Wall clock time and date at job start Tue Mar 31 2020 20:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35962 * 116.99990 * 2 1 4 4 C 1.38660 * 120.06330 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97143 * 179.70348 * 4 3 2 6 6 C 1.38263 * 120.09127 * 0.54199 * 5 4 3 7 7 C 1.50697 * 119.93372 * 179.72272 * 6 5 4 8 8 C 1.52996 * 109.47491 * 269.73079 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09007 * 109.47463 * 325.00619 * 12 11 9 14 14 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 15 15 C 1.52995 * 109.47455 * 205.00257 * 12 11 9 16 16 H 1.09003 * 109.47461 * 65.00148 * 15 12 11 17 17 C 1.52997 * 109.47095 * 305.00045 * 15 12 11 18 18 N 1.46507 * 109.47277 * 184.99886 * 15 12 11 19 19 C 1.36930 * 119.99971 * 204.99701 * 18 15 12 20 20 H 1.07999 * 120.00261 * 0.02562 * 19 18 15 21 21 C 1.38813 * 119.99900 * 180.02562 * 19 18 15 22 22 N 1.31623 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46799 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47302 * 119.99758 * 23 21 19 26 26 H 1.48502 * 109.47272 * 240.00170 * 23 21 19 27 27 C 1.38259 * 120.12762 * 359.46000 * 6 5 4 28 28 C 1.38335 * 120.02774 * 0.26452 * 27 6 5 29 29 F 1.35097 * 120.04525 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.47507 * 59.99619 * 1 2 3 31 31 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47074 * 299.99967 * 1 2 3 33 33 H 1.08003 * 120.01334 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.95450 * 180.29644 * 5 4 3 35 35 H 1.09004 * 109.46801 * 149.73118 * 7 6 5 36 36 H 1.09000 * 109.47461 * 29.73650 * 7 6 5 37 37 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 38 38 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 40 40 H 1.08998 * 109.47598 * 180.02562 * 14 12 11 41 41 H 1.09005 * 109.47473 * 300.00173 * 14 12 11 42 42 H 1.08998 * 109.46925 * 59.99877 * 14 12 11 43 43 H 1.09005 * 109.47027 * 179.97438 * 17 15 12 44 44 H 1.08994 * 109.47452 * 299.99660 * 17 15 12 45 45 H 1.09000 * 109.47135 * 59.99891 * 17 15 12 46 46 H 0.96999 * 119.99652 * 25.00734 * 18 15 12 47 47 H 0.96998 * 119.99970 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.98423 * 180.25109 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3752 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0011 7 6 3.9848 5.0213 0.0015 8 6 4.2158 5.4765 -1.4407 9 6 4.8979 6.8204 -1.4402 10 8 5.1726 7.3606 -0.3896 11 7 5.2080 7.4192 -2.6071 12 6 5.8764 8.7228 -2.6066 13 1 5.5159 9.3157 -1.7660 14 6 7.3875 8.5210 -2.4774 15 6 5.5696 9.4538 -3.9152 16 1 4.5038 9.6763 -3.9658 17 6 5.9623 8.5673 -5.0987 18 7 6.3324 10.7036 -3.9668 19 6 5.8835 11.7485 -4.7294 20 1 4.9670 11.6516 -5.2925 21 6 6.6065 12.9325 -4.7788 22 7 7.7237 13.0505 -4.0930 23 14 5.9939 14.3584 -5.8186 24 1 4.7247 13.9740 -6.4870 25 1 5.7584 15.5394 -4.9496 26 1 7.0118 14.6949 -6.8461 27 6 4.0579 2.5199 0.0005 28 6 3.4333 1.2856 0.0000 29 9 4.1713 0.1540 -0.0011 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2137 2.3201 0.0005 34 1 1.3341 4.5115 0.0120 35 1 4.9429 4.9418 0.5153 36 1 3.3561 5.7481 0.5157 37 1 3.2578 5.5560 -1.9545 38 1 4.8447 4.7498 -1.9549 39 1 4.9885 6.9870 -3.4474 40 1 7.8849 9.4909 -2.4765 41 1 7.6062 8.0002 -1.5451 42 1 7.7481 7.9281 -3.3179 43 1 5.7433 9.0880 -6.0310 44 1 7.0281 8.3449 -5.0482 45 1 5.3948 7.6375 -5.0603 46 1 7.1554 10.7907 -3.4609 47 1 8.2287 13.8780 -4.1272 48 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700407686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:39 Heat of formation + Delta-G solvation = -92.691830 kcal Electronic energy + Delta-G solvation = -28258.142254 eV Core-core repulsion = 24035.011749 eV Total energy + Delta-G solvation = -4223.130505 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.08409 -40.51871 -39.77249 -38.24944 -36.94678 -33.91477 -33.73788 -31.82198 -31.14736 -30.06304 -29.06541 -28.21851 -27.73272 -24.97772 -24.30586 -23.19249 -23.00203 -21.50426 -20.18687 -19.17646 -18.73510 -17.59691 -17.37879 -17.28390 -16.71280 -16.54860 -15.65418 -15.44104 -15.36709 -15.23213 -14.71568 -14.64635 -14.58500 -14.18914 -14.02539 -13.55458 -13.43126 -13.04045 -12.96340 -12.77017 -12.57451 -12.37914 -12.33049 -11.94247 -11.83922 -11.64213 -11.55162 -11.34614 -11.28851 -11.20548 -10.95918 -10.85228 -10.47754 -10.25093 -9.97441 -9.80230 -9.59851 -9.33678 -8.96430 -8.78824 -8.50281 -7.01985 -5.80215 -3.09700 0.71765 0.80169 2.68197 2.78203 3.07833 3.37512 3.41700 3.47447 3.49214 3.82837 4.24185 4.32786 4.51275 4.57430 4.64893 4.71874 4.76841 4.83607 4.91885 4.97919 5.03599 5.11175 5.32899 5.42090 5.46801 5.48876 5.54131 5.62159 5.64243 5.67230 5.76460 5.82666 5.91557 6.06390 6.15080 6.17084 6.23059 6.28762 6.39333 6.47557 6.62975 6.70707 6.82180 6.92386 7.06181 7.67218 7.70456 8.37411 8.40837 9.49646 10.05233 10.39963 11.42420 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.001683 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.647255 B =16637.321213 C =16983.240130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.312 6.312 3 C 0.088 3.912 4 C -0.179 4.179 5 C -0.084 4.084 6 C -0.086 4.086 7 C -0.062 4.062 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.543 6.543 11 N -0.720 5.720 12 C 0.135 3.865 13 H 0.087 0.913 14 C -0.159 4.159 15 C 0.168 3.832 16 H 0.051 0.949 17 C -0.168 4.168 18 N -0.720 5.720 19 C -0.240 4.240 20 H 0.071 0.929 21 C -0.012 4.012 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.112 4.112 28 C 0.071 3.929 29 F -0.133 7.133 30 H 0.058 0.942 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.397 0.603 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.055 0.945 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.032 0.968 46 H 0.386 0.614 47 H 0.255 0.745 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -26.474 7.529 30.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.225 6.225 3 C 0.042 3.958 4 C -0.198 4.198 5 C -0.103 4.103 6 C -0.087 4.087 7 C -0.100 4.100 8 C -0.177 4.177 9 C 0.294 3.706 10 O -0.421 6.421 11 N -0.373 5.373 12 C 0.031 3.969 13 H 0.105 0.895 14 C -0.217 4.217 15 C 0.057 3.943 16 H 0.069 0.931 17 C -0.228 4.228 18 N -0.363 5.363 19 C -0.372 4.372 20 H 0.089 0.911 21 C -0.208 4.208 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.131 4.131 28 C 0.051 3.949 29 F -0.112 7.112 30 H 0.077 0.923 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.102 0.898 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.233 0.767 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.222 0.778 47 H 0.065 0.935 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -13.508 -26.174 8.174 30.567 hybrid contribution -0.245 0.519 -0.959 1.117 sum -13.753 -25.655 7.216 29.990 Atomic orbital electron populations 1.23122 0.77858 1.04319 1.01568 1.86136 1.21774 1.25853 1.88776 1.19022 0.90844 0.85677 1.00237 1.21145 1.00319 0.91427 1.06894 1.20981 0.93981 0.97392 0.97900 1.19713 0.93331 0.94873 1.00772 1.20302 1.01765 0.92048 0.95854 1.21676 1.02216 0.94998 0.98784 1.20598 0.78879 0.87037 0.84044 1.90711 1.54107 1.65975 1.31274 1.46291 1.60749 1.21940 1.08310 1.21317 0.92544 0.82790 1.00293 0.89480 1.22134 0.95733 1.02850 1.00984 1.20363 0.96069 0.87406 0.90467 0.93128 1.22534 1.00912 0.98126 1.01274 1.42461 1.27373 1.09734 1.56743 1.19268 1.05560 0.91802 1.20525 0.91080 1.24749 0.97384 0.98138 1.00575 1.69668 1.16397 1.26700 1.45156 0.86116 0.77765 0.82700 0.79566 1.20579 1.21844 1.21881 1.20972 1.01213 0.89659 1.01230 1.16963 0.85928 0.83009 1.09008 1.91504 1.76393 1.49026 1.94267 0.92346 0.87941 0.92396 0.84451 0.84755 0.89787 0.89650 0.88811 0.88838 0.76687 0.90575 0.93144 0.92591 0.92432 0.92816 0.94870 0.77779 0.93481 0.83839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.79 10.36 -19.62 -0.20 -2.99 16 3 C 0.09 0.80 6.69 -39.18 -0.26 0.54 16 4 C -0.18 -1.26 9.04 -39.45 -0.36 -1.61 16 5 C -0.08 -0.59 9.69 -39.59 -0.38 -0.98 16 6 C -0.09 -0.69 5.13 -104.61 -0.54 -1.22 16 7 C -0.06 -0.53 4.63 -27.89 -0.13 -0.66 16 8 C -0.14 -1.16 5.68 -27.88 -0.16 -1.32 16 9 C 0.51 6.59 7.79 -10.98 -0.09 6.50 16 10 O -0.54 -9.27 15.65 5.55 0.09 -9.18 16 11 N -0.72 -9.33 4.99 -53.81 -0.27 -9.60 16 12 C 0.14 2.27 2.62 -67.93 -0.18 2.09 16 13 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 14 C -0.16 -2.65 9.00 37.16 0.33 -2.31 16 15 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 16 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 17 C -0.17 -2.74 9.01 37.16 0.33 -2.41 16 18 N -0.72 -17.40 5.03 -53.43 -0.27 -17.67 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -27.73 13.06 55.49 0.72 -27.00 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 C -0.11 -0.95 9.67 -39.54 -0.38 -1.34 16 28 C 0.07 0.70 7.31 -39.30 -0.29 0.42 16 29 F -0.13 -1.52 17.11 2.25 0.04 -1.48 16 30 H 0.06 0.19 7.66 -51.93 -0.40 -0.20 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.19 7.66 -51.93 -0.40 -0.21 16 33 H 0.14 0.63 6.30 -52.48 -0.33 0.30 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.08 0.79 8.04 -51.93 -0.42 0.37 16 36 H 0.08 0.78 8.04 -51.93 -0.42 0.36 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.40 4.15 6.58 -40.82 -0.27 3.88 16 40 H 0.08 1.43 6.29 -51.93 -0.33 1.10 16 41 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.06 0.86 6.56 -51.93 -0.34 0.52 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.89 6.56 -51.93 -0.34 0.55 16 45 H 0.03 0.41 6.29 -51.93 -0.33 0.08 16 46 H 0.39 9.91 5.77 -40.82 -0.24 9.68 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 48 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 LS Contribution 395.91 15.07 5.97 5.97 Total: -1.00 -33.33 395.91 -7.61 -40.94 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -7.12 Total: 9.29 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -1.54 Total: -5.33 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 0.19 Total: -54.28 kcal Atomic # 8 Polarization: -12.06 SS G_CDS: -0.12 Total: -12.18 kcal Atomic # 9 Polarization: -1.52 SS G_CDS: 0.04 Total: -1.48 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.33 -7.61 -40.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700407686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.750 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds