 120.00177 * 179.97438 * 14 13 10 16 16 H 1.07995 * 119.99866 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99887 * 180.02562 * 15 14 13 18 18 N 1.31615 * 120.00463 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00047 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46809 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47659 * 119.99879 * 19 17 15 22 22 H 1.48502 * 109.46988 * 240.00054 * 19 17 15 23 23 C 1.50695 * 109.46934 * 119.99972 * 2 1 3 24 24 C 1.38247 * 119.97435 * 59.73228 * 23 2 1 25 25 C 1.38197 * 120.02650 * 179.72232 * 24 23 2 26 26 C 1.38462 * 119.97161 * 0.52291 * 25 24 23 27 27 F 1.35103 * 120.02585 * 179.72687 * 26 25 24 28 28 C 1.38461 * 119.94947 * 359.74429 * 26 25 24 29 29 C 1.38192 * 119.97564 * 0.02562 * 28 26 25 30 30 H 1.09001 * 109.47260 * 299.99678 * 1 2 3 31 31 H 1.09001 * 109.47309 * 59.99648 * 1 2 3 32 32 H 1.08994 * 109.47016 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47066 * 304.99893 * 4 2 1 34 34 H 1.08994 * 109.47405 * 184.99723 * 4 2 1 35 35 H 1.08998 * 109.46921 * 89.99095 * 8 7 5 36 36 H 1.08994 * 109.46996 * 209.99677 * 8 7 5 37 37 H 1.09001 * 109.46578 * 329.99540 * 8 7 5 38 38 H 1.09001 * 109.47567 * 210.00057 * 9 7 5 39 39 H 1.09005 * 109.47076 * 330.00563 * 9 7 5 40 40 H 0.96693 * 114.00024 * 299.99568 * 12 10 9 41 41 H 1.09002 * 109.47498 * 305.00803 * 13 10 9 42 42 H 1.09005 * 109.47199 * 65.00294 * 13 10 9 43 43 H 0.97000 * 119.99716 * 0.02562 * 14 13 10 44 44 H 0.96997 * 120.00444 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.98442 * 359.97203 * 24 23 2 46 46 H 1.07998 * 120.01594 * 180.29004 * 25 24 23 47 47 H 1.07999 * 120.01215 * 179.97438 * 28 26 25 48 48 H 1.07993 * 119.99206 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 6 1.6413 0.0572 -2.4766 6 8 1.0116 1.0875 -2.3633 7 7 1.9897 -0.3885 -3.6999 8 6 2.7507 -1.6329 -3.8368 9 6 1.6073 0.3712 -4.8927 10 6 2.7067 1.3809 -5.2284 11 1 3.6404 0.8515 -5.4186 12 8 2.8827 2.2767 -4.1291 13 6 2.3078 2.1739 -6.4744 14 7 3.4101 3.0559 -6.8657 15 6 3.2820 3.8673 -7.9614 16 1 2.3681 3.8573 -8.5368 17 6 4.3266 4.7026 -8.3324 18 7 5.4406 4.7145 -7.6315 19 14 4.1516 5.8100 -9.8266 20 1 2.8129 5.6093 -10.4373 21 1 4.2993 7.2282 -9.4118 22 1 5.2036 5.4723 -10.8189 23 6 2.0323 -0.7104 1.2304 24 6 1.6934 -2.0323 1.4515 25 6 2.1581 -2.6865 2.5766 26 6 2.9546 -2.0143 3.4881 27 9 3.4049 -2.6512 4.5912 28 6 3.2888 -0.6887 3.2685 29 6 2.8268 -0.0379 2.1403 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6054 -1.7197 -1.2952 34 1 3.1263 -0.7993 -1.2057 35 1 2.0613 -2.4723 -3.9274 36 1 3.3771 -1.5795 -4.7272 37 1 3.3798 -1.7726 -2.9577 38 1 1.4732 -0.3121 -5.7312 39 1 0.6737 0.9006 -4.7024 40 1 2.0901 2.7826 -3.9032 41 1 2.0876 1.4841 -7.2892 42 1 1.4233 2.7726 -6.2564 43 1 4.2310 3.0646 -6.3491 44 1 6.1707 5.2979 -7.8910 45 1 1.0685 -2.5551 0.7425 46 1 1.8971 -3.7206 2.7467 47 1 3.9096 -0.1632 3.9791 48 1 3.0870 0.9961 1.9690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677138308.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:42:03 Heat of formation + Delta-G solvation = -123.557093 kcal Electronic energy + Delta-G solvation = -28869.415187 eV Core-core repulsion = 24644.946264 eV Total energy + Delta-G solvation = -4224.468923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.87039 -41.24668 -40.14407 -38.68843 -36.44238 -35.83626 -35.72721 -33.21973 -32.07539 -31.35039 -30.19228 -28.79937 -27.88190 -26.52048 -24.81290 -24.20871 -23.75545 -22.63365 -21.38169 -19.90683 -19.24014 -18.69552 -18.20051 -17.78658 -17.28217 -16.91733 -16.63686 -16.56971 -16.44518 -16.22414 -16.04761 -15.55176 -15.18459 -14.93537 -14.76505 -14.43825 -14.39160 -14.24894 -14.01354 -13.96985 -13.79450 -13.64743 -13.23383 -13.04604 -12.97894 -12.90888 -12.81368 -12.61762 -12.16587 -12.14826 -12.05707 -11.97033 -11.93689 -11.80889 -11.57423 -11.12480 -10.99259 -10.56510 -10.03216 -9.50510 -9.45063 -9.02523 -7.96066 -5.26026 0.16766 0.30925 1.45789 1.47551 1.57569 1.77315 2.11629 2.54737 2.63936 3.32504 3.35510 3.47957 3.58949 3.71748 3.80048 3.95805 3.98465 4.03471 4.12781 4.17695 4.25176 4.35674 4.37587 4.46279 4.49908 4.52155 4.59074 4.71288 4.73074 4.80101 4.88648 4.92182 4.97128 5.00966 5.05304 5.14515 5.19658 5.23974 5.25584 5.31419 5.45458 5.47149 5.58908 5.66700 5.95998 6.24951 6.51532 6.82102 7.31137 7.34032 8.07476 8.30177 9.27596 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.022166 B = 0.001887 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.891713 B =14831.739963 C =15294.449130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 H 0.068 0.932 4 C -0.123 4.123 5 C 0.511 3.489 6 O -0.569 6.569 7 N -0.613 5.613 8 C 0.069 3.931 9 C 0.096 3.904 10 C 0.097 3.903 11 H 0.087 0.913 12 O -0.565 6.565 13 C 0.123 3.877 14 N -0.741 5.741 15 C -0.247 4.247 16 H 0.078 0.922 17 C -0.080 4.080 18 N -0.970 5.970 19 Si 0.978 3.022 20 H -0.264 1.264 21 H -0.295 1.295 22 H -0.291 1.291 23 C -0.085 4.085 24 C -0.082 4.082 25 C -0.151 4.151 26 C 0.070 3.930 27 F -0.152 7.152 28 C -0.157 4.157 29 C -0.096 4.096 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.069 0.931 33 H 0.122 0.878 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.376 0.624 41 H 0.040 0.960 42 H 0.021 0.979 43 H 0.373 0.627 44 H 0.251 0.749 45 H 0.156 0.844 46 H 0.152 0.848 47 H 0.143 0.857 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.726 -21.474 20.041 30.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.049 4.049 3 H 0.086 0.914 4 C -0.163 4.163 5 C 0.301 3.699 6 O -0.448 6.448 7 N -0.345 5.345 8 C -0.073 4.073 9 C -0.028 4.028 10 C 0.036 3.964 11 H 0.105 0.895 12 O -0.371 6.371 13 C -0.004 4.004 14 N -0.384 5.384 15 C -0.379 4.379 16 H 0.096 0.904 17 C -0.272 4.272 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.188 1.188 21 H -0.222 1.222 22 H -0.218 1.218 23 C -0.085 4.085 24 C -0.100 4.100 25 C -0.170 4.170 26 C 0.051 3.949 27 F -0.131 7.131 28 C -0.176 4.176 29 C -0.114 4.114 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.140 0.860 34 H 0.121 0.879 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.128 0.872 39 H 0.097 0.903 40 H 0.223 0.777 41 H 0.058 0.942 42 H 0.039 0.961 43 H 0.205 0.795 44 H 0.060 0.940 45 H 0.174 0.826 46 H 0.170 0.830 47 H 0.160 0.840 48 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.549 -21.179 19.976 30.639 hybrid contribution 0.254 1.176 -0.418 1.274 sum -9.295 -20.002 19.559 29.479 Atomic orbital electron populations 1.21898 0.93578 1.02438 1.02178 1.19772 0.96664 0.98481 0.90007 0.91400 1.21779 1.03584 1.00644 0.90267 1.21101 0.78386 0.85257 0.85190 1.90625 1.41795 1.25851 1.86556 1.47839 1.55823 1.25322 1.05489 1.22089 0.96439 0.84607 1.04181 1.21990 0.97180 0.95014 0.88627 1.22403 0.99304 0.89659 0.85037 0.89483 1.86506 1.41178 1.58142 1.51300 1.21458 0.90750 0.92632 0.95577 1.42480 1.15947 1.47511 1.32443 1.19714 0.99628 1.14889 1.03622 0.90407 1.25656 0.96261 1.02484 1.02772 1.69855 1.06046 1.43353 1.42855 0.85014 0.77709 0.77932 0.78726 1.18793 1.22193 1.21800 1.19981 0.97641 0.94706 0.96195 1.21104 0.98558 0.93561 0.96748 1.21377 0.99005 1.01885 0.94702 1.18024 0.99626 0.91952 0.85301 1.91472 1.87843 1.82154 1.51647 1.21303 1.02912 0.93411 0.99966 1.21153 0.96494 1.00695 0.93010 0.92991 0.92333 0.91243 0.86039 0.87931 0.90028 0.90841 0.89552 0.87157 0.90348 0.77666 0.94209 0.96149 0.79481 0.94019 0.82609 0.83002 0.83954 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 8.74 71.98 0.63 -1.73 16 2 C -0.03 -0.49 2.21 -11.54 -0.03 -0.51 16 3 H 0.07 1.42 7.69 -2.38 -0.02 1.40 16 4 C -0.12 -1.75 3.47 29.85 0.10 -1.65 16 5 C 0.51 11.27 6.90 87.66 0.60 11.88 16 6 O -0.57 -16.73 12.33 5.35 0.07 -16.67 16 7 N -0.61 -12.17 2.83 -846.74 -2.39 -14.56 16 8 C 0.07 0.81 10.25 127.77 1.31 2.12 16 9 C 0.10 2.25 5.15 86.38 0.44 2.70 16 10 C 0.10 3.13 3.27 30.59 0.10 3.23 16 11 H 0.09 2.95 8.14 -2.38 -0.02 2.93 16 12 O -0.57 -21.30 12.09 -140.59 -1.70 -23.00 16 13 C 0.12 4.86 5.90 86.38 0.51 5.37 16 14 N -0.74 -38.97 5.55 -343.46 -1.91 -40.88 16 15 C -0.25 -14.12 9.99 84.03 0.84 -13.28 16 16 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 18 N -0.97 -61.38 13.06 21.65 0.28 -61.09 16 19 Si 0.98 46.95 29.55 68.60 2.03 48.97 16 20 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 21 H -0.29 -14.20 7.11 99.48 0.71 -13.50 16 22 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 23 C -0.08 -1.19 4.78 -19.86 -0.09 -1.29 16 24 C -0.08 -0.89 8.76 22.26 0.19 -0.70 16 25 C -0.15 -1.87 10.03 22.31 0.22 -1.64 16 26 C 0.07 1.13 7.30 22.38 0.16 1.29 16 27 F -0.15 -2.82 17.27 44.97 0.78 -2.04 16 28 C -0.16 -2.41 10.03 22.31 0.22 -2.18 16 29 C -0.10 -1.44 9.67 22.26 0.22 -1.23 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.27 5.95 -2.39 -0.01 1.26 16 32 H 0.07 0.83 7.37 -2.39 -0.02 0.81 16 33 H 0.12 0.98 7.55 -2.38 -0.02 0.96 16 34 H 0.10 1.34 7.40 -2.39 -0.02 1.32 16 35 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 36 H 0.07 0.92 8.07 -2.39 -0.02 0.90 16 37 H 0.09 0.78 6.43 -2.39 -0.02 0.76 16 38 H 0.11 2.00 8.07 -2.39 -0.02 1.99 16 39 H 0.08 2.01 7.42 -2.38 -0.02 1.99 16 40 H 0.38 13.57 8.45 -74.06 -0.63 12.94 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 43 H 0.37 21.50 7.67 -92.71 -0.71 20.79 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 45 H 0.16 0.90 7.16 -2.91 -0.02 0.88 16 46 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 47 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 48 H 0.14 1.90 7.94 -2.91 -0.02 1.87 16 Total: -1.00 -75.32 396.09 2.71 -72.62 By element: Atomic # 1 Polarization: 38.85 SS G_CDS: -0.35 Total: 38.50 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: 5.91 Total: -1.85 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.02 Total: -116.53 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -1.63 Total: -39.66 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.78 Total: -2.04 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.97 kcal Total: -75.32 2.71 -72.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677138308.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.941 kcal (2) G-P(sol) polarization free energy of solvation -75.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds