Wall clock time and date at job start Tue Mar 31 2020 21:42:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00211 * 2 1 4 4 C 1.52994 * 109.47035 * 84.51135 * 3 2 1 5 5 H 1.09006 * 112.73673 * 312.83792 * 4 3 2 6 6 C 1.53497 * 113.47109 * 83.65926 * 4 3 2 7 7 C 1.53245 * 83.42944 * 140.67789 * 6 4 3 8 8 N 1.47066 * 113.46627 * 182.10083 * 4 3 2 9 9 C 1.36936 * 136.06222 * 38.05705 * 8 4 3 10 10 H 1.08000 * 119.99630 * 352.92316 * 9 8 4 11 11 C 1.38808 * 120.00199 * 173.19717 * 9 8 4 12 12 N 1.31625 * 119.99998 * 163.52150 * 11 9 8 13 13 Si 1.86799 * 120.00025 * 343.52092 * 11 9 8 14 14 H 1.48495 * 109.47242 * 86.36124 * 13 11 9 15 15 H 1.48506 * 109.47009 * 206.35984 * 13 11 9 16 16 H 1.48499 * 109.47183 * 326.36235 * 13 11 9 17 17 C 1.34784 * 119.99476 * 179.97438 * 2 1 3 18 18 O 1.21279 * 119.99274 * 179.97438 * 17 2 1 19 19 C 1.50694 * 120.00074 * 0.02562 * 17 2 1 20 20 C 1.50696 * 109.46999 * 179.97438 * 19 17 2 21 21 C 1.39372 * 119.51033 * 90.00125 * 20 19 17 22 22 C 1.36088 * 120.99652 * 180.02562 * 21 20 19 23 23 C 1.40543 * 119.65066 * 359.97438 * 22 21 20 24 24 C 1.40545 * 121.28564 * 180.02562 * 23 22 21 25 25 C 1.36098 * 119.64714 * 179.97438 * 24 23 22 26 26 C 1.39372 * 120.99324 * 0.02562 * 25 24 23 27 27 C 1.36090 * 120.98631 * 0.02562 * 26 25 24 28 28 C 1.40533 * 119.65738 * 359.94984 * 27 26 25 29 29 C 1.36097 * 119.50791 * 269.72979 * 20 19 17 30 30 H 1.08996 * 109.46874 * 95.37394 * 1 2 3 31 31 H 1.08996 * 109.47519 * 215.38103 * 1 2 3 32 32 H 1.09002 * 109.46951 * 335.38102 * 1 2 3 33 33 H 1.09004 * 109.47131 * 324.50695 * 3 2 1 34 34 H 1.09005 * 109.46849 * 204.50663 * 3 2 1 35 35 H 1.09000 * 114.20924 * 254.43276 * 6 4 3 36 36 H 1.08997 * 114.20170 * 27.06435 * 6 4 3 37 37 H 1.08997 * 113.38293 * 219.29627 * 7 6 4 38 38 H 1.08994 * 113.46755 * 88.93156 * 7 6 4 39 39 H 0.96995 * 119.99560 * 180.02562 * 12 11 9 40 40 H 1.08994 * 109.47256 * 300.00251 * 19 17 2 41 41 H 1.09009 * 109.47024 * 60.00014 * 19 17 2 42 42 H 1.08010 * 119.49958 * 359.97438 * 21 20 19 43 43 H 1.07997 * 120.17686 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.17791 * 359.96421 * 24 23 22 45 45 H 1.07995 * 119.50176 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.50723 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.17024 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.17024 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3331 1.7793 1.4358 5 1 1.3938 1.7397 1.9875 6 6 3.5159 1.1624 2.1950 7 6 3.6708 2.5814 2.7524 8 7 3.0151 3.0786 1.5334 9 6 3.0355 4.2387 0.8061 10 1 2.5247 4.2892 -0.1442 11 6 3.7173 5.3478 1.2874 12 7 4.0175 6.3393 0.4755 13 14 4.2088 5.4333 3.0876 14 1 5.5189 4.7599 3.2755 15 1 4.3187 6.8546 3.5037 16 1 3.1797 4.7535 3.9146 17 6 2.1388 -1.1673 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6178 0.0005 21 6 2.8105 -4.1396 1.2134 22 6 3.6949 -5.1734 1.2487 23 6 4.1672 -5.7258 0.0458 24 6 5.0804 -6.7941 0.0421 25 6 5.5155 -7.3038 -1.1424 26 6 5.0694 -6.7820 -2.3554 27 6 4.1862 -5.7472 -2.3905 28 6 3.7141 -5.1948 -1.1876 29 6 2.7958 -4.1309 -1.1839 30 1 -0.3633 -0.0962 -1.0231 31 1 -0.3634 -0.8378 0.5950 32 1 -0.3633 0.9343 0.4281 33 1 1.6546 2.0018 -0.5967 34 1 3.1891 1.1157 -0.4263 35 1 3.2307 0.4170 2.9375 36 1 4.3384 0.8412 1.5560 37 1 4.7095 2.8982 2.8466 38 1 3.0920 2.7572 3.6591 39 1 4.4942 7.1142 0.8118 40 1 0.7583 -2.5298 0.8902 41 1 0.7589 -2.5302 -0.8898 42 1 2.4495 -3.7166 2.1393 43 1 4.0321 -5.5672 2.1961 44 1 5.4351 -7.2082 0.9743 45 1 6.2169 -8.1249 -1.1425 46 1 5.4307 -7.2046 -3.2813 47 1 3.8496 -5.3527 -3.3379 48 1 2.4378 -3.7196 -2.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691413997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:42:00 Heat of formation + Delta-G solvation = 76.603206 kcal Electronic energy + Delta-G solvation = -28409.320797 eV Core-core repulsion = 24624.300701 eV Total energy + Delta-G solvation = -3785.020096 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.67608 -39.76973 -38.31906 -36.80840 -35.23564 -33.15314 -32.26496 -31.92282 -29.76877 -29.10414 -28.34978 -27.37329 -26.16827 -23.57793 -23.29064 -22.94629 -22.11400 -21.95477 -19.36390 -19.02363 -17.52507 -17.12790 -17.07733 -16.67530 -16.42161 -15.71412 -15.66720 -15.05378 -14.85340 -14.55482 -14.07667 -13.92254 -13.71333 -13.53515 -13.44233 -13.16822 -13.00439 -12.92334 -12.79511 -12.44500 -12.31467 -12.02875 -11.86319 -11.81332 -11.51453 -11.36410 -11.14650 -11.04518 -10.96689 -10.67568 -10.21224 -10.14147 -10.11003 -9.93168 -9.64232 -9.30478 -8.88043 -8.65562 -8.33985 -8.01868 -7.15315 -5.87808 -3.18314 0.39404 0.85471 1.92040 2.75917 2.78074 3.21296 3.39031 3.47300 3.48843 3.97343 4.37160 4.48870 4.58182 4.66586 4.67031 4.73372 4.83308 4.84748 5.00063 5.02794 5.11808 5.18770 5.23657 5.29739 5.32136 5.34580 5.35621 5.41807 5.60009 5.65416 5.75897 5.80568 5.88255 5.90017 5.92738 6.06746 6.08714 6.17814 6.27995 6.29954 6.41522 6.44022 6.46066 6.49797 6.56369 6.65437 6.68191 6.85671 7.13833 7.17448 7.55504 8.33980 8.38312 8.69047 9.66744 10.36094 11.28849 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.002364 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.992125 B =11839.275543 C =12225.948156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.115 3.885 4 C 0.136 3.864 5 H 0.046 0.954 6 C -0.143 4.143 7 C 0.096 3.904 8 N -0.618 5.618 9 C -0.221 4.221 10 H 0.100 0.900 11 C 0.015 3.985 12 N -0.920 5.920 13 Si 0.884 3.116 14 H -0.287 1.287 15 H -0.300 1.300 16 H -0.272 1.272 17 C 0.511 3.489 18 O -0.523 6.523 19 C -0.104 4.104 20 C -0.056 4.056 21 C -0.096 4.096 22 C -0.108 4.108 23 C -0.052 4.052 24 C -0.106 4.106 25 C -0.121 4.121 26 C -0.121 4.121 27 C -0.104 4.104 28 C -0.048 4.048 29 C -0.093 4.093 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.056 0.944 36 H 0.089 0.911 37 H 0.052 0.948 38 H 0.040 0.960 39 H 0.262 0.738 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.122 0.878 43 H 0.126 0.874 44 H 0.125 0.875 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.125 0.875 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.465 -28.457 -1.863 29.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.347 5.347 3 C -0.008 4.008 4 C 0.028 3.972 5 H 0.063 0.937 6 C -0.181 4.181 7 C -0.029 4.029 8 N -0.346 5.346 9 C -0.347 4.347 10 H 0.117 0.883 11 C -0.183 4.183 12 N -0.566 5.566 13 Si 0.715 3.285 14 H -0.214 1.214 15 H -0.228 1.228 16 H -0.198 1.198 17 C 0.298 3.702 18 O -0.399 6.399 19 C -0.143 4.143 20 C -0.056 4.056 21 C -0.114 4.114 22 C -0.126 4.126 23 C -0.052 4.052 24 C -0.124 4.124 25 C -0.139 4.139 26 C -0.139 4.139 27 C -0.122 4.122 28 C -0.048 4.048 29 C -0.111 4.111 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.095 0.905 33 H 0.093 0.907 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.108 0.892 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.140 0.860 43 H 0.144 0.856 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.139 0.861 47 H 0.143 0.857 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.744 -28.026 -2.025 28.680 hybrid contribution 0.090 0.476 1.108 1.209 sum -5.654 -27.550 -0.917 28.139 Atomic orbital electron populations 1.21796 0.79963 1.03392 1.01495 1.47887 1.06777 1.06485 1.73550 1.21816 0.97995 0.82551 0.98411 1.22351 0.94854 0.86224 0.93779 0.93707 1.23454 0.99502 0.95626 0.99551 1.22515 0.97432 0.91987 0.90958 1.46167 1.49390 1.12448 1.26553 1.18589 1.30031 0.86312 0.99747 0.88266 1.24666 0.99601 0.96019 0.97970 1.69765 1.43476 1.09392 1.33953 0.86807 0.78634 0.75851 0.87206 1.21378 1.22790 1.19770 1.20396 0.88173 0.84815 0.76826 1.90743 1.13625 1.87024 1.48477 1.20771 0.97614 0.90939 1.05012 1.19017 0.97724 0.95507 0.93394 1.20700 0.97332 0.95989 0.97393 1.20953 0.97607 0.97035 0.96991 1.18097 0.97589 0.96493 0.93015 1.21028 0.97010 0.95926 0.98452 1.20826 1.00262 1.00290 0.92523 1.20825 0.97993 0.97106 0.98013 1.21038 0.97613 0.96444 0.97092 1.18035 0.97440 0.96369 0.92974 1.20821 0.96854 0.95645 0.97811 0.92686 0.91523 0.90475 0.90670 0.89066 0.92588 0.89249 0.93038 0.94261 0.92786 0.88011 0.88142 0.86011 0.85575 0.85717 0.86171 0.86130 0.85661 0.85760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.71 10.16 59.85 0.61 1.32 16 2 N -0.61 -8.30 2.87 -181.57 -0.52 -8.82 16 3 C 0.12 2.03 5.37 -4.04 -0.02 2.01 16 4 C 0.14 2.66 4.32 -72.39 -0.31 2.34 16 5 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 6 C -0.14 -2.74 7.93 -26.35 -0.21 -2.95 16 7 C 0.10 2.15 5.61 -8.63 -0.05 2.10 16 8 N -0.62 -15.22 3.50 -177.14 -0.62 -15.84 16 9 C -0.22 -6.31 10.96 -15.06 -0.17 -6.47 16 10 H 0.10 2.94 8.06 -52.49 -0.42 2.52 16 11 C 0.01 0.43 5.50 -17.43 -0.10 0.34 16 12 N -0.92 -28.95 13.97 55.49 0.78 -28.17 16 13 Si 0.88 23.21 25.10 -169.99 -4.27 18.94 16 14 H -0.29 -7.44 6.76 56.52 0.38 -7.06 16 15 H -0.30 -7.93 7.11 56.52 0.40 -7.53 16 16 H -0.27 -6.89 6.06 56.52 0.34 -6.55 16 17 C 0.51 7.11 7.67 -10.99 -0.08 7.03 16 18 O -0.52 -9.55 15.46 5.56 0.09 -9.46 16 19 C -0.10 -0.99 4.42 -29.04 -0.13 -1.12 16 20 C -0.06 -0.63 4.34 -104.97 -0.46 -1.08 16 21 C -0.10 -1.04 9.58 -39.93 -0.38 -1.43 16 22 C -0.11 -1.14 9.77 -39.49 -0.39 -1.52 16 23 C -0.05 -0.59 5.74 -106.83 -0.61 -1.20 16 24 C -0.11 -1.00 9.77 -39.48 -0.39 -1.39 16 25 C -0.12 -1.04 9.95 -39.93 -0.40 -1.44 16 26 C -0.12 -1.06 9.95 -39.93 -0.40 -1.46 16 27 C -0.10 -1.03 9.77 -39.49 -0.39 -1.41 16 28 C -0.05 -0.56 5.74 -106.84 -0.61 -1.17 16 29 C -0.09 -1.05 9.37 -39.48 -0.37 -1.42 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 6.66 -51.93 -0.35 0.09 16 32 H 0.08 0.75 8.03 -51.93 -0.42 0.33 16 33 H 0.07 1.35 8.11 -51.93 -0.42 0.93 16 34 H 0.09 1.85 7.05 -51.93 -0.37 1.48 16 35 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.09 1.83 7.97 -51.93 -0.41 1.42 16 37 H 0.05 1.21 6.15 -51.93 -0.32 0.89 16 38 H 0.04 0.86 7.19 -51.93 -0.37 0.49 16 39 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 40 H 0.10 0.74 7.35 -51.93 -0.38 0.36 16 41 H 0.10 0.73 8.03 -51.92 -0.42 0.32 16 42 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 43 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 44 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 45 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 47 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 48 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 LS Contribution 390.51 15.07 5.88 5.88 Total: -1.00 -35.63 390.51 -10.83 -46.46 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -7.32 Total: -0.07 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -4.84 Total: -8.92 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -0.37 Total: -52.83 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: 0.09 Total: -9.46 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.27 Total: 18.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.63 -10.83 -46.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691413997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.058 kcal (2) G-P(sol) polarization free energy of solvation -35.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds