Wall clock time and date at job start Tue Mar 31 2020 21:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35953 * 116.99494 * 2 1 4 4 C 1.38659 * 120.06597 * 0.02562 * 3 2 1 5 5 C 1.38181 * 119.96748 * 179.70160 * 4 3 2 6 6 C 1.38265 * 120.09636 * 0.55082 * 5 4 3 7 7 C 1.50699 * 119.93941 * 179.72288 * 6 5 4 8 8 C 1.53002 * 109.47301 * 269.73064 * 7 6 5 9 9 C 1.50700 * 109.46927 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00478 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47391 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47112 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.47100 * 64.99897 * 13 12 11 16 16 C 1.53003 * 109.47014 * 184.99488 * 13 12 11 17 17 N 1.46499 * 109.46708 * 174.99880 * 16 13 12 18 18 C 1.36935 * 119.99926 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99572 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99815 * 22 20 18 26 26 C 1.38254 * 120.12513 * 359.44928 * 6 5 4 27 27 C 1.38332 * 120.02972 * 0.27242 * 26 6 5 28 28 F 1.35103 * 120.04750 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47429 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46582 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47173 * 299.99450 * 1 2 3 32 32 H 1.07996 * 120.01805 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.95519 * 180.29813 * 5 4 3 34 34 H 1.09001 * 109.47294 * 149.72369 * 7 6 5 35 35 H 1.09011 * 109.46925 * 29.72791 * 7 6 5 36 36 H 1.08996 * 109.47119 * 59.99693 * 8 7 6 37 37 H 1.09005 * 109.46529 * 299.99514 * 8 7 6 38 38 H 0.97005 * 120.00431 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47266 * 59.99449 * 12 11 9 40 40 H 1.08997 * 109.46950 * 299.99791 * 12 11 9 41 41 H 1.08999 * 109.47109 * 59.99648 * 15 13 12 42 42 H 1.08996 * 109.47478 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.47003 * 300.00163 * 15 13 12 44 44 H 1.08998 * 109.46692 * 55.00382 * 16 13 12 45 45 H 1.08994 * 109.47584 * 295.00246 * 16 13 12 46 46 H 0.97005 * 120.00261 * 0.02562 * 17 16 13 47 47 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.07996 * 119.98827 * 180.25026 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0068 6 6 3.3023 3.6778 0.0010 7 6 3.9849 5.0213 0.0015 8 6 4.2157 5.4766 -1.4408 9 6 4.8978 6.8205 -1.4402 10 8 5.1719 7.3610 -0.3897 11 7 5.2033 7.4216 -2.6072 12 6 5.8668 8.7276 -2.6067 13 6 6.0987 9.1825 -4.0490 14 1 6.6526 8.4137 -4.5878 15 6 4.7502 9.4138 -4.7339 16 6 6.9013 10.4851 -4.0502 17 7 7.2259 10.8573 -5.4294 18 6 7.9450 11.9953 -5.6803 19 1 8.2725 12.6187 -4.8614 20 6 8.2574 12.3451 -6.9868 21 7 7.8629 11.5827 -7.9844 22 14 9.2390 13.8972 -7.3290 23 1 9.5596 14.5730 -6.0462 24 1 10.4989 13.5416 -8.0299 25 1 8.4384 14.8110 -8.1829 26 6 4.0579 2.5200 0.0004 27 6 3.4333 1.2857 0.0000 28 9 4.1714 0.1540 -0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2137 2.3201 0.0005 33 1 1.3341 4.5115 0.0121 34 1 4.9429 4.9419 0.5153 35 1 3.3560 5.7481 0.5158 36 1 3.2577 5.5561 -1.9545 37 1 4.8446 4.7498 -1.9550 38 1 4.9844 6.9891 -3.4475 39 1 6.8247 8.6484 -2.0926 40 1 5.2378 9.4545 -2.0928 41 1 4.1962 10.1825 -4.1950 42 1 4.9153 9.7374 -5.7615 43 1 4.1783 8.4859 -4.7330 44 1 7.8229 10.3444 -3.4854 45 1 6.3102 11.2766 -3.5897 46 1 6.9314 10.2976 -6.1650 47 1 8.0814 11.8269 -8.8974 48 1 5.1362 2.5792 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698756629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:02 Heat of formation + Delta-G solvation = -102.513314 kcal Electronic energy + Delta-G solvation = -27507.344034 eV Core-core repulsion = 23283.787638 eV Total energy + Delta-G solvation = -4223.556396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.12837 -40.57739 -39.82584 -38.28153 -36.87306 -34.38772 -33.84970 -32.48902 -31.20644 -30.27914 -29.69343 -27.93311 -26.58301 -25.55696 -24.26143 -23.24887 -22.43294 -21.51246 -20.53616 -19.75161 -18.78775 -17.57027 -17.41260 -17.12468 -16.66053 -16.58227 -16.06987 -15.81612 -15.46236 -15.28598 -14.85306 -14.71171 -14.65761 -14.46947 -13.86448 -13.77026 -13.56377 -13.15261 -13.04971 -12.99962 -12.63826 -12.55878 -12.40995 -12.27353 -12.05171 -11.90532 -11.61489 -11.40997 -11.31304 -11.07502 -10.93076 -10.72366 -10.58306 -10.43395 -10.07189 -9.88121 -9.67663 -9.39711 -9.04572 -8.89212 -8.56247 -6.93305 -5.78288 -3.06614 0.66006 0.74035 2.58181 2.63637 2.99048 3.21961 3.42850 3.48930 3.50926 3.77346 4.18032 4.24734 4.44537 4.58483 4.61081 4.63226 4.68054 4.74881 4.82578 4.89967 4.94552 5.03348 5.08109 5.20126 5.28944 5.37070 5.41127 5.45251 5.56938 5.60221 5.69351 5.79628 5.81168 5.94610 5.98210 6.09144 6.09860 6.17018 6.22949 6.37390 6.47358 6.63509 6.75937 6.77189 6.85345 7.46110 7.70141 8.17035 8.40848 9.52288 10.09526 10.44275 11.44773 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.001425 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.014396 B =19640.399912 C =19764.397037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.089 3.911 4 C -0.179 4.179 5 C -0.084 4.084 6 C -0.088 4.088 7 C -0.062 4.062 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.544 6.544 11 N -0.726 5.726 12 C 0.126 3.874 13 C -0.111 4.111 14 H 0.076 0.924 15 C -0.141 4.141 16 C 0.160 3.840 17 N -0.731 5.731 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.014 4.014 21 N -0.934 5.934 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C -0.112 4.112 27 C 0.071 3.929 28 F -0.133 7.133 29 H 0.058 0.942 30 H 0.103 0.897 31 H 0.058 0.942 32 H 0.138 0.862 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.095 0.905 37 H 0.095 0.905 38 H 0.401 0.599 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.069 0.931 43 H 0.042 0.958 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.254 0.746 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.405 -23.567 16.809 33.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.043 3.957 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.089 4.089 7 C -0.099 4.099 8 C -0.177 4.177 9 C 0.295 3.705 10 O -0.422 6.422 11 N -0.377 5.377 12 C 0.002 3.998 13 C -0.130 4.130 14 H 0.094 0.906 15 C -0.199 4.199 16 C 0.032 3.968 17 N -0.375 5.375 18 C -0.370 4.370 19 H 0.089 0.911 20 C -0.210 4.210 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.130 4.130 27 C 0.051 3.949 28 F -0.111 7.111 29 H 0.077 0.923 30 H 0.121 0.879 31 H 0.076 0.924 32 H 0.156 0.844 33 H 0.152 0.848 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.113 0.887 38 H 0.235 0.765 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.061 0.939 44 H 0.039 0.961 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.064 0.936 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.998 -23.243 17.595 33.746 hybrid contribution 0.201 0.345 -1.044 1.118 sum -16.798 -22.898 16.551 32.869 Atomic orbital electron populations 1.23130 0.77809 1.04370 1.01568 1.86142 1.21812 1.25818 1.88722 1.19033 0.90857 0.85706 1.00087 1.21146 1.00340 0.91420 1.06883 1.20968 0.93948 0.97382 0.97959 1.19684 0.93329 0.94806 1.01040 1.20297 1.01775 0.92144 0.95707 1.21678 1.02256 0.94793 0.98966 1.20622 0.78943 0.87117 0.83787 1.90712 1.53944 1.66269 1.31275 1.46111 1.61348 1.21727 1.08540 1.21414 0.97439 0.83426 0.97510 1.21555 0.97787 0.99716 0.93924 0.90550 1.21789 0.95648 1.00280 1.02136 1.20577 0.95350 0.91971 0.88900 1.42344 1.65742 1.28256 1.01200 1.19294 1.25848 0.99815 0.92024 0.91088 1.24732 1.01598 0.99098 0.95587 1.69665 1.51283 1.38975 0.98389 0.86111 0.79483 0.82804 0.77779 1.20527 1.21876 1.21882 1.20969 1.01217 0.89666 1.01187 1.16970 0.85939 0.83033 1.08926 1.91510 1.76375 1.49000 1.94245 0.92328 0.87907 0.92378 0.84427 0.84796 0.89774 0.89696 0.88687 0.88656 0.76483 0.91398 0.91386 0.92843 0.91170 0.93919 0.96135 0.96010 0.78221 0.93588 0.83825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.10 9.81 101.05 0.99 1.10 16 2 O -0.31 -2.65 10.36 -19.59 -0.20 -2.86 16 3 C 0.09 0.76 6.69 -39.18 -0.26 0.50 16 4 C -0.18 -1.14 9.04 -39.45 -0.36 -1.50 16 5 C -0.08 -0.52 9.69 -39.59 -0.38 -0.91 16 6 C -0.09 -0.62 5.13 -104.61 -0.54 -1.16 16 7 C -0.06 -0.46 4.63 -27.88 -0.13 -0.59 16 8 C -0.14 -0.98 5.68 -27.88 -0.16 -1.14 16 9 C 0.51 5.65 7.83 -10.99 -0.09 5.56 16 10 O -0.54 -8.22 15.98 5.56 0.09 -8.13 16 11 N -0.73 -7.75 5.28 -60.30 -0.32 -8.07 16 12 C 0.13 1.67 5.06 -4.04 -0.02 1.65 16 13 C -0.11 -1.65 2.46 -90.62 -0.22 -1.88 16 14 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 15 C -0.14 -2.01 8.94 37.16 0.33 -1.68 16 16 C 0.16 3.14 5.65 -4.04 -0.02 3.12 16 17 N -0.73 -18.15 5.33 -59.91 -0.32 -18.47 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 20 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 21 N -0.93 -27.99 13.06 55.49 0.72 -27.26 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 C -0.11 -0.87 9.67 -39.54 -0.38 -1.26 16 27 C 0.07 0.67 7.31 -39.30 -0.29 0.38 16 28 F -0.13 -1.46 17.11 2.25 0.04 -1.42 16 29 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.17 7.66 -51.93 -0.40 -0.23 16 32 H 0.14 0.54 6.30 -52.49 -0.33 0.21 16 33 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.08 0.69 8.04 -51.93 -0.42 0.27 16 35 H 0.08 0.66 8.04 -51.92 -0.42 0.25 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.40 3.37 7.66 -40.82 -0.31 3.06 16 39 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.07 1.18 7.18 -51.93 -0.37 0.81 16 43 H 0.04 0.48 7.18 -51.93 -0.37 0.11 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.38 9.90 6.85 -40.82 -0.28 9.62 16 47 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 403.21 15.07 6.08 6.08 Total: -1.00 -34.32 403.21 -8.20 -42.52 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -7.50 Total: 5.37 kcal Atomic # 6 Polarization: -3.34 SS G_CDS: -1.77 Total: -5.11 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: 0.09 Total: -53.80 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: -0.11 Total: -10.98 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.42 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.32 -8.20 -42.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.990 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds