Wall clock time and date at job start Tue Mar 31 2020 21:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35953 * 116.99494 * 2 1 4 4 C 1.38659 * 120.06597 * 0.02562 * 3 2 1 5 5 C 1.38181 * 119.96748 * 179.70160 * 4 3 2 6 6 C 1.38265 * 120.09636 * 0.55082 * 5 4 3 7 7 C 1.50699 * 119.93941 * 179.72288 * 6 5 4 8 8 C 1.53002 * 109.47301 * 269.73064 * 7 6 5 9 9 C 1.50700 * 109.46927 * 179.97438 * 8 7 6 10 10 O 1.21277 * 120.00478 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99623 * 179.97438 * 9 8 7 12 12 C 1.46497 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.53001 * 109.47391 * 179.97438 * 12 11 9 14 14 H 1.09001 * 109.47112 * 305.00167 * 13 12 11 15 15 C 1.53001 * 109.47100 * 64.99897 * 13 12 11 16 16 C 1.53003 * 109.47014 * 184.99488 * 13 12 11 17 17 N 1.46499 * 109.46708 * 174.99880 * 16 13 12 18 18 C 1.36935 * 119.99926 * 180.02562 * 17 16 13 19 19 H 1.08005 * 119.99877 * 359.97438 * 18 17 16 20 20 C 1.38811 * 120.00369 * 179.73019 * 18 17 16 21 21 N 1.31617 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00451 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47045 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47426 * 119.99572 * 22 20 18 25 25 H 1.48501 * 109.46833 * 239.99815 * 22 20 18 26 26 C 1.38254 * 120.12513 * 359.44928 * 6 5 4 27 27 C 1.38332 * 120.02972 * 0.27242 * 26 6 5 28 28 F 1.35103 * 120.04750 * 179.97438 * 27 26 6 29 29 H 1.09000 * 109.47429 * 59.99921 * 1 2 3 30 30 H 1.08999 * 109.46582 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47173 * 299.99450 * 1 2 3 32 32 H 1.07996 * 120.01805 * 359.97438 * 4 3 2 33 33 H 1.07998 * 119.95519 * 180.29813 * 5 4 3 34 34 H 1.09001 * 109.47294 * 149.72369 * 7 6 5 35 35 H 1.09011 * 109.46925 * 29.72791 * 7 6 5 36 36 H 1.08996 * 109.47119 * 59.99693 * 8 7 6 37 37 H 1.09005 * 109.46529 * 299.99514 * 8 7 6 38 38 H 0.97005 * 120.00431 * 359.97438 * 11 9 8 39 39 H 1.09001 * 109.47266 * 59.99449 * 12 11 9 40 40 H 1.08997 * 109.46950 * 299.99791 * 12 11 9 41 41 H 1.08999 * 109.47109 * 59.99648 * 15 13 12 42 42 H 1.08996 * 109.47478 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.47003 * 300.00163 * 15 13 12 44 44 H 1.08998 * 109.46692 * 55.00382 * 16 13 12 45 45 H 1.08994 * 109.47584 * 295.00246 * 16 13 12 46 46 H 0.97005 * 120.00261 * 0.02562 * 17 16 13 47 47 H 0.97004 * 120.00382 * 180.02562 * 21 20 18 48 48 H 1.07996 * 119.98827 * 180.25026 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2922 2.3751 0.0005 5 6 1.9215 3.6053 0.0068 6 6 3.3023 3.6778 0.0010 7 6 3.9849 5.0213 0.0015 8 6 4.2157 5.4766 -1.4408 9 6 4.8978 6.8205 -1.4402 10 8 5.1719 7.3610 -0.3897 11 7 5.2033 7.4216 -2.6072 12 6 5.8668 8.7276 -2.6067 13 6 6.0987 9.1825 -4.0490 14 1 6.6526 8.4137 -4.5878 15 6 4.7502 9.4138 -4.7339 16 6 6.9013 10.4851 -4.0502 17 7 7.2259 10.8573 -5.4294 18 6 7.9450 11.9953 -5.6803 19 1 8.2725 12.6187 -4.8614 20 6 8.2574 12.3451 -6.9868 21 7 7.8629 11.5827 -7.9844 22 14 9.2390 13.8972 -7.3290 23 1 9.5596 14.5730 -6.0462 24 1 10.4989 13.5416 -8.0299 25 1 8.4384 14.8110 -8.1829 26 6 4.0579 2.5200 0.0004 27 6 3.4333 1.2857 0.0000 28 9 4.1714 0.1540 -0.0011 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.2137 2.3201 0.0005 33 1 1.3341 4.5115 0.0121 34 1 4.9429 4.9419 0.5153 35 1 3.3560 5.7481 0.5158 36 1 3.2577 5.5561 -1.9545 37 1 4.8446 4.7498 -1.9550 38 1 4.9844 6.9891 -3.4475 39 1 6.8247 8.6484 -2.0926 40 1 5.2378 9.4545 -2.0928 41 1 4.1962 10.1825 -4.1950 42 1 4.9153 9.7374 -5.7615 43 1 4.1783 8.4859 -4.7330 44 1 7.8229 10.3444 -3.4854 45 1 6.3102 11.2766 -3.5897 46 1 6.9314 10.2976 -6.1650 47 1 8.0814 11.8269 -8.8974 48 1 5.1362 2.5792 0.0000 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698756629.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:01 Heat of formation + Delta-G solvation = -124.652340 kcal Electronic energy + Delta-G solvation = -27508.304054 eV Core-core repulsion = 23283.787638 eV Total energy + Delta-G solvation = -4224.516416 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.84133 -41.14038 -40.69277 -38.85421 -38.18879 -35.94164 -34.49606 -34.02259 -31.93233 -31.72433 -30.42790 -28.40043 -27.69834 -27.05646 -25.26423 -24.03392 -23.77266 -22.16162 -21.55486 -20.93068 -19.29995 -19.19493 -18.14372 -17.97618 -17.51655 -17.22071 -17.13180 -16.70118 -16.42674 -16.05198 -15.87313 -15.80377 -15.49322 -15.31801 -15.17568 -14.95296 -14.66713 -14.31360 -14.08081 -13.78692 -13.64499 -13.53891 -13.35409 -13.05336 -12.95565 -12.86952 -12.82170 -12.41811 -12.16463 -12.12772 -12.11089 -11.97511 -11.87291 -11.85628 -11.68875 -11.64011 -10.95271 -10.84610 -10.02829 -9.93842 -9.12374 -8.98921 -7.95582 -5.23616 0.12119 0.19558 1.48225 1.48363 1.58680 1.72546 2.20292 2.24129 2.54711 2.58583 3.21248 3.38486 3.62476 3.74356 3.76042 3.93730 3.98618 4.07105 4.09849 4.20979 4.30809 4.31251 4.37246 4.39102 4.40784 4.53328 4.57155 4.72373 4.72835 4.74372 4.84274 4.88489 4.93224 4.96172 5.07216 5.10546 5.14546 5.18916 5.23753 5.36958 5.45831 5.50641 5.53647 5.55645 5.67337 6.27415 6.29271 6.62980 7.32747 7.34368 8.09697 8.33929 9.28017 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.027444 B = 0.001425 C = 0.001416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.014396 B =19640.399912 C =19764.397037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.338 6.338 3 C 0.079 3.921 4 C -0.175 4.175 5 C -0.078 4.078 6 C -0.088 4.088 7 C -0.056 4.056 8 C -0.127 4.127 9 C 0.508 3.492 10 O -0.588 6.588 11 N -0.717 5.717 12 C 0.138 3.862 13 C -0.094 4.094 14 H 0.077 0.923 15 C -0.135 4.135 16 C 0.155 3.845 17 N -0.741 5.741 18 C -0.247 4.247 19 H 0.073 0.927 20 C -0.073 4.073 21 N -0.967 5.967 22 Si 0.972 3.028 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.292 1.292 26 C -0.114 4.114 27 C 0.038 3.962 28 F -0.151 7.151 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.071 0.929 32 H 0.164 0.836 33 H 0.159 0.841 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.415 0.585 39 H 0.057 0.943 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.040 0.960 43 H 0.078 0.922 44 H 0.018 0.982 45 H 0.021 0.979 46 H 0.377 0.623 47 H 0.251 0.749 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.068 -23.731 17.205 34.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.253 6.253 3 C 0.032 3.968 4 C -0.193 4.193 5 C -0.096 4.096 6 C -0.089 4.089 7 C -0.094 4.094 8 C -0.167 4.167 9 C 0.297 3.703 10 O -0.468 6.468 11 N -0.370 5.370 12 C 0.013 3.987 13 C -0.114 4.114 14 H 0.096 0.904 15 C -0.192 4.192 16 C 0.028 3.972 17 N -0.384 5.384 18 C -0.379 4.379 19 H 0.091 0.909 20 C -0.265 4.265 21 N -0.618 5.618 22 Si 0.801 3.199 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.219 1.219 26 C -0.132 4.132 27 C 0.018 3.982 28 F -0.130 7.130 29 H 0.090 0.910 30 H 0.134 0.866 31 H 0.089 0.911 32 H 0.182 0.818 33 H 0.176 0.824 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.130 0.870 38 H 0.252 0.748 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.059 0.941 43 H 0.097 0.903 44 H 0.036 0.964 45 H 0.039 0.961 46 H 0.209 0.791 47 H 0.060 0.940 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -18.680 -23.427 18.008 34.958 hybrid contribution 0.657 0.370 -1.092 1.327 sum -18.023 -23.057 16.916 33.803 Atomic orbital electron populations 1.23424 0.75701 1.05789 1.02815 1.86109 1.24132 1.26250 1.88771 1.19262 0.90771 0.86552 1.00166 1.21433 1.01554 0.90579 1.05760 1.21280 0.93688 0.98266 0.96354 1.19652 0.93789 0.94076 1.01376 1.20207 1.01175 0.92195 0.95815 1.21693 1.03336 0.92397 0.99249 1.21297 0.78136 0.88013 0.82885 1.90701 1.55732 1.67608 1.32789 1.45987 1.60826 1.20724 1.09437 1.21085 0.97172 0.84730 0.95703 1.21335 0.97516 0.97231 0.95272 0.90422 1.21723 0.95474 1.02027 1.00003 1.20740 0.95879 0.94342 0.86192 1.42512 1.65412 1.27490 1.03031 1.19675 1.25409 1.00586 0.92215 0.90878 1.25520 1.03225 1.02244 0.95531 1.69806 1.52822 1.40699 0.98485 0.85097 0.77736 0.79284 0.77791 1.19244 1.22001 1.21939 1.21068 1.01694 0.89499 1.00965 1.17342 0.86699 0.83019 1.11149 1.91452 1.76883 1.49980 1.94644 0.91008 0.86610 0.91065 0.81827 0.82376 0.91033 0.89922 0.86056 0.86964 0.74824 0.92504 0.91917 0.92998 0.94057 0.90314 0.96408 0.96119 0.79075 0.93974 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.56 10.36 -93.03 -0.96 -6.53 16 3 C 0.08 1.28 6.69 22.53 0.15 1.43 16 4 C -0.17 -1.79 9.04 22.36 0.20 -1.59 16 5 C -0.08 -0.74 9.69 22.26 0.22 -0.52 16 6 C -0.09 -1.08 5.13 -19.85 -0.10 -1.18 16 7 C -0.06 -0.72 4.63 29.85 0.14 -0.59 16 8 C -0.13 -1.45 5.68 29.85 0.17 -1.28 16 9 C 0.51 10.23 7.83 87.66 0.69 10.92 16 10 O -0.59 -17.17 15.98 -3.02 -0.05 -17.22 16 11 N -0.72 -13.62 5.28 -463.07 -2.45 -16.07 16 12 C 0.14 3.47 5.06 86.38 0.44 3.90 16 13 C -0.09 -2.72 2.46 -10.79 -0.03 -2.75 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C -0.13 -3.64 8.94 71.98 0.64 -2.99 16 16 C 0.16 6.07 5.65 86.38 0.49 6.55 16 17 N -0.74 -37.04 5.33 -343.46 -1.83 -38.87 16 18 C -0.25 -13.81 9.99 84.03 0.84 -12.97 16 19 H 0.07 3.97 7.83 -2.91 -0.02 3.94 16 20 C -0.07 -4.16 5.50 84.86 0.47 -3.70 16 21 N -0.97 -58.50 13.06 21.65 0.28 -58.22 16 22 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 C -0.11 -1.70 9.67 22.30 0.22 -1.49 16 27 C 0.04 0.71 7.31 22.45 0.16 0.87 16 28 F -0.15 -3.47 17.11 44.97 0.77 -2.70 16 29 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 30 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.25 7.66 -2.39 -0.02 0.23 16 32 H 0.16 0.73 6.30 -2.91 -0.02 0.71 16 33 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 34 H 0.07 1.11 8.04 -2.39 -0.02 1.09 16 35 H 0.08 1.12 8.04 -2.38 -0.02 1.10 16 36 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.41 5.61 7.66 -92.70 -0.71 4.90 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.04 1.37 7.18 -2.39 -0.02 1.35 16 43 H 0.08 1.54 7.18 -2.38 -0.02 1.52 16 44 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.38 19.69 6.85 -92.70 -0.63 19.05 16 47 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 48 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -75.36 403.21 3.23 -72.13 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.37 Total: 23.57 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.80 Total: -4.16 kcal Atomic # 7 Polarization: -109.17 SS G_CDS: -3.99 Total: -113.16 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.01 Total: -23.75 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.77 Total: -2.70 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -75.36 3.23 -72.13 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698756629.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.518 kcal (2) G-P(sol) polarization free energy of solvation -75.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds