Wall clock time and date at job start Tue Mar 31 2020 21:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47081 * 2 1 4 4 C 1.36934 * 119.99964 * 275.30785 * 3 2 1 5 5 H 1.07997 * 120.00196 * 37.58276 * 4 3 2 6 6 C 1.38812 * 120.00067 * 217.58042 * 4 3 2 7 7 N 1.31612 * 120.00128 * 21.42306 * 6 4 3 8 8 Si 1.86802 * 119.99874 * 201.43002 * 6 4 3 9 9 H 1.48494 * 109.47480 * 89.99617 * 8 6 4 10 10 H 1.48498 * 109.46795 * 209.99776 * 8 6 4 11 11 H 1.48502 * 109.47051 * 329.99221 * 8 6 4 12 12 C 1.46500 * 120.00133 * 95.30900 * 3 2 1 13 13 C 1.53001 * 109.47235 * 270.00292 * 12 3 2 14 14 N 1.46500 * 109.47235 * 180.02562 * 13 12 3 15 15 C 1.34782 * 119.99783 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99788 * 179.97438 * 15 14 13 18 18 C 1.52990 * 109.47077 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47077 * 180.02562 * 18 17 15 20 20 C 1.38298 * 119.98812 * 264.99842 * 19 18 17 21 21 C 1.38219 * 120.12989 * 179.97438 * 20 19 18 22 22 C 1.38227 * 120.09073 * 0.02562 * 21 20 19 23 23 C 1.38621 * 119.97067 * 359.97438 * 22 21 20 24 24 O 1.35959 * 120.05939 * 180.02562 * 23 22 21 25 25 C 1.42895 * 117.00081 * 359.97438 * 24 23 22 26 26 C 1.38287 * 119.98454 * 85.00499 * 19 18 17 27 27 F 1.35104 * 120.04636 * 0.27703 * 26 19 18 28 28 H 1.08998 * 109.46768 * 60.00175 * 1 2 3 29 29 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46920 * 300.00574 * 1 2 3 31 31 H 1.08998 * 109.47469 * 239.99913 * 2 1 3 32 32 H 1.09002 * 109.47253 * 119.99945 * 2 1 3 33 33 H 0.97002 * 120.00207 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47541 * 149.99707 * 12 3 2 35 35 H 1.08999 * 109.47003 * 29.99978 * 12 3 2 36 36 H 1.08998 * 109.47333 * 59.99288 * 13 12 3 37 37 H 1.08999 * 109.46869 * 299.99769 * 13 12 3 38 38 H 0.97003 * 120.00029 * 359.97438 * 14 13 12 39 39 H 1.09004 * 109.46731 * 60.00500 * 17 15 14 40 40 H 1.08999 * 109.47237 * 300.00398 * 17 15 14 41 41 H 1.09004 * 109.46975 * 60.00596 * 18 17 15 42 42 H 1.08999 * 109.47368 * 300.00264 * 18 17 15 43 43 H 1.08003 * 119.93624 * 359.97438 * 20 19 18 44 44 H 1.07998 * 119.95379 * 179.97438 * 21 20 19 45 45 H 1.08002 * 120.01027 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47089 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47233 * 299.99406 * 25 24 23 48 48 H 1.08996 * 109.47781 * 59.99542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6491 8 14 3.0993 4.2795 -2.6584 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5696 -3.1908 11 1 2.2167 3.8357 -3.7672 12 6 2.3732 2.0328 1.2633 13 6 1.1426 2.7383 1.8366 14 7 1.4976 3.3903 3.0995 15 6 0.5651 4.0779 3.7883 16 8 -0.5678 4.1564 3.3628 17 6 0.9302 4.7481 5.0878 18 6 -0.3004 5.4537 5.6610 19 6 0.0648 6.1244 6.9601 20 6 -0.1579 5.4742 8.1602 21 6 0.1764 6.0865 9.3535 22 6 0.7341 7.3513 9.3510 23 6 0.9590 8.0066 8.1504 24 8 1.5079 9.2505 8.1459 25 6 1.8281 9.8229 9.4154 26 6 0.6223 7.3899 6.9517 27 9 0.8347 8.0278 5.7798 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0489 3.4032 -0.7830 34 1 3.1617 2.7642 1.0860 35 1 2.7255 1.2834 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7903 3.4876 1.1277 38 1 2.4037 3.3272 3.4400 39 1 1.7189 5.4793 4.9104 40 1 1.2821 3.9988 5.7968 41 1 -1.0888 4.7222 5.8384 42 1 -0.6527 6.2030 4.9521 43 1 -0.5939 4.4861 8.1651 44 1 0.0009 5.5763 10.2890 45 1 0.9952 7.8283 10.2842 46 1 2.2574 10.8141 9.2692 47 1 0.9222 9.9048 10.0159 48 1 2.5485 9.1868 9.9296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691022736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:49 Heat of formation + Delta-G solvation = -86.023821 kcal Electronic energy + Delta-G solvation = -28676.437103 eV Core-core repulsion = 24453.595745 eV Total energy + Delta-G solvation = -4222.841358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -48.92493 -40.37365 -39.34862 -38.02286 -36.30986 -34.12000 -33.83420 -31.87488 -30.64604 -30.23972 -29.31487 -27.78967 -27.40683 -24.94567 -23.97356 -22.88699 -21.88783 -21.22938 -20.37898 -19.80802 -18.40394 -17.38654 -17.25892 -16.97351 -16.48661 -16.27954 -15.49613 -15.43658 -15.20136 -15.07629 -14.91931 -14.78993 -14.16165 -14.02188 -13.70829 -13.44678 -13.29302 -13.01095 -12.85600 -12.45240 -12.42178 -12.36951 -12.20862 -11.98596 -11.87027 -11.51312 -11.40423 -11.32920 -11.11465 -11.06345 -10.76526 -10.62262 -10.48401 -10.06952 -9.85062 -9.81901 -9.49318 -9.01794 -8.54925 -8.54022 -8.41473 -6.61682 -5.82408 -3.41357 0.76838 0.92265 2.74764 3.00835 3.19054 3.37292 3.44886 3.46832 3.64146 3.95938 4.32815 4.43159 4.48711 4.64560 4.71075 4.78912 4.86251 4.87110 4.95974 5.05430 5.16710 5.28609 5.31026 5.51132 5.56781 5.61551 5.67897 5.79726 5.95925 6.00901 6.03365 6.13517 6.15023 6.19072 6.31538 6.39498 6.44262 6.52560 6.69910 6.91378 6.91931 6.93558 7.05204 7.17724 7.56041 7.81591 7.97532 8.49110 8.63671 9.15821 9.77676 10.35640 11.17568 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002212 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.509743 B =12654.282154 C =13863.779276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.260 4.260 5 H 0.062 0.938 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.897 3.103 9 H -0.285 1.285 10 H -0.291 1.291 11 H -0.276 1.276 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.721 5.721 15 C 0.507 3.493 16 O -0.549 6.549 17 C -0.136 4.136 18 C -0.065 4.065 19 C -0.074 4.074 20 C -0.125 4.125 21 C -0.088 4.088 22 C -0.189 4.189 23 C 0.095 3.905 24 O -0.310 6.310 25 C 0.027 3.973 26 C 0.072 3.928 27 F -0.127 7.127 28 H 0.050 0.950 29 H 0.036 0.964 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.255 0.745 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.397 0.603 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.086 0.914 43 H 0.136 0.864 44 H 0.132 0.868 45 H 0.136 0.864 46 H 0.102 0.898 47 H 0.057 0.943 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.730 7.791 24.745 26.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.390 4.390 5 H 0.079 0.921 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.217 1.217 11 H -0.202 1.202 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.372 5.372 15 C 0.293 3.707 16 O -0.428 6.428 17 C -0.176 4.176 18 C -0.103 4.103 19 C -0.075 4.075 20 C -0.143 4.143 21 C -0.106 4.106 22 C -0.208 4.208 23 C 0.049 3.951 24 O -0.223 6.223 25 C -0.068 4.068 26 C 0.052 3.948 27 F -0.106 7.106 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.231 0.769 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.105 0.895 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.153 0.847 46 H 0.121 0.879 47 H 0.075 0.925 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.298 8.047 24.161 26.011 hybrid contribution 0.498 0.944 -0.302 1.109 sum -4.800 8.990 23.859 25.944 Atomic orbital electron populations 1.22389 0.99925 0.99051 1.01411 1.20878 0.91766 0.86998 0.98863 1.43615 1.76053 1.08282 1.02109 1.19030 1.04726 1.21248 0.93981 0.92065 1.25188 0.94154 1.01215 0.98177 1.69990 1.03180 1.37231 1.42585 0.86384 0.76921 0.82614 0.81451 1.21177 1.21704 1.20160 1.21058 0.94624 0.96927 0.86401 1.22442 1.00976 0.96514 0.82895 1.46155 1.13152 1.53220 1.24623 1.20505 0.85471 0.78901 0.85846 1.90680 1.20645 1.61263 1.70183 1.21632 0.99571 1.00860 0.95529 1.20295 0.97610 1.00186 0.92171 1.19897 0.98267 0.92133 0.97243 1.20932 1.01969 1.00696 0.90721 1.20991 0.97036 0.94086 0.98518 1.21122 1.06039 0.97342 0.96315 1.19013 0.96933 0.85964 0.93179 1.86157 1.76306 1.27687 1.32189 1.23113 1.00446 0.99096 0.84145 1.16857 1.06106 0.92204 0.79623 1.91522 1.92848 1.81327 1.44880 0.93114 0.94472 0.93666 0.93595 0.94758 0.93522 0.88420 0.95359 0.93056 0.91846 0.76937 0.88875 0.88796 0.89232 0.89505 0.84615 0.85006 0.84651 0.87931 0.92481 0.92406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.15 10.21 37.16 0.38 -2.77 16 2 C 0.14 2.97 6.44 -4.04 -0.03 2.95 16 3 N -0.58 -14.19 2.43 -173.24 -0.42 -14.61 16 4 C -0.26 -7.05 9.45 -15.06 -0.14 -7.19 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -24.96 11.47 55.49 0.64 -24.32 16 8 Si 0.90 21.71 29.60 -169.99 -5.03 16.68 16 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.05 16 13 C 0.10 2.00 6.00 -4.04 -0.02 1.97 16 14 N -0.72 -12.12 5.56 -60.29 -0.33 -12.46 16 15 C 0.51 8.39 7.83 -10.98 -0.09 8.31 16 16 O -0.55 -11.22 15.98 5.56 0.09 -11.13 16 17 C -0.14 -1.63 5.68 -27.89 -0.16 -1.79 16 18 C -0.07 -0.77 4.41 -27.89 -0.12 -0.89 16 19 C -0.07 -0.79 5.14 -104.58 -0.54 -1.33 16 20 C -0.12 -1.04 9.68 -39.57 -0.38 -1.42 16 21 C -0.09 -0.62 10.04 -39.59 -0.40 -1.02 16 22 C -0.19 -1.47 9.04 -39.44 -0.36 -1.82 16 23 C 0.10 1.01 6.69 -39.18 -0.26 0.74 16 24 O -0.31 -3.24 10.36 -19.61 -0.20 -3.45 16 25 C 0.03 0.15 9.81 101.05 0.99 1.14 16 26 C 0.07 0.87 7.25 -39.30 -0.28 0.59 16 27 F -0.13 -1.82 16.41 2.25 0.04 -1.79 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.04 0.85 6.64 -51.93 -0.34 0.51 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.26 16 33 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 34 H 0.10 2.46 5.52 -51.93 -0.29 2.17 16 35 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.05 1.07 6.64 -51.93 -0.34 0.73 16 37 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.40 5.62 8.47 -40.82 -0.35 5.28 16 39 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.09 1.02 8.01 -51.93 -0.42 0.60 16 42 H 0.09 1.19 7.74 -51.93 -0.40 0.79 16 43 H 0.14 0.88 8.06 -52.48 -0.42 0.45 16 44 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.14 0.69 6.30 -52.49 -0.33 0.36 16 46 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.24 7.66 -51.93 -0.40 -0.16 16 48 H 0.06 0.24 7.66 -51.93 -0.40 -0.15 16 LS Contribution 400.82 15.07 6.04 6.04 Total: -1.00 -33.02 400.82 -8.14 -41.16 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -7.43 Total: 3.09 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: -1.52 Total: 0.79 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.12 Total: -51.39 kcal Atomic # 8 Polarization: -14.47 SS G_CDS: -0.11 Total: -14.58 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.79 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.02 -8.14 -41.16 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691022736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.864 kcal (2) G-P(sol) polarization free energy of solvation -33.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds