Wall clock time and date at job start Tue Mar 31 2020 21:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46502 * 120.00211 * 2 1 4 4 C 1.52994 * 109.47035 * 84.51135 * 3 2 1 5 5 H 1.09006 * 112.73673 * 312.83792 * 4 3 2 6 6 C 1.53497 * 113.47109 * 83.65926 * 4 3 2 7 7 C 1.53245 * 83.42944 * 140.67789 * 6 4 3 8 8 N 1.47066 * 113.46627 * 182.10083 * 4 3 2 9 9 C 1.36936 * 136.06222 * 38.05705 * 8 4 3 10 10 H 1.08000 * 119.99630 * 352.92316 * 9 8 4 11 11 C 1.38808 * 120.00199 * 173.19717 * 9 8 4 12 12 N 1.31625 * 119.99998 * 163.52150 * 11 9 8 13 13 Si 1.86799 * 120.00025 * 343.52092 * 11 9 8 14 14 H 1.48495 * 109.47242 * 86.36124 * 13 11 9 15 15 H 1.48506 * 109.47009 * 206.35984 * 13 11 9 16 16 H 1.48499 * 109.47183 * 326.36235 * 13 11 9 17 17 C 1.34784 * 119.99476 * 179.97438 * 2 1 3 18 18 O 1.21279 * 119.99274 * 179.97438 * 17 2 1 19 19 C 1.50694 * 120.00074 * 0.02562 * 17 2 1 20 20 C 1.50696 * 109.46999 * 179.97438 * 19 17 2 21 21 C 1.39372 * 119.51033 * 90.00125 * 20 19 17 22 22 C 1.36088 * 120.99652 * 180.02562 * 21 20 19 23 23 C 1.40543 * 119.65066 * 359.97438 * 22 21 20 24 24 C 1.40545 * 121.28564 * 180.02562 * 23 22 21 25 25 C 1.36098 * 119.64714 * 179.97438 * 24 23 22 26 26 C 1.39372 * 120.99324 * 0.02562 * 25 24 23 27 27 C 1.36090 * 120.98631 * 0.02562 * 26 25 24 28 28 C 1.40533 * 119.65738 * 359.94984 * 27 26 25 29 29 C 1.36097 * 119.50791 * 269.72979 * 20 19 17 30 30 H 1.08996 * 109.46874 * 95.37394 * 1 2 3 31 31 H 1.08996 * 109.47519 * 215.38103 * 1 2 3 32 32 H 1.09002 * 109.46951 * 335.38102 * 1 2 3 33 33 H 1.09004 * 109.47131 * 324.50695 * 3 2 1 34 34 H 1.09005 * 109.46849 * 204.50663 * 3 2 1 35 35 H 1.09000 * 114.20924 * 254.43276 * 6 4 3 36 36 H 1.08997 * 114.20170 * 27.06435 * 6 4 3 37 37 H 1.08997 * 113.38293 * 219.29627 * 7 6 4 38 38 H 1.08994 * 113.46755 * 88.93156 * 7 6 4 39 39 H 0.96995 * 119.99560 * 180.02562 * 12 11 9 40 40 H 1.08994 * 109.47256 * 300.00251 * 19 17 2 41 41 H 1.09009 * 109.47024 * 60.00014 * 19 17 2 42 42 H 1.08010 * 119.49958 * 359.97438 * 21 20 19 43 43 H 1.07997 * 120.17686 * 179.97438 * 22 21 20 44 44 H 1.07996 * 120.17791 * 359.96421 * 24 23 22 45 45 H 1.07995 * 119.50176 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.50723 * 179.97438 * 26 25 24 47 47 H 1.08004 * 120.17024 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.17024 * 359.97438 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3331 1.7793 1.4358 5 1 1.3938 1.7397 1.9875 6 6 3.5159 1.1624 2.1950 7 6 3.6708 2.5814 2.7524 8 7 3.0151 3.0786 1.5334 9 6 3.0355 4.2387 0.8061 10 1 2.5247 4.2892 -0.1442 11 6 3.7173 5.3478 1.2874 12 7 4.0175 6.3393 0.4755 13 14 4.2088 5.4333 3.0876 14 1 5.5189 4.7599 3.2755 15 1 4.3187 6.8546 3.5037 16 1 3.1797 4.7535 3.9146 17 6 2.1388 -1.1673 0.0005 18 8 3.3516 -1.1673 0.0001 19 6 1.3853 -2.4723 0.0005 20 6 2.3645 -3.6178 0.0005 21 6 2.8105 -4.1396 1.2134 22 6 3.6949 -5.1734 1.2487 23 6 4.1672 -5.7258 0.0458 24 6 5.0804 -6.7941 0.0421 25 6 5.5155 -7.3038 -1.1424 26 6 5.0694 -6.7820 -2.3554 27 6 4.1862 -5.7472 -2.3905 28 6 3.7141 -5.1948 -1.1876 29 6 2.7958 -4.1309 -1.1839 30 1 -0.3633 -0.0962 -1.0231 31 1 -0.3634 -0.8378 0.5950 32 1 -0.3633 0.9343 0.4281 33 1 1.6546 2.0018 -0.5967 34 1 3.1891 1.1157 -0.4263 35 1 3.2307 0.4170 2.9375 36 1 4.3384 0.8412 1.5560 37 1 4.7095 2.8982 2.8466 38 1 3.0920 2.7572 3.6591 39 1 4.4942 7.1142 0.8118 40 1 0.7583 -2.5298 0.8902 41 1 0.7589 -2.5302 -0.8898 42 1 2.4495 -3.7166 2.1393 43 1 4.0321 -5.5672 2.1961 44 1 5.4351 -7.2082 0.9743 45 1 6.2169 -8.1249 -1.1425 46 1 5.4307 -7.2046 -3.2813 47 1 3.8496 -5.3527 -3.3379 48 1 2.4378 -3.7196 -2.1162 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691413997.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:41:59 Heat of formation + Delta-G solvation = 55.920556 kcal Electronic energy + Delta-G solvation = -28410.217664 eV Core-core repulsion = 24624.300701 eV Total energy + Delta-G solvation = -3785.916963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.50776 -40.89281 -39.85287 -37.57612 -36.38760 -34.43255 -33.88750 -32.73367 -30.74932 -30.39812 -30.02791 -28.21536 -27.18124 -25.21195 -24.50341 -24.15179 -22.94606 -22.79974 -21.10604 -20.11761 -18.88920 -18.24810 -17.93130 -17.79638 -17.51167 -17.19883 -16.78059 -16.44993 -15.75576 -15.60056 -15.44305 -15.06993 -14.97362 -14.59048 -14.42019 -14.20694 -14.16292 -13.99441 -13.83894 -13.75254 -13.48950 -13.40745 -13.06406 -12.86525 -12.76120 -12.59408 -12.46611 -12.09579 -12.07334 -11.95085 -11.87830 -11.80695 -11.66953 -11.14259 -11.00103 -10.89559 -10.69979 -9.60217 -9.40657 -9.16684 -8.74712 -8.14204 -5.40359 -0.33136 0.10808 1.17235 1.29893 1.33254 1.41956 1.74285 1.92638 2.24977 2.41965 3.00705 3.14822 3.22709 3.63551 3.66551 3.75281 3.87837 4.00620 4.09307 4.15033 4.18206 4.29368 4.32127 4.32905 4.37796 4.42798 4.50865 4.54207 4.54735 4.61466 4.66097 4.70627 4.77643 4.83789 4.92710 4.92913 4.98861 5.01641 5.08769 5.18966 5.20434 5.36359 5.38683 5.46497 5.58355 5.62543 5.68125 5.71257 5.97855 6.14544 6.15515 6.50145 6.53044 7.30097 7.43837 8.28281 9.06188 Molecular weight = 338.17amu Principal moments of inertia in cm(-1) A = 0.018393 B = 0.002364 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.992125 B =11839.275543 C =12225.948156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.611 5.611 3 C 0.128 3.872 4 C 0.140 3.860 5 H 0.071 0.929 6 C -0.121 4.121 7 C 0.089 3.911 8 N -0.647 5.647 9 C -0.202 4.202 10 H 0.074 0.926 11 C -0.052 4.052 12 N -0.969 5.969 13 Si 0.944 3.056 14 H -0.285 1.285 15 H -0.305 1.305 16 H -0.253 1.253 17 C 0.508 3.492 18 O -0.574 6.574 19 C -0.091 4.091 20 C -0.069 4.069 21 C -0.111 4.111 22 C -0.116 4.116 23 C -0.076 4.076 24 C -0.117 4.117 25 C -0.125 4.125 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.073 4.073 29 C -0.109 4.109 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.057 0.943 39 H 0.260 0.740 40 H 0.134 0.866 41 H 0.128 0.872 42 H 0.137 0.863 43 H 0.145 0.855 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.137 0.863 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.944 -31.383 -0.335 32.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.344 5.344 3 C 0.003 3.997 4 C 0.034 3.966 5 H 0.088 0.912 6 C -0.159 4.159 7 C -0.035 4.035 8 N -0.375 5.375 9 C -0.330 4.330 10 H 0.091 0.909 11 C -0.244 4.244 12 N -0.618 5.618 13 Si 0.773 3.227 14 H -0.212 1.212 15 H -0.233 1.233 16 H -0.177 1.177 17 C 0.297 3.703 18 O -0.453 6.453 19 C -0.130 4.130 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.134 4.134 23 C -0.076 4.076 24 C -0.135 4.135 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.073 4.073 29 C -0.127 4.127 30 H 0.091 0.909 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.089 0.911 37 H 0.054 0.946 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.152 0.848 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.163 0.837 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.162 0.838 47 H 0.155 0.845 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.285 -31.019 -0.479 31.866 hybrid contribution 0.547 1.231 0.525 1.446 sum -6.738 -29.788 0.046 30.540 Atomic orbital electron populations 1.22118 0.76847 1.04771 1.03471 1.47924 1.08504 1.04774 1.73188 1.21334 0.96867 0.84557 0.96926 1.22558 0.95663 0.83271 0.95124 0.91177 1.23221 0.98545 0.94697 0.99457 1.22718 0.96555 0.93532 0.90727 1.46305 1.51132 1.12599 1.27478 1.18536 1.27775 0.87508 0.99162 0.90867 1.25362 1.00989 0.96237 1.01842 1.69903 1.45778 1.10393 1.35710 0.85844 0.78688 0.75527 0.82624 1.21248 1.23313 1.17729 1.21187 0.87810 0.85956 0.75347 1.90729 1.16095 1.87755 1.50742 1.20796 0.97129 0.87304 1.07794 1.19254 0.98265 0.96005 0.93444 1.20972 0.97666 0.96297 0.97977 1.21262 0.97458 0.97035 0.97663 1.18439 0.98415 0.97400 0.93307 1.21336 0.96755 0.95622 0.99803 1.21204 1.00236 1.00670 0.92181 1.21192 0.97215 0.96506 0.99254 1.21294 0.98323 0.97144 0.97237 1.18364 0.98078 0.96980 0.93874 1.21052 0.97212 0.95993 0.98475 0.90913 0.87911 0.90893 0.91565 0.92536 0.89028 0.91146 0.94622 0.92506 0.93133 0.84833 0.85450 0.84546 0.83687 0.83767 0.83616 0.83799 0.84467 0.85003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 10.16 127.77 1.30 2.32 16 2 N -0.61 -15.25 2.87 -846.75 -2.43 -17.68 16 3 C 0.13 4.48 5.37 86.38 0.46 4.94 16 4 C 0.14 5.26 4.32 41.79 0.18 5.44 16 5 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 6 C -0.12 -4.40 7.93 30.84 0.24 -4.16 16 7 C 0.09 3.83 5.61 83.10 0.47 4.29 16 8 N -0.65 -31.57 3.50 -714.33 -2.50 -34.06 16 9 C -0.20 -11.79 10.96 84.03 0.92 -10.87 16 10 H 0.07 4.52 8.06 -2.91 -0.02 4.50 16 11 C -0.05 -3.14 5.50 84.86 0.47 -2.67 16 12 N -0.97 -63.00 13.97 21.65 0.30 -62.69 16 13 Si 0.94 48.34 25.10 68.60 1.72 50.06 16 14 H -0.29 -14.39 6.76 99.48 0.67 -13.72 16 15 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 16 H -0.25 -11.98 6.06 99.48 0.60 -11.38 16 17 C 0.51 13.18 7.67 87.65 0.67 13.85 16 18 O -0.57 -20.84 15.46 -3.03 -0.05 -20.89 16 19 C -0.09 -1.45 4.42 29.10 0.13 -1.33 16 20 C -0.07 -1.44 4.34 -20.09 -0.09 -1.53 16 21 C -0.11 -2.25 9.58 22.04 0.21 -2.03 16 22 C -0.12 -2.33 9.77 22.33 0.22 -2.11 16 23 C -0.08 -1.66 5.74 -21.30 -0.12 -1.78 16 24 C -0.12 -2.07 9.77 22.33 0.22 -1.85 16 25 C -0.13 -1.94 9.95 22.04 0.22 -1.72 16 26 C -0.12 -2.00 9.95 22.04 0.22 -1.78 16 27 C -0.12 -2.35 9.77 22.33 0.22 -2.13 16 28 C -0.07 -1.67 5.74 -21.30 -0.12 -1.80 16 29 C -0.11 -2.41 9.37 22.33 0.21 -2.20 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.81 6.66 -2.39 -0.02 0.79 16 32 H 0.07 1.17 8.03 -2.39 -0.02 1.15 16 33 H 0.07 2.41 8.11 -2.38 -0.02 2.39 16 34 H 0.06 2.37 7.05 -2.38 -0.02 2.35 16 35 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.86 7.97 -2.39 -0.02 2.85 16 37 H 0.04 1.64 6.15 -2.39 -0.01 1.62 16 38 H 0.06 2.28 7.19 -2.39 -0.02 2.26 16 39 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 40 H 0.13 1.29 7.35 -2.39 -0.02 1.27 16 41 H 0.13 1.36 8.03 -2.38 -0.02 1.34 16 42 H 0.14 2.20 8.06 -2.91 -0.02 2.17 16 43 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 45 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 46 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 47 H 0.14 2.12 8.06 -2.91 -0.02 2.09 16 48 H 0.13 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -81.03 390.51 3.88 -77.15 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.81 Total: 15.24 kcal Atomic # 6 Polarization: -13.15 SS G_CDS: 6.02 Total: -7.13 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -4.63 Total: -114.44 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.89 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.72 Total: 50.06 kcal Total: -81.03 3.88 -77.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691413997.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.073 kcal (2) G-P(sol) polarization free energy of solvation -81.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds