Wall clock time and date at job start Tue Mar 31 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46717 * 2 1 4 4 C 1.46498 * 119.99721 * 269.99792 * 3 2 1 5 5 C 1.52999 * 109.47446 * 270.00144 * 4 3 2 6 6 N 1.46498 * 109.47446 * 180.02562 * 5 4 3 7 7 C 1.36945 * 119.99920 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.38806 * 119.99671 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00269 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99760 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47511 * 90.00213 * 11 9 7 13 13 H 1.48505 * 109.47166 * 210.00377 * 11 9 7 14 14 H 1.48495 * 109.47337 * 329.99995 * 11 9 7 15 15 C 1.34767 * 120.00077 * 90.00394 * 3 2 1 16 16 O 1.21285 * 120.00371 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00401 * 359.97438 * 15 3 2 18 18 C 1.52995 * 109.47338 * 180.02562 * 17 15 3 19 19 C 1.50702 * 109.46958 * 180.02562 * 18 17 15 20 20 C 1.38263 * 119.93682 * 270.02149 * 19 18 17 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99990 * 19 18 17 28 28 H 1.08999 * 109.47537 * 60.00470 * 1 2 3 29 29 H 1.09007 * 109.46918 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47352 * 299.99933 * 1 2 3 31 31 H 1.09001 * 109.47062 * 239.99817 * 2 1 3 32 32 H 1.08998 * 109.46893 * 119.99919 * 2 1 3 33 33 H 1.09002 * 109.47637 * 30.00060 * 4 3 2 34 34 H 1.09003 * 109.47115 * 150.00377 * 4 3 2 35 35 H 1.08996 * 109.47291 * 300.00721 * 5 4 3 36 36 H 1.09003 * 109.46774 * 60.00023 * 5 4 3 37 37 H 0.96996 * 119.99942 * 0.02562 * 6 5 4 38 38 H 0.96998 * 119.99869 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.46883 * 59.99685 * 17 15 3 40 40 H 1.09007 * 109.46669 * 300.00388 * 17 15 3 41 41 H 1.08994 * 109.47278 * 59.99950 * 18 17 15 42 42 H 1.08994 * 109.47039 * 299.99507 * 18 17 15 43 43 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 44 44 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 46 46 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 47 47 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 48 48 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7105 6 7 3.9517 2.5225 -2.9789 7 6 5.1842 2.4505 -3.5715 8 1 5.9759 1.8840 -3.1041 9 6 5.4154 3.1049 -4.7737 10 7 4.4504 3.7950 -5.3437 11 14 7.0964 3.0061 -5.5824 12 1 7.1379 1.8367 -6.4968 13 1 7.3473 4.2486 -6.3561 14 1 8.1404 2.8545 -4.5374 15 6 2.2429 2.0166 1.1671 16 8 2.6475 3.1599 1.1672 17 6 1.9913 1.3064 2.4723 18 6 2.3223 2.2440 3.6351 19 6 2.0713 1.5335 4.9403 20 6 0.8265 1.6068 5.5375 21 6 0.5929 0.9571 6.7344 22 6 1.6079 0.2300 7.3376 23 8 1.3785 -0.4147 8.5123 24 6 0.0696 -0.2954 9.0730 25 6 2.8578 0.1564 6.7358 26 9 3.8492 -0.5515 7.3201 27 6 3.0861 0.8093 5.5379 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0285 34 1 2.0954 3.1411 -1.1385 35 1 4.3882 2.2155 -0.9508 36 1 3.8744 0.7622 -1.8408 37 1 3.2407 3.0317 -3.3986 38 1 4.6122 4.2525 -6.1835 39 1 2.6212 0.4187 2.5302 40 1 0.9432 1.0125 2.5298 41 1 1.6921 3.1314 3.5770 42 1 3.3702 2.5381 3.5777 43 1 0.0355 2.1726 5.0678 44 1 -0.3802 1.0148 7.1996 45 1 -0.1479 0.7548 9.2678 46 1 -0.6637 -0.6942 8.3720 47 1 0.0217 -0.8560 10.0065 48 1 4.0574 0.7530 5.0690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699192198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:18 Heat of formation + Delta-G solvation = -87.616072 kcal Electronic energy + Delta-G solvation = -28408.532375 eV Core-core repulsion = 24185.621972 eV Total energy + Delta-G solvation = -4222.910403 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.06083 -40.52529 -39.90173 -38.21414 -36.22971 -34.62842 -33.73318 -31.75971 -31.13307 -30.29851 -29.87749 -28.09278 -27.28426 -24.86012 -23.67179 -23.17487 -23.11650 -21.69712 -21.10848 -18.83238 -18.72808 -17.46119 -17.33603 -17.10259 -16.71134 -16.54257 -16.08086 -15.52297 -15.39493 -15.22029 -14.71160 -14.60693 -14.50736 -14.08221 -13.94718 -13.62767 -13.54900 -13.25601 -13.05503 -12.91638 -12.88079 -12.58105 -12.44444 -12.35860 -11.96507 -11.75970 -11.55400 -11.40292 -11.29238 -11.25124 -11.03622 -10.95439 -10.85904 -10.64597 -10.09289 -9.77381 -9.61132 -9.32164 -8.85034 -8.50547 -8.48883 -6.90788 -5.74057 -3.03149 0.73272 0.81601 2.69063 2.75704 3.01533 3.20074 3.45875 3.50997 3.53191 3.83814 4.23568 4.27452 4.48083 4.63163 4.64883 4.67076 4.76265 4.78834 4.84470 4.89868 4.94594 4.98441 5.09125 5.12396 5.27788 5.35327 5.49885 5.52013 5.55313 5.63315 5.65714 5.68372 5.68562 5.77500 5.84999 5.94434 6.04602 6.07945 6.17269 6.19098 6.24917 6.59420 6.77098 6.83402 6.94335 7.54072 7.72507 8.32011 8.44656 9.55423 10.11882 10.46891 11.48848 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001862 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.673341 B =15030.513055 C =15718.250823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.102 3.898 3 N -0.608 5.608 4 C 0.108 3.892 5 C 0.143 3.857 6 N -0.730 5.730 7 C -0.238 4.238 8 H 0.070 0.930 9 C -0.014 4.014 10 N -0.933 5.933 11 Si 0.909 3.091 12 H -0.290 1.290 13 H -0.291 1.291 14 H -0.282 1.282 15 C 0.510 3.490 16 O -0.534 6.534 17 C -0.134 4.134 18 C -0.064 4.064 19 C -0.085 4.085 20 C -0.085 4.085 21 C -0.179 4.179 22 C 0.088 3.912 23 O -0.312 6.312 24 C 0.026 3.974 25 C 0.072 3.928 26 F -0.133 7.133 27 C -0.112 4.112 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.022 0.978 36 H 0.017 0.983 37 H 0.384 0.616 38 H 0.255 0.745 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.137 0.863 45 H 0.057 0.943 46 H 0.057 0.943 47 H 0.102 0.898 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -10.546 27.765 33.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.021 4.021 3 N -0.341 5.341 4 C -0.015 4.015 5 C 0.015 3.985 6 N -0.375 5.375 7 C -0.369 4.369 8 H 0.088 0.912 9 C -0.210 4.210 10 N -0.582 5.582 11 Si 0.740 3.260 12 H -0.217 1.217 13 H -0.217 1.217 14 H -0.208 1.208 15 C 0.297 3.703 16 O -0.410 6.410 17 C -0.174 4.174 18 C -0.102 4.102 19 C -0.086 4.086 20 C -0.103 4.103 21 C -0.198 4.198 22 C 0.042 3.958 23 O -0.225 6.225 24 C -0.068 4.068 25 C 0.052 3.948 26 F -0.112 7.112 27 C -0.130 4.130 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.040 0.960 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.103 0.897 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.076 0.924 46 H 0.076 0.924 47 H 0.120 0.880 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.863 -10.116 27.871 32.731 hybrid contribution 0.530 -0.069 -0.575 0.785 sum -13.333 -10.185 27.296 32.040 Atomic orbital electron populations 1.22217 0.95979 1.02165 1.02575 1.21591 0.94290 0.82698 1.03547 1.47966 1.65607 1.14199 1.06349 1.21684 0.98052 0.98386 0.83361 1.20901 0.92824 0.95427 0.89371 1.42212 1.12877 1.60734 1.21684 1.19212 0.89310 1.26030 1.02336 0.91207 1.24748 0.97859 1.00355 0.98063 1.69664 1.31590 1.37409 1.19556 0.86161 0.83677 0.76954 0.79234 1.21728 1.21719 1.20757 1.20600 0.77524 0.86816 0.85333 1.90743 1.45038 1.17930 1.87288 1.21718 1.03860 0.99829 0.91985 1.20331 1.04278 0.97181 0.88376 1.19707 0.92983 0.98554 0.97327 1.20960 0.96796 0.98251 0.94307 1.21133 0.98845 1.01657 0.98181 1.19018 0.93406 0.95827 0.87555 1.86134 1.33642 1.68595 1.34154 1.23117 0.82342 1.02358 0.99029 1.16966 0.83872 0.99613 0.94381 1.91507 1.59581 1.76345 1.83718 1.20992 1.01122 0.97431 0.93492 0.91992 0.91549 0.92617 0.89805 0.90465 0.90641 0.89769 0.95973 0.96527 0.78287 0.93513 0.88796 0.88885 0.89689 0.89657 0.84843 0.84488 0.92403 0.92391 0.87955 0.83767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 10.24 37.16 0.38 -0.98 16 2 C 0.10 0.98 5.93 -4.04 -0.02 0.96 16 3 N -0.61 -8.23 2.47 -173.69 -0.43 -8.66 16 4 C 0.11 1.84 5.52 -4.04 -0.02 1.82 16 5 C 0.14 3.05 6.58 -4.04 -0.03 3.02 16 6 N -0.73 -19.24 5.60 -59.91 -0.34 -19.58 16 7 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 10 N -0.93 -28.74 13.06 55.49 0.72 -28.02 16 11 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.51 7.11 7.67 -10.99 -0.08 7.02 16 16 O -0.53 -9.83 15.56 5.55 0.09 -9.74 16 17 C -0.13 -1.23 4.23 -27.88 -0.12 -1.35 16 18 C -0.06 -0.59 4.63 -27.88 -0.13 -0.72 16 19 C -0.09 -0.71 5.13 -104.61 -0.54 -1.24 16 20 C -0.08 -0.60 9.69 -39.60 -0.38 -0.99 16 21 C -0.18 -1.26 9.04 -39.45 -0.36 -1.62 16 22 C 0.09 0.81 6.69 -39.17 -0.26 0.55 16 23 O -0.31 -2.81 10.36 -19.58 -0.20 -3.02 16 24 C 0.03 0.12 9.81 101.05 0.99 1.11 16 25 C 0.07 0.73 7.31 -39.30 -0.29 0.45 16 26 F -0.13 -1.56 17.11 2.25 0.04 -1.52 16 27 C -0.11 -1.00 9.67 -39.54 -0.38 -1.38 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.42 8.14 -51.92 -0.42 -0.01 16 30 H 0.05 0.42 7.22 -51.93 -0.37 0.04 16 31 H 0.08 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.08 0.58 6.44 -51.93 -0.33 0.25 16 33 H 0.08 1.19 8.07 -51.93 -0.42 0.78 16 34 H 0.08 1.61 7.42 -51.93 -0.39 1.22 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.48 7.67 -40.82 -0.31 10.17 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.09 0.75 7.40 -51.93 -0.38 0.36 16 40 H 0.09 0.67 7.19 -51.92 -0.37 0.30 16 41 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 42 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.14 0.62 6.30 -52.48 -0.33 0.29 16 45 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 46 H 0.06 0.19 7.65 -51.93 -0.40 -0.21 16 47 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 48 H 0.14 1.15 8.06 -52.48 -0.42 0.72 16 LS Contribution 402.85 15.07 6.07 6.07 Total: -1.00 -35.70 402.85 -8.03 -43.73 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -7.47 Total: 3.78 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -1.49 Total: -0.92 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: -0.04 Total: -56.26 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: -0.12 Total: -12.76 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.70 -8.03 -43.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699192198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.886 kcal (2) G-P(sol) polarization free energy of solvation -35.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds