Wall clock time and date at job start Tue Mar 31 2020 21:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.47081 * 2 1 4 4 C 1.36934 * 119.99964 * 275.30785 * 3 2 1 5 5 H 1.07997 * 120.00196 * 37.58276 * 4 3 2 6 6 C 1.38812 * 120.00067 * 217.58042 * 4 3 2 7 7 N 1.31612 * 120.00128 * 21.42306 * 6 4 3 8 8 Si 1.86802 * 119.99874 * 201.43002 * 6 4 3 9 9 H 1.48494 * 109.47480 * 89.99617 * 8 6 4 10 10 H 1.48498 * 109.46795 * 209.99776 * 8 6 4 11 11 H 1.48502 * 109.47051 * 329.99221 * 8 6 4 12 12 C 1.46500 * 120.00133 * 95.30900 * 3 2 1 13 13 C 1.53001 * 109.47235 * 270.00292 * 12 3 2 14 14 N 1.46500 * 109.47235 * 180.02562 * 13 12 3 15 15 C 1.34782 * 119.99783 * 179.97438 * 14 13 12 16 16 O 1.21274 * 120.00067 * 0.02562 * 15 14 13 17 17 C 1.50700 * 119.99788 * 179.97438 * 15 14 13 18 18 C 1.52990 * 109.47077 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.47077 * 180.02562 * 18 17 15 20 20 C 1.38298 * 119.98812 * 264.99842 * 19 18 17 21 21 C 1.38219 * 120.12989 * 179.97438 * 20 19 18 22 22 C 1.38227 * 120.09073 * 0.02562 * 21 20 19 23 23 C 1.38621 * 119.97067 * 359.97438 * 22 21 20 24 24 O 1.35959 * 120.05939 * 180.02562 * 23 22 21 25 25 C 1.42895 * 117.00081 * 359.97438 * 24 23 22 26 26 C 1.38287 * 119.98454 * 85.00499 * 19 18 17 27 27 F 1.35104 * 120.04636 * 0.27703 * 26 19 18 28 28 H 1.08998 * 109.46768 * 60.00175 * 1 2 3 29 29 H 1.08996 * 109.47010 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.46920 * 300.00574 * 1 2 3 31 31 H 1.08998 * 109.47469 * 239.99913 * 2 1 3 32 32 H 1.09002 * 109.47253 * 119.99945 * 2 1 3 33 33 H 0.97002 * 120.00207 * 180.02562 * 7 6 4 34 34 H 1.08998 * 109.47541 * 149.99707 * 12 3 2 35 35 H 1.08999 * 109.47003 * 29.99978 * 12 3 2 36 36 H 1.08998 * 109.47333 * 59.99288 * 13 12 3 37 37 H 1.08999 * 109.46869 * 299.99769 * 13 12 3 38 38 H 0.97003 * 120.00029 * 359.97438 * 14 13 12 39 39 H 1.09004 * 109.46731 * 60.00500 * 17 15 14 40 40 H 1.08999 * 109.47237 * 300.00398 * 17 15 14 41 41 H 1.09004 * 109.46975 * 60.00596 * 18 17 15 42 42 H 1.08999 * 109.47368 * 300.00264 * 18 17 15 43 43 H 1.08003 * 119.93624 * 359.97438 * 20 19 18 44 44 H 1.07998 * 119.95379 * 179.97438 * 21 20 19 45 45 H 1.08002 * 120.01027 * 180.02562 * 22 21 20 46 46 H 1.09000 * 109.47089 * 180.02562 * 25 24 23 47 47 H 1.09000 * 109.47233 * 299.99406 * 25 24 23 48 48 H 1.08996 * 109.47781 * 59.99542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1431 2.0633 -1.1808 5 1 1.4106 1.9279 -1.9627 6 6 3.2112 2.9289 -1.3728 7 7 4.3026 2.7981 -0.6491 8 14 3.0993 4.2795 -2.6584 9 1 2.5376 5.5069 -2.0395 10 1 4.4549 4.5696 -3.1908 11 1 2.2167 3.8357 -3.7672 12 6 2.3732 2.0328 1.2633 13 6 1.1426 2.7383 1.8366 14 7 1.4976 3.3903 3.0995 15 6 0.5651 4.0779 3.7883 16 8 -0.5678 4.1564 3.3628 17 6 0.9302 4.7481 5.0878 18 6 -0.3004 5.4537 5.6610 19 6 0.0648 6.1244 6.9601 20 6 -0.1579 5.4742 8.1602 21 6 0.1764 6.0865 9.3535 22 6 0.7341 7.3513 9.3510 23 6 0.9590 8.0066 8.1504 24 8 1.5079 9.2505 8.1459 25 6 1.8281 9.8229 9.4154 26 6 0.6223 7.3899 6.9517 27 9 0.8347 8.0278 5.7798 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.0489 3.4032 -0.7830 34 1 3.1617 2.7642 1.0860 35 1 2.7255 1.2834 1.9721 36 1 0.3541 2.0069 2.0138 37 1 0.7903 3.4876 1.1277 38 1 2.4037 3.3272 3.4400 39 1 1.7189 5.4793 4.9104 40 1 1.2821 3.9988 5.7968 41 1 -1.0888 4.7222 5.8384 42 1 -0.6527 6.2030 4.9521 43 1 -0.5939 4.4861 8.1651 44 1 0.0009 5.5763 10.2890 45 1 0.9952 7.8283 10.2842 46 1 2.2574 10.8141 9.2692 47 1 0.9222 9.9048 10.0159 48 1 2.5485 9.1868 9.9296 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691022736.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:48 Heat of formation + Delta-G solvation = -106.243038 kcal Electronic energy + Delta-G solvation = -28677.313874 eV Core-core repulsion = 24453.595745 eV Total energy + Delta-G solvation = -4223.718129 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.85201 -41.07716 -40.67495 -38.75329 -38.09672 -35.62748 -34.81211 -33.84111 -31.61498 -31.23877 -30.58765 -29.16929 -28.18924 -26.40405 -25.43345 -23.56281 -23.35346 -22.19669 -22.11783 -21.22299 -19.13111 -18.72860 -18.13070 -18.02713 -17.76010 -17.17815 -17.07004 -16.81400 -16.56956 -16.04928 -15.85454 -15.70311 -15.49422 -15.44839 -15.09830 -14.81892 -14.44839 -14.12812 -14.01449 -13.85795 -13.67296 -13.56642 -13.24575 -13.03436 -13.01299 -12.93315 -12.66331 -12.50227 -12.37576 -12.29971 -12.09263 -12.03454 -11.98188 -11.95293 -11.67862 -11.50397 -10.92791 -10.56168 -10.00821 -9.76285 -9.22526 -8.61072 -7.87236 -5.50063 0.08077 0.25889 1.41720 1.46502 1.52512 1.66031 2.15869 2.25216 2.48818 2.58937 3.20270 3.26604 3.51554 3.77767 3.84468 3.89302 4.03514 4.03958 4.23988 4.26834 4.32711 4.37978 4.38490 4.43574 4.47405 4.49863 4.60312 4.71425 4.76645 4.82460 4.84923 4.86722 4.99079 5.07539 5.08534 5.13985 5.23518 5.29008 5.32534 5.44435 5.45424 5.56670 5.65625 5.68711 5.74554 6.30788 6.43765 6.62598 7.13557 7.29493 7.82145 8.33774 9.08298 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014998 B = 0.002212 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.509743 B =12654.282154 C =13863.779276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.268 4.268 5 H 0.052 0.948 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.950 3.050 9 H -0.292 1.292 10 H -0.288 1.288 11 H -0.271 1.271 12 C 0.144 3.856 13 C 0.119 3.881 14 N -0.715 5.715 15 C 0.505 3.495 16 O -0.591 6.591 17 C -0.122 4.122 18 C -0.060 4.060 19 C -0.082 4.082 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.182 4.182 23 C 0.082 3.918 24 O -0.341 6.341 25 C 0.017 3.983 26 C 0.031 3.969 27 F -0.153 7.153 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.053 0.947 33 H 0.254 0.746 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.024 0.976 38 H 0.412 0.588 39 H 0.097 0.903 40 H 0.130 0.870 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.158 0.842 44 H 0.169 0.831 45 H 0.166 0.834 46 H 0.114 0.886 47 H 0.072 0.928 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 7.026 27.924 29.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.069 0.931 6 C -0.228 4.228 7 N -0.554 5.554 8 Si 0.778 3.222 9 H -0.219 1.219 10 H -0.214 1.214 11 H -0.195 1.195 12 C 0.017 3.983 13 C -0.008 4.008 14 N -0.367 5.367 15 C 0.293 3.707 16 O -0.472 6.472 17 C -0.162 4.162 18 C -0.098 4.098 19 C -0.083 4.083 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.201 4.201 23 C 0.036 3.964 24 O -0.255 6.255 25 C -0.077 4.077 26 C 0.011 3.989 27 F -0.132 7.132 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.043 0.957 38 H 0.248 0.752 39 H 0.115 0.885 40 H 0.148 0.852 41 H 0.112 0.888 42 H 0.075 0.925 43 H 0.176 0.824 44 H 0.187 0.813 45 H 0.183 0.817 46 H 0.132 0.868 47 H 0.091 0.909 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.402 7.273 27.367 28.827 hybrid contribution 0.508 1.167 -1.181 1.737 sum -4.893 8.440 26.186 27.944 Atomic orbital electron populations 1.22216 0.97986 1.00884 1.00344 1.21020 0.93172 0.85361 0.99346 1.43861 1.76380 1.09702 1.01976 1.19161 1.04260 1.21709 0.94762 0.93058 1.25753 0.94072 1.02847 1.00089 1.70074 1.03540 1.37851 1.43885 0.85554 0.76833 0.80070 0.79739 1.21892 1.21412 1.19531 1.20929 0.94355 0.96764 0.86221 1.21902 0.99914 0.95259 0.83678 1.46022 1.14198 1.53077 1.23401 1.21298 0.84567 0.77977 0.86819 1.90661 1.22508 1.62596 1.71447 1.21613 0.99783 1.01349 0.93437 1.20176 0.97582 0.99506 0.92522 1.19802 0.99178 0.91879 0.97397 1.21239 1.01329 1.01492 0.90136 1.21447 0.94931 0.93567 0.99463 1.21517 1.04774 0.97488 0.96304 1.19231 0.97288 0.86363 0.93540 1.86115 1.76469 1.27927 1.35023 1.23422 1.01675 0.99751 0.82814 1.17329 1.08590 0.93364 0.79577 1.91441 1.93365 1.81961 1.46429 0.94812 0.91135 0.94033 0.94465 0.92844 0.93718 0.91036 0.93463 0.93190 0.95735 0.75157 0.88468 0.85183 0.88754 0.92505 0.82399 0.81309 0.81694 0.86781 0.90915 0.90880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.61 10.21 71.98 0.73 -4.88 16 2 C 0.14 5.62 6.44 86.38 0.56 6.18 16 3 N -0.60 -29.40 2.43 -701.99 -1.71 -31.11 16 4 C -0.27 -14.77 9.45 84.03 0.79 -13.98 16 5 H 0.05 2.87 7.92 -2.91 -0.02 2.85 16 6 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 7 N -0.91 -51.81 11.47 21.65 0.25 -51.57 16 8 Si 0.95 45.39 29.60 68.60 2.03 47.42 16 9 H -0.29 -14.16 7.11 99.48 0.71 -13.46 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 C 0.14 6.49 5.45 86.38 0.47 6.96 16 13 C 0.12 4.97 6.00 86.38 0.52 5.48 16 14 N -0.72 -23.91 5.56 -463.06 -2.57 -26.48 16 15 C 0.51 16.72 7.83 87.66 0.69 17.41 16 16 O -0.59 -24.72 15.98 -3.01 -0.05 -24.77 16 17 C -0.12 -2.83 5.68 29.84 0.17 -2.66 16 18 C -0.06 -1.43 4.41 29.84 0.13 -1.30 16 19 C -0.08 -1.67 5.14 -19.84 -0.10 -1.77 16 20 C -0.12 -1.69 9.68 22.28 0.22 -1.47 16 21 C -0.08 -0.77 10.04 22.26 0.22 -0.55 16 22 C -0.18 -2.26 9.04 22.36 0.20 -2.06 16 23 C 0.08 1.66 6.69 22.53 0.15 1.81 16 24 O -0.34 -7.03 10.36 -93.08 -0.96 -7.99 16 25 C 0.02 0.16 9.81 113.37 1.11 1.27 16 26 C 0.03 0.77 7.25 22.45 0.16 0.93 16 27 F -0.15 -4.72 16.41 44.97 0.74 -3.98 16 28 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 30 H 0.04 1.52 6.64 -2.39 -0.02 1.50 16 31 H 0.04 1.58 8.08 -2.39 -0.02 1.56 16 32 H 0.05 1.99 7.83 -2.39 -0.02 1.97 16 33 H 0.25 13.96 8.31 -92.71 -0.77 13.18 16 34 H 0.07 3.66 5.52 -2.39 -0.01 3.64 16 35 H 0.05 1.92 7.86 -2.39 -0.02 1.90 16 36 H 0.05 2.10 6.64 -2.39 -0.02 2.08 16 37 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.41 11.29 8.47 -92.71 -0.79 10.51 16 39 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.09 2.10 8.01 -2.39 -0.02 2.08 16 42 H 0.06 1.67 7.74 -2.39 -0.02 1.65 16 43 H 0.16 1.42 8.06 -2.91 -0.02 1.39 16 44 H 0.17 0.49 8.06 -2.91 -0.02 0.47 16 45 H 0.17 0.98 6.30 -2.91 -0.02 0.96 16 46 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.07 0.42 7.66 -2.39 -0.02 0.41 16 48 H 0.07 0.43 7.66 -2.39 -0.02 0.41 16 Total: -1.00 -74.73 400.82 4.35 -70.38 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.18 Total: 17.94 kcal Atomic # 6 Polarization: 3.72 SS G_CDS: 6.45 Total: 10.16 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.03 Total: -109.16 kcal Atomic # 8 Polarization: -31.75 SS G_CDS: -1.01 Total: -32.76 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 0.74 Total: -3.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -74.73 4.35 -70.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691022736.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.866 kcal (2) G-P(sol) polarization free energy of solvation -74.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds