Wall clock time and date at job start Tue Mar 31 2020 21:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46501 * 109.46717 * 2 1 4 4 C 1.46498 * 119.99721 * 269.99792 * 3 2 1 5 5 C 1.52999 * 109.47446 * 270.00144 * 4 3 2 6 6 N 1.46498 * 109.47446 * 180.02562 * 5 4 3 7 7 C 1.36945 * 119.99920 * 179.97438 * 6 5 4 8 8 H 1.07996 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.38806 * 119.99671 * 179.97438 * 7 6 5 10 10 N 1.31624 * 120.00269 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 119.99760 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47511 * 90.00213 * 11 9 7 13 13 H 1.48505 * 109.47166 * 210.00377 * 11 9 7 14 14 H 1.48495 * 109.47337 * 329.99995 * 11 9 7 15 15 C 1.34767 * 120.00077 * 90.00394 * 3 2 1 16 16 O 1.21285 * 120.00371 * 179.97438 * 15 3 2 17 17 C 1.50702 * 120.00401 * 359.97438 * 15 3 2 18 18 C 1.52995 * 109.47338 * 180.02562 * 17 15 3 19 19 C 1.50702 * 109.46958 * 180.02562 * 18 17 15 20 20 C 1.38263 * 119.93682 * 270.02149 * 19 18 17 21 21 C 1.38176 * 120.09586 * 180.02562 * 20 19 18 22 22 C 1.38664 * 119.97332 * 359.97378 * 21 20 19 23 23 O 1.35948 * 120.06477 * 180.28026 * 22 21 20 24 24 C 1.42895 * 117.00499 * 359.72167 * 23 22 21 25 25 C 1.38915 * 119.86796 * 359.97438 * 22 21 20 26 26 F 1.35098 * 120.04463 * 180.02562 * 25 22 21 27 27 C 1.38254 * 119.93981 * 89.99990 * 19 18 17 28 28 H 1.08999 * 109.47537 * 60.00470 * 1 2 3 29 29 H 1.09007 * 109.46918 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47352 * 299.99933 * 1 2 3 31 31 H 1.09001 * 109.47062 * 239.99817 * 2 1 3 32 32 H 1.08998 * 109.46893 * 119.99919 * 2 1 3 33 33 H 1.09002 * 109.47637 * 30.00060 * 4 3 2 34 34 H 1.09003 * 109.47115 * 150.00377 * 4 3 2 35 35 H 1.08996 * 109.47291 * 300.00721 * 5 4 3 36 36 H 1.09003 * 109.46774 * 60.00023 * 5 4 3 37 37 H 0.96996 * 119.99942 * 0.02562 * 6 5 4 38 38 H 0.96998 * 119.99869 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.46883 * 59.99685 * 17 15 3 40 40 H 1.09007 * 109.46669 * 300.00388 * 17 15 3 41 41 H 1.08994 * 109.47278 * 59.99950 * 18 17 15 42 42 H 1.08994 * 109.47039 * 299.99507 * 18 17 15 43 43 H 1.07999 * 119.95092 * 0.02562 * 20 19 18 44 44 H 1.08008 * 120.01550 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.46836 * 300.00713 * 24 23 22 46 46 H 1.09001 * 109.46915 * 60.00028 * 24 23 22 47 47 H 1.08996 * 109.47572 * 179.97438 * 24 23 22 48 48 H 1.08004 * 119.98065 * 359.97438 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0718 -1.2687 5 6 3.7074 1.8315 -1.7105 6 7 3.9517 2.5225 -2.9789 7 6 5.1842 2.4505 -3.5715 8 1 5.9759 1.8840 -3.1041 9 6 5.4154 3.1049 -4.7737 10 7 4.4504 3.7950 -5.3437 11 14 7.0964 3.0061 -5.5824 12 1 7.1379 1.8367 -6.4968 13 1 7.3473 4.2486 -6.3561 14 1 8.1404 2.8545 -4.5374 15 6 2.2429 2.0166 1.1671 16 8 2.6475 3.1599 1.1672 17 6 1.9913 1.3064 2.4723 18 6 2.3223 2.2440 3.6351 19 6 2.0713 1.5335 4.9403 20 6 0.8265 1.6068 5.5375 21 6 0.5929 0.9571 6.7344 22 6 1.6079 0.2300 7.3376 23 8 1.3785 -0.4147 8.5123 24 6 0.0696 -0.2954 9.0730 25 6 2.8578 0.1564 6.7358 26 9 3.8492 -0.5515 7.3201 27 6 3.0861 0.8093 5.5379 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.5816 1.6877 -2.0285 34 1 2.0954 3.1411 -1.1385 35 1 4.3882 2.2155 -0.9508 36 1 3.8744 0.7622 -1.8408 37 1 3.2407 3.0317 -3.3986 38 1 4.6122 4.2525 -6.1835 39 1 2.6212 0.4187 2.5302 40 1 0.9432 1.0125 2.5298 41 1 1.6921 3.1314 3.5770 42 1 3.3702 2.5381 3.5777 43 1 0.0355 2.1726 5.0678 44 1 -0.3802 1.0148 7.1996 45 1 -0.1479 0.7548 9.2678 46 1 -0.6637 -0.6942 8.3720 47 1 0.0217 -0.8560 10.0065 48 1 4.0574 0.7530 5.0690 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699192198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:18 Heat of formation + Delta-G solvation = -109.965579 kcal Electronic energy + Delta-G solvation = -28409.501523 eV Core-core repulsion = 24185.621972 eV Total energy + Delta-G solvation = -4223.879550 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.84037 -41.24695 -40.86096 -38.84065 -37.52955 -36.35716 -34.59809 -33.52342 -31.73029 -31.54126 -30.65035 -29.17222 -28.13480 -26.11336 -25.01018 -24.15238 -23.77251 -23.13872 -22.00017 -19.97992 -19.30583 -19.15124 -18.26421 -17.98416 -17.54096 -17.34946 -17.13969 -16.64369 -16.44668 -16.04532 -15.80239 -15.51039 -15.41124 -15.18467 -15.15851 -14.97907 -14.71418 -14.55530 -14.25508 -13.80366 -13.71083 -13.38344 -13.10718 -13.05629 -12.91575 -12.90769 -12.76469 -12.61303 -12.38550 -12.29704 -12.16035 -12.14187 -12.02814 -11.88293 -11.84735 -11.73344 -10.99066 -10.79857 -9.94067 -9.69060 -9.12359 -9.07517 -7.98924 -5.29733 0.12054 0.19281 1.45353 1.48106 1.56606 1.67579 1.99168 2.21423 2.52595 2.55995 3.20155 3.34146 3.47488 3.71660 3.86325 3.99449 4.04294 4.08448 4.17375 4.19687 4.23003 4.27445 4.31453 4.38869 4.40605 4.47705 4.52761 4.56758 4.62975 4.67277 4.74180 4.84886 4.92182 4.92840 5.02605 5.08304 5.09799 5.11884 5.18467 5.21860 5.42233 5.43119 5.55263 5.60107 5.66581 6.22633 6.30017 6.48063 7.23291 7.28737 8.00656 8.26004 9.24323 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.001862 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.673341 B =15030.513055 C =15718.250823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.095 3.905 3 N -0.606 5.606 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.743 5.743 7 C -0.252 4.252 8 H 0.073 0.927 9 C -0.073 4.073 10 N -0.967 5.967 11 Si 0.978 3.022 12 H -0.281 1.281 13 H -0.292 1.292 14 H -0.273 1.273 15 C 0.503 3.497 16 O -0.587 6.587 17 C -0.122 4.122 18 C -0.058 4.058 19 C -0.087 4.087 20 C -0.076 4.076 21 C -0.173 4.173 22 C 0.081 3.919 23 O -0.337 6.337 24 C 0.016 3.984 25 C 0.039 3.961 26 F -0.150 7.150 27 C -0.115 4.115 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.058 0.942 35 H -0.001 1.001 36 H 0.028 0.972 37 H 0.375 0.625 38 H 0.253 0.747 39 H 0.112 0.888 40 H 0.124 0.876 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.158 0.842 44 H 0.167 0.833 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.116 0.884 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.990 -12.107 28.890 35.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.339 5.339 4 C -0.001 4.001 5 C 0.022 3.978 6 N -0.386 5.386 7 C -0.384 4.384 8 H 0.091 0.909 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.806 3.194 12 H -0.208 1.208 13 H -0.219 1.219 14 H -0.198 1.198 15 C 0.293 3.707 16 O -0.468 6.468 17 C -0.161 4.161 18 C -0.096 4.096 19 C -0.088 4.088 20 C -0.094 4.094 21 C -0.191 4.191 22 C 0.035 3.965 23 O -0.252 6.252 24 C -0.078 4.078 25 C 0.020 3.980 26 F -0.129 7.129 27 C -0.133 4.133 28 H 0.064 0.936 29 H 0.108 0.892 30 H 0.083 0.917 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.017 0.983 36 H 0.046 0.954 37 H 0.207 0.793 38 H 0.062 0.938 39 H 0.131 0.869 40 H 0.142 0.858 41 H 0.099 0.901 42 H 0.084 0.916 43 H 0.176 0.824 44 H 0.184 0.816 45 H 0.089 0.911 46 H 0.091 0.909 47 H 0.134 0.866 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -15.456 -11.740 29.036 34.926 hybrid contribution 0.959 0.393 -0.837 1.332 sum -14.497 -11.347 28.199 33.676 Atomic orbital electron populations 1.22176 0.94315 1.03599 1.02286 1.21919 0.95630 0.80266 1.04829 1.48082 1.65280 1.15644 1.04878 1.21264 0.95560 0.97606 0.85667 1.20952 0.95080 0.95058 0.86743 1.42398 1.12025 1.61106 1.23107 1.19594 0.90348 1.25771 1.02663 0.90947 1.25627 1.01766 1.00344 0.98813 1.69819 1.33627 1.38392 1.19867 0.85079 0.79217 0.76858 0.78205 1.20769 1.21881 1.19764 1.21505 0.76123 0.86341 0.86716 1.90721 1.47438 1.20509 1.88083 1.21742 1.06097 0.99570 0.88683 1.20211 1.03056 0.97256 0.89063 1.19588 0.93521 0.98708 0.96960 1.21253 0.96691 0.97454 0.94029 1.21430 0.99434 1.00381 0.97846 1.19225 0.93450 0.96003 0.87818 1.86107 1.36142 1.68756 1.34169 1.23432 0.80818 1.03672 0.99841 1.17295 0.84385 1.00967 0.95384 1.91450 1.60408 1.76952 1.84107 1.21042 1.01547 0.97464 0.93295 0.93561 0.89200 0.91675 0.90164 0.87617 0.89192 0.92311 0.98284 0.95371 0.79270 0.93782 0.86948 0.85757 0.90062 0.91608 0.82392 0.81592 0.91125 0.90872 0.86569 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 71.98 0.74 -1.38 16 2 C 0.10 1.57 5.93 86.38 0.51 2.09 16 3 N -0.61 -15.81 2.47 -821.82 -2.03 -17.84 16 4 C 0.12 4.26 5.52 86.38 0.48 4.74 16 5 C 0.15 6.47 6.58 86.38 0.57 7.04 16 6 N -0.74 -40.01 5.60 -343.46 -1.92 -41.93 16 7 C -0.25 -14.77 9.99 84.03 0.84 -13.93 16 8 H 0.07 4.11 7.83 -2.91 -0.02 4.08 16 9 C -0.07 -4.32 5.50 84.86 0.47 -3.85 16 10 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 11 Si 0.98 47.23 29.55 68.60 2.03 49.26 16 12 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 13 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 14 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 15 C 0.50 13.68 7.67 87.66 0.67 14.35 16 16 O -0.59 -22.23 15.56 -3.04 -0.05 -22.27 16 17 C -0.12 -1.95 4.23 29.85 0.13 -1.82 16 18 C -0.06 -1.01 4.63 29.85 0.14 -0.87 16 19 C -0.09 -1.29 5.13 -19.85 -0.10 -1.39 16 20 C -0.08 -0.85 9.69 22.26 0.22 -0.63 16 21 C -0.17 -1.92 9.04 22.36 0.20 -1.71 16 22 C 0.08 1.39 6.69 22.53 0.15 1.54 16 23 O -0.34 -5.71 10.36 -92.97 -0.96 -6.67 16 24 C 0.02 0.11 9.81 113.37 1.11 1.22 16 25 C 0.04 0.80 7.31 22.45 0.16 0.96 16 26 F -0.15 -3.66 17.11 44.97 0.77 -2.89 16 27 C -0.11 -2.00 9.67 22.29 0.22 -1.78 16 28 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.06 0.72 7.22 -2.39 -0.02 0.70 16 31 H 0.08 1.42 8.07 -2.39 -0.02 1.40 16 32 H 0.11 1.18 6.44 -2.39 -0.02 1.16 16 33 H 0.09 2.83 8.07 -2.39 -0.02 2.81 16 34 H 0.06 2.34 7.42 -2.39 -0.02 2.32 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.38 21.13 7.67 -92.71 -0.71 20.42 16 38 H 0.25 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.11 1.45 7.40 -2.39 -0.02 1.43 16 40 H 0.12 1.26 7.19 -2.38 -0.02 1.25 16 41 H 0.08 1.47 8.04 -2.39 -0.02 1.46 16 42 H 0.07 1.40 8.04 -2.39 -0.02 1.38 16 43 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 44 H 0.17 0.81 6.30 -2.91 -0.02 0.79 16 45 H 0.07 0.27 7.67 -2.39 -0.02 0.26 16 46 H 0.07 0.25 7.65 -2.39 -0.02 0.23 16 47 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 48 H 0.15 2.35 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -80.09 402.85 4.87 -75.23 By element: Atomic # 1 Polarization: 22.41 SS G_CDS: 0.26 Total: 22.67 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 6.50 Total: 4.55 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -3.67 Total: -119.87 kcal Atomic # 8 Polarization: -27.94 SS G_CDS: -1.01 Total: -28.95 kcal Atomic # 9 Polarization: -3.66 SS G_CDS: 0.77 Total: -2.89 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.26 kcal Total: -80.09 4.87 -75.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699192198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.738 kcal (2) G-P(sol) polarization free energy of solvation -80.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds