Wall clock time and date at job start Tue Mar 31 2020 21:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46495 * 109.46765 * 2 1 4 4 C 1.36935 * 119.99828 * 272.56415 * 3 2 1 5 5 H 1.08001 * 120.00070 * 38.48898 * 4 3 2 6 6 C 1.38820 * 119.99978 * 218.48592 * 4 3 2 7 7 N 1.31612 * 119.99966 * 22.05720 * 6 4 3 8 8 Si 1.86800 * 119.99987 * 202.05690 * 6 4 3 9 9 H 1.48503 * 109.47151 * 89.99943 * 8 6 4 10 10 H 1.48500 * 109.47283 * 210.00229 * 8 6 4 11 11 H 1.48507 * 109.46988 * 330.00245 * 8 6 4 12 12 C 1.46498 * 120.00135 * 92.56883 * 3 2 1 13 13 C 1.52997 * 109.46897 * 269.99847 * 12 3 2 14 14 C 1.53007 * 109.47122 * 179.97438 * 13 12 3 15 15 N 1.46490 * 109.47271 * 179.97438 * 14 13 12 16 16 C 1.34778 * 119.99923 * 180.02562 * 15 14 13 17 17 O 1.21278 * 120.00382 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99722 * 180.02562 * 16 15 14 19 19 H 1.08998 * 109.47431 * 304.99905 * 18 16 15 20 20 C 1.52999 * 109.47355 * 65.00121 * 18 16 15 21 21 O 1.42909 * 109.47001 * 184.99905 * 18 16 15 22 22 C 1.35953 * 116.99945 * 154.92764 * 21 18 16 23 23 C 1.38656 * 120.06253 * 5.56864 * 22 21 18 24 24 C 1.38186 * 119.96622 * 180.02562 * 23 22 21 25 25 C 1.38259 * 120.09819 * 359.97438 * 24 23 22 26 26 C 1.38251 * 120.12414 * 0.02562 * 25 24 23 27 27 C 1.38332 * 120.03079 * 0.27646 * 26 25 24 28 28 F 1.35099 * 120.05017 * 179.72286 * 27 26 25 29 29 H 1.08990 * 109.46974 * 299.99695 * 1 2 3 30 30 H 1.08994 * 109.46910 * 60.00451 * 1 2 3 31 31 H 1.09004 * 109.46466 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47065 * 239.99605 * 2 1 3 33 33 H 1.09006 * 109.46900 * 119.99965 * 2 1 3 34 34 H 0.96995 * 119.99764 * 179.97438 * 7 6 4 35 35 H 1.09006 * 109.47433 * 149.99711 * 12 3 2 36 36 H 1.08998 * 109.47075 * 29.99502 * 12 3 2 37 37 H 1.08996 * 109.47665 * 60.00002 * 13 12 3 38 38 H 1.08998 * 109.46976 * 299.99716 * 13 12 3 39 39 H 1.09005 * 109.46786 * 59.99692 * 14 13 12 40 40 H 1.09005 * 109.47009 * 300.00112 * 14 13 12 41 41 H 0.97001 * 120.00056 * 0.02562 * 15 14 13 42 42 H 1.09005 * 109.47089 * 300.00001 * 20 18 16 43 43 H 1.09004 * 109.47461 * 59.99462 * 20 18 16 44 44 H 1.09001 * 109.47572 * 179.97438 * 20 18 16 45 45 H 1.08005 * 120.01783 * 359.97438 * 23 22 21 46 46 H 1.08001 * 119.94872 * 180.02562 * 24 23 22 47 47 H 1.07997 * 119.93893 * 180.02562 * 25 24 23 48 48 H 1.07996 * 119.98839 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1965 2.0444 -1.1847 5 1 1.4917 1.9074 -1.9916 6 6 3.2829 2.8928 -1.3487 7 7 4.3496 2.7499 -0.5911 8 14 3.2308 4.2373 -2.6445 9 1 2.6690 5.4766 -2.0497 10 1 4.6063 4.5039 -3.1368 11 1 2.3757 3.8001 -3.7772 12 6 2.3160 2.0529 1.2674 13 6 1.0610 2.7670 1.7732 14 6 1.3718 3.4680 3.0973 15 7 0.1703 4.1523 3.5813 16 6 0.2077 4.8419 4.7387 17 8 1.2358 4.8956 5.3797 18 6 -1.0285 5.5453 5.2368 19 1 -1.3994 6.2191 4.4645 20 6 -2.1048 4.5104 5.5705 21 8 -0.7092 6.2958 6.4104 22 6 -1.4984 7.3663 6.6921 23 6 -2.6246 7.6203 5.9242 24 6 -3.4251 8.7093 6.2119 25 6 -3.1050 9.5461 7.2650 26 6 -1.9830 9.2965 8.0332 27 6 -1.1746 8.2115 7.7459 28 9 -0.0750 7.9705 8.4929 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 5.1089 3.3425 -0.7060 35 1 3.1120 2.7817 1.1142 36 1 2.6357 1.3151 2.0033 37 1 0.2651 2.0383 1.9265 38 1 0.7414 3.5048 1.0373 39 1 2.1679 4.1968 2.9444 40 1 1.6913 2.7298 3.8330 41 1 -0.6521 4.1090 3.0688 42 1 -2.3483 3.9379 4.6754 43 1 -1.7339 3.8365 6.3429 44 1 -2.9987 5.0191 5.9312 45 1 -2.8757 6.9677 5.1010 46 1 -4.3025 8.9066 5.6139 47 1 -3.7327 10.3962 7.4879 48 1 -1.7353 9.9514 8.8555 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689934646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:03 Heat of formation + Delta-G solvation = -97.607069 kcal Electronic energy + Delta-G solvation = -28826.807620 eV Core-core repulsion = 24603.463975 eV Total energy + Delta-G solvation = -4223.343645 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -49.86282 -41.71869 -40.40385 -38.49372 -38.11080 -36.26981 -33.88320 -33.67706 -32.26283 -31.65206 -30.60311 -30.15923 -27.27661 -25.94166 -25.08523 -23.89508 -23.34255 -22.56057 -22.05343 -21.27429 -19.69305 -18.68551 -18.56414 -18.04342 -17.35980 -17.23698 -17.00636 -16.82078 -16.62648 -16.11951 -15.88102 -15.63021 -15.57342 -15.42676 -15.04245 -14.85193 -14.28013 -14.26312 -14.03575 -13.97925 -13.53115 -13.30570 -13.23867 -13.19530 -12.96442 -12.76683 -12.74793 -12.64687 -12.58359 -12.32145 -12.19663 -12.12327 -12.01394 -11.91995 -11.46246 -11.22735 -10.96339 -10.49460 -10.22619 -9.95028 -9.27255 -8.53936 -7.81005 -5.45582 0.11196 0.22908 1.39535 1.43138 1.46413 1.48078 1.56099 2.42031 2.51704 2.59363 3.23173 3.23927 3.42584 3.63490 3.67220 3.76823 3.81429 3.94478 4.14571 4.23308 4.29220 4.32575 4.43425 4.45593 4.54196 4.61409 4.66524 4.72776 4.77766 4.90098 4.95621 4.98052 5.04448 5.08490 5.09185 5.18249 5.25259 5.32374 5.36084 5.41808 5.46137 5.62694 5.66288 5.70963 5.83046 6.17744 6.44301 6.48664 7.08573 7.19490 7.89062 8.42442 9.13621 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015091 B = 0.002153 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.909238 B =13004.514662 C =13509.797252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.263 4.263 5 H 0.057 0.943 6 C -0.036 4.036 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.284 1.284 10 H -0.298 1.298 11 H -0.266 1.266 12 C 0.151 3.849 13 C -0.121 4.121 14 C 0.133 3.867 15 N -0.702 5.702 16 C 0.508 3.492 17 O -0.577 6.577 18 C 0.069 3.931 19 H 0.131 0.869 20 C -0.169 4.169 21 O -0.316 6.316 22 C 0.073 3.927 23 C -0.186 4.186 24 C -0.080 4.080 25 C -0.124 4.124 26 C -0.118 4.118 27 C 0.026 3.974 28 F -0.157 7.157 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.041 0.959 34 H 0.250 0.750 35 H 0.054 0.946 36 H 0.027 0.973 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.060 0.940 41 H 0.419 0.581 42 H 0.109 0.891 43 H 0.058 0.942 44 H 0.096 0.904 45 H 0.164 0.836 46 H 0.170 0.830 47 H 0.168 0.832 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.132 10.520 13.586 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.393 4.393 5 H 0.074 0.926 6 C -0.234 4.234 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.225 1.225 11 H -0.191 1.191 12 C 0.024 3.976 13 C -0.161 4.161 14 C 0.008 3.992 15 N -0.356 5.356 16 C 0.294 3.706 17 O -0.455 6.455 18 C 0.010 3.990 19 H 0.148 0.852 20 C -0.226 4.226 21 O -0.230 6.230 22 C 0.027 3.973 23 C -0.204 4.204 24 C -0.098 4.098 25 C -0.142 4.142 26 C -0.136 4.136 27 C 0.006 3.994 28 F -0.136 7.136 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.048 0.952 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.045 0.955 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.257 0.743 42 H 0.128 0.872 43 H 0.077 0.923 44 H 0.115 0.885 45 H 0.181 0.819 46 H 0.187 0.813 47 H 0.186 0.814 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.014 10.493 14.143 28.191 hybrid contribution 0.903 0.443 -0.713 1.233 sum -21.111 10.936 13.429 27.306 Atomic orbital electron populations 1.22176 0.96990 1.00819 1.01012 1.21013 0.94023 0.85672 0.98529 1.43971 1.76852 1.09567 1.01816 1.19179 1.04097 1.22382 0.93655 0.92581 1.25895 0.94027 1.03396 1.00058 1.70156 1.04152 1.38388 1.43567 0.85490 0.76460 0.80143 0.79718 1.21081 1.22517 1.19094 1.20654 0.95366 0.95775 0.85757 1.22177 1.00800 0.99547 0.93624 1.21190 0.86754 0.95332 0.95910 1.45774 1.15355 1.51832 1.22608 1.20763 0.89620 0.79164 0.81057 1.90739 1.34671 1.62268 1.57869 1.22437 0.93353 0.95017 0.88206 0.85171 1.22369 0.97156 0.98297 1.04818 1.86236 1.53919 1.39123 1.43675 1.19430 0.93074 0.88369 0.96424 1.21577 0.94505 1.02294 1.02006 1.21534 0.99412 0.92203 0.96656 1.21417 0.96368 1.01263 0.95119 1.21357 0.95058 0.95208 1.01995 1.17669 0.88218 0.99047 0.94438 1.91451 1.52169 1.94490 1.75454 0.92710 0.94333 0.91757 0.95209 0.94080 0.94086 0.92797 0.95479 0.90495 0.92503 0.93959 0.92127 0.74311 0.87210 0.92315 0.88483 0.81874 0.81273 0.81417 0.82517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.74 10.23 71.98 0.74 -4.01 16 2 C 0.13 5.30 6.43 86.38 0.56 5.86 16 3 N -0.60 -28.50 2.42 -701.99 -1.70 -30.20 16 4 C -0.26 -13.86 9.45 84.04 0.79 -13.06 16 5 H 0.06 2.95 7.92 -2.91 -0.02 2.92 16 6 C -0.04 -1.97 4.93 84.86 0.42 -1.55 16 7 N -0.92 -53.66 11.58 21.65 0.25 -53.41 16 8 Si 0.95 43.78 29.61 68.60 2.03 45.81 16 9 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.15 6.76 5.34 86.38 0.46 7.22 16 13 C -0.12 -4.15 5.65 30.60 0.17 -3.98 16 14 C 0.13 4.31 5.67 86.38 0.49 4.80 16 15 N -0.70 -17.62 5.52 -463.05 -2.55 -20.18 16 16 C 0.51 14.90 7.18 87.66 0.63 15.53 16 17 O -0.58 -23.85 16.51 15.97 0.26 -23.58 16 18 C 0.07 1.41 2.63 29.85 0.08 1.49 16 19 H 0.13 1.77 6.31 -2.39 -0.02 1.76 16 20 C -0.17 -2.24 9.13 71.98 0.66 -1.59 16 21 O -0.32 -8.91 9.20 -74.03 -0.68 -9.59 16 22 C 0.07 1.64 6.61 22.53 0.15 1.79 16 23 C -0.19 -2.49 8.25 22.36 0.18 -2.30 16 24 C -0.08 -0.70 10.04 22.26 0.22 -0.48 16 25 C -0.12 -1.17 10.04 22.28 0.22 -0.94 16 26 C -0.12 -1.80 10.02 22.30 0.22 -1.58 16 27 C 0.03 0.62 7.31 22.45 0.16 0.78 16 28 F -0.16 -4.76 17.11 44.97 0.77 -3.99 16 29 H 0.05 1.59 6.44 -2.39 -0.02 1.58 16 30 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 32 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 33 H 0.04 1.54 7.86 -2.38 -0.02 1.53 16 34 H 0.25 14.24 8.31 -92.71 -0.77 13.47 16 35 H 0.05 2.86 5.61 -2.38 -0.01 2.84 16 36 H 0.03 1.17 7.87 -2.39 -0.02 1.15 16 37 H 0.08 2.28 6.44 -2.39 -0.02 2.27 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 40 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 41 H 0.42 7.10 8.26 -92.71 -0.77 6.34 16 42 H 0.11 0.85 7.93 -2.38 -0.02 0.83 16 43 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.10 0.89 6.92 -2.39 -0.02 0.88 16 45 H 0.16 1.27 5.43 -2.91 -0.02 1.25 16 46 H 0.17 0.29 8.06 -2.91 -0.02 0.26 16 47 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 48 H 0.16 1.75 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -78.18 398.56 4.75 -73.44 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: 0.21 Total: 13.72 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: 6.16 Total: 7.99 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.00 Total: -103.79 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.42 Total: -33.17 kcal Atomic # 9 Polarization: -4.76 SS G_CDS: 0.77 Total: -3.99 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -78.18 4.75 -73.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689934646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.172 kcal (2) G-P(sol) polarization free energy of solvation -78.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds