Wall clock time and date at job start Tue Mar 31 2020 20:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35962 * 116.99990 * 2 1 4 4 C 1.38660 * 120.06330 * 0.02562 * 3 2 1 5 5 C 1.38179 * 119.97143 * 179.70348 * 4 3 2 6 6 C 1.38263 * 120.09127 * 0.54199 * 5 4 3 7 7 C 1.50697 * 119.93372 * 179.72272 * 6 5 4 8 8 C 1.52996 * 109.47491 * 269.73079 * 7 6 5 9 9 C 1.50702 * 109.47159 * 179.97438 * 8 7 6 10 10 O 1.21283 * 120.00262 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99928 * 179.72352 * 9 8 7 12 12 C 1.46499 * 120.00199 * 180.27479 * 11 9 8 13 13 H 1.09007 * 109.47463 * 325.00619 * 12 11 9 14 14 C 1.53000 * 109.47070 * 85.00207 * 12 11 9 15 15 C 1.52995 * 109.47455 * 205.00257 * 12 11 9 16 16 H 1.09003 * 109.47461 * 65.00148 * 15 12 11 17 17 C 1.52997 * 109.47095 * 305.00045 * 15 12 11 18 18 N 1.46507 * 109.47277 * 184.99886 * 15 12 11 19 19 C 1.36930 * 119.99971 * 204.99701 * 18 15 12 20 20 H 1.07999 * 120.00261 * 0.02562 * 19 18 15 21 21 C 1.38813 * 119.99900 * 180.02562 * 19 18 15 22 22 N 1.31623 * 120.00037 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00199 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.46799 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47302 * 119.99758 * 23 21 19 26 26 H 1.48502 * 109.47272 * 240.00170 * 23 21 19 27 27 C 1.38259 * 120.12762 * 359.46000 * 6 5 4 28 28 C 1.38335 * 120.02774 * 0.26452 * 27 6 5 29 29 F 1.35097 * 120.04525 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.47507 * 59.99619 * 1 2 3 31 31 H 1.09001 * 109.47266 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47074 * 299.99967 * 1 2 3 33 33 H 1.08003 * 120.01334 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.95450 * 180.29644 * 5 4 3 35 35 H 1.09004 * 109.46801 * 149.73118 * 7 6 5 36 36 H 1.09000 * 109.47461 * 29.73650 * 7 6 5 37 37 H 1.09004 * 109.47066 * 60.00201 * 8 7 6 38 38 H 1.08994 * 109.47405 * 300.00031 * 8 7 6 39 39 H 0.97000 * 120.00317 * 0.28382 * 11 9 8 40 40 H 1.08998 * 109.47598 * 180.02562 * 14 12 11 41 41 H 1.09005 * 109.47473 * 300.00173 * 14 12 11 42 42 H 1.08998 * 109.46925 * 59.99877 * 14 12 11 43 43 H 1.09005 * 109.47027 * 179.97438 * 17 15 12 44 44 H 1.08994 * 109.47452 * 299.99660 * 17 15 12 45 45 H 1.09000 * 109.47135 * 59.99891 * 17 15 12 46 46 H 0.96999 * 119.99652 * 25.00734 * 18 15 12 47 47 H 0.96998 * 119.99970 * 180.02562 * 22 21 19 48 48 H 1.07998 * 119.98423 * 180.25109 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2923 2.3752 0.0005 5 6 1.9216 3.6053 0.0067 6 6 3.3023 3.6777 0.0011 7 6 3.9848 5.0213 0.0015 8 6 4.2158 5.4765 -1.4407 9 6 4.8979 6.8204 -1.4402 10 8 5.1726 7.3606 -0.3896 11 7 5.2080 7.4192 -2.6071 12 6 5.8764 8.7228 -2.6066 13 1 5.5159 9.3157 -1.7660 14 6 7.3875 8.5210 -2.4774 15 6 5.5696 9.4538 -3.9152 16 1 4.5038 9.6763 -3.9658 17 6 5.9623 8.5673 -5.0987 18 7 6.3324 10.7036 -3.9668 19 6 5.8835 11.7485 -4.7294 20 1 4.9670 11.6516 -5.2925 21 6 6.6065 12.9325 -4.7788 22 7 7.7237 13.0505 -4.0930 23 14 5.9939 14.3584 -5.8186 24 1 4.7247 13.9740 -6.4870 25 1 5.7584 15.5394 -4.9496 26 1 7.0118 14.6949 -6.8461 27 6 4.0579 2.5199 0.0005 28 6 3.4333 1.2856 0.0000 29 9 4.1713 0.1540 -0.0011 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2137 2.3201 0.0005 34 1 1.3341 4.5115 0.0120 35 1 4.9429 4.9418 0.5153 36 1 3.3561 5.7481 0.5157 37 1 3.2578 5.5560 -1.9545 38 1 4.8447 4.7498 -1.9549 39 1 4.9885 6.9870 -3.4474 40 1 7.8849 9.4909 -2.4765 41 1 7.6062 8.0002 -1.5451 42 1 7.7481 7.9281 -3.3179 43 1 5.7433 9.0880 -6.0310 44 1 7.0281 8.3449 -5.0482 45 1 5.3948 7.6375 -5.0603 46 1 7.1554 10.7907 -3.4609 47 1 8.2287 13.8780 -4.1272 48 1 5.1363 2.5791 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700407686.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:38 Heat of formation + Delta-G solvation = -114.124197 kcal Electronic energy + Delta-G solvation = -28259.071631 eV Core-core repulsion = 24035.011749 eV Total energy + Delta-G solvation = -4224.059882 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.83453 -41.17119 -40.80988 -38.92268 -38.32107 -35.56034 -34.48189 -33.49007 -31.72233 -31.26449 -30.08112 -29.75640 -28.21399 -26.17047 -25.77664 -24.42208 -23.76624 -22.24576 -21.22414 -20.60442 -19.44214 -19.29119 -18.29165 -17.96609 -17.57533 -17.14861 -16.83986 -16.64875 -16.32074 -16.04487 -15.87861 -15.78230 -15.47496 -15.19467 -15.08360 -14.98704 -14.48861 -14.29131 -13.92475 -13.73017 -13.59774 -13.33394 -13.06603 -13.05061 -12.97057 -12.86233 -12.81477 -12.63680 -12.39506 -12.11518 -12.06618 -11.98703 -11.86532 -11.84815 -11.65194 -11.55504 -10.95306 -10.79830 -10.01337 -9.93208 -9.11861 -9.01630 -7.92936 -5.21481 0.12720 0.20149 1.48754 1.49332 1.59054 1.75709 2.20412 2.23574 2.54963 2.61063 3.21631 3.41265 3.62673 3.74932 3.89481 3.96831 4.01026 4.07737 4.11485 4.22418 4.31805 4.34908 4.36969 4.39722 4.40025 4.53918 4.63334 4.71901 4.73545 4.77291 4.88608 4.91043 4.93543 4.99699 5.08633 5.11256 5.19510 5.22697 5.25313 5.29839 5.52540 5.56624 5.62971 5.66238 5.67870 6.29494 6.29810 6.67839 7.35860 7.38365 8.11168 8.33548 9.30867 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.026644 B = 0.001683 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.647255 B =16637.321213 C =16983.240130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.338 6.338 3 C 0.079 3.921 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.088 4.088 7 C -0.057 4.057 8 C -0.125 4.125 9 C 0.507 3.493 10 O -0.588 6.588 11 N -0.709 5.709 12 C 0.149 3.851 13 H 0.055 0.945 14 C -0.150 4.150 15 C 0.165 3.835 16 H 0.048 0.952 17 C -0.158 4.158 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.970 5.970 23 Si 0.971 3.029 24 H -0.264 1.264 25 H -0.297 1.297 26 H -0.295 1.295 27 C -0.113 4.113 28 C 0.039 3.961 29 F -0.150 7.150 30 H 0.071 0.929 31 H 0.116 0.884 32 H 0.070 0.930 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.121 0.879 38 H 0.116 0.884 39 H 0.414 0.586 40 H 0.048 0.952 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.079 0.921 46 H 0.375 0.625 47 H 0.250 0.750 48 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.172 -27.958 6.423 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.252 6.252 3 C 0.033 3.967 4 C -0.193 4.193 5 C -0.097 4.097 6 C -0.088 4.088 7 C -0.095 4.095 8 C -0.164 4.164 9 C 0.295 3.705 10 O -0.468 6.468 11 N -0.363 5.363 12 C 0.043 3.957 13 H 0.073 0.927 14 C -0.208 4.208 15 C 0.056 3.944 16 H 0.066 0.934 17 C -0.218 4.218 18 N -0.377 5.377 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.269 4.269 22 N -0.621 5.621 23 Si 0.801 3.199 24 H -0.188 1.188 25 H -0.225 1.225 26 H -0.222 1.222 27 C -0.131 4.131 28 C 0.019 3.981 29 F -0.129 7.129 30 H 0.090 0.910 31 H 0.135 0.865 32 H 0.089 0.911 33 H 0.182 0.818 34 H 0.174 0.826 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.139 0.861 38 H 0.134 0.866 39 H 0.253 0.747 40 H 0.067 0.933 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.210 0.790 47 H 0.059 0.941 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.010 -27.727 7.033 32.780 hybrid contribution 0.414 0.876 -0.554 1.117 sum -15.596 -26.851 6.479 31.720 Atomic orbital electron populations 1.23422 0.75720 1.05802 1.02796 1.86106 1.24110 1.26195 1.88775 1.19244 0.90762 0.86515 1.00156 1.21423 1.01550 0.90549 1.05768 1.21270 0.93706 0.98276 0.96421 1.19631 0.93779 0.94017 1.01394 1.20201 1.01158 0.92251 0.95839 1.21691 1.03322 0.92169 0.99255 1.21413 0.77978 0.88116 0.82968 1.90705 1.55847 1.67406 1.32871 1.46079 1.60354 1.20401 1.09483 1.20826 0.92727 0.84233 0.97881 0.92703 1.22025 0.95523 1.01549 1.01701 1.20553 0.95142 0.86207 0.92535 0.93432 1.22357 1.01418 0.99281 0.98699 1.42680 1.27526 1.11213 1.56311 1.19662 1.05163 0.92376 1.19557 0.90354 1.25541 0.97985 1.00869 1.02542 1.69826 1.17920 1.27021 1.47349 0.85098 0.77661 0.79352 0.77791 1.18847 1.22459 1.22233 1.21061 1.01701 0.89450 1.00930 1.17310 0.86667 0.82984 1.11102 1.91450 1.76869 1.49928 1.94638 0.91002 0.86545 0.91146 0.81829 0.82575 0.91031 0.90217 0.86082 0.86595 0.74744 0.93291 0.93055 0.90946 0.93984 0.93149 0.90235 0.79048 0.94147 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.22 16 2 O -0.34 -5.70 10.36 -93.13 -0.97 -6.66 16 3 C 0.08 1.34 6.69 22.53 0.15 1.49 16 4 C -0.17 -1.97 9.04 22.36 0.20 -1.77 16 5 C -0.08 -0.87 9.69 22.26 0.22 -0.65 16 6 C -0.09 -1.20 5.13 -19.85 -0.10 -1.30 16 7 C -0.06 -0.86 4.63 29.85 0.14 -0.72 16 8 C -0.12 -1.71 5.68 29.85 0.17 -1.54 16 9 C 0.51 12.15 7.79 87.66 0.68 12.83 16 10 O -0.59 -19.83 15.65 -3.04 -0.05 -19.88 16 11 N -0.71 -16.71 4.99 -442.53 -2.21 -18.92 16 12 C 0.15 4.93 2.62 44.99 0.12 5.04 16 13 H 0.05 2.18 7.58 -2.38 -0.02 2.16 16 14 C -0.15 -4.97 9.00 71.98 0.65 -4.33 16 15 C 0.16 6.03 2.93 44.99 0.13 6.16 16 16 H 0.05 1.78 8.08 -2.39 -0.02 1.76 16 17 C -0.16 -4.75 9.01 71.98 0.65 -4.10 16 18 N -0.73 -35.85 5.03 -322.94 -1.63 -37.47 16 19 C -0.24 -12.75 9.93 84.03 0.83 -11.91 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 21 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 22 N -0.97 -59.19 13.06 21.65 0.28 -58.91 16 23 Si 0.97 45.72 29.55 68.60 2.03 47.75 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 C -0.11 -1.80 9.67 22.30 0.22 -1.58 16 28 C 0.04 0.76 7.31 22.45 0.16 0.92 16 29 F -0.15 -3.50 17.11 44.97 0.77 -2.73 16 30 H 0.07 0.28 7.66 -2.39 -0.02 0.27 16 31 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.29 7.66 -2.39 -0.02 0.27 16 33 H 0.16 0.89 6.30 -2.91 -0.02 0.87 16 34 H 0.16 1.03 8.06 -2.91 -0.02 1.01 16 35 H 0.07 1.27 8.04 -2.38 -0.02 1.25 16 36 H 0.08 1.32 8.04 -2.39 -0.02 1.30 16 37 H 0.12 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.41 6.98 6.58 -92.71 -0.61 6.37 16 40 H 0.05 1.90 6.29 -2.39 -0.02 1.88 16 41 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.07 2.14 6.56 -2.39 -0.02 2.12 16 43 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 44 H 0.05 1.56 6.56 -2.39 -0.02 1.54 16 45 H 0.08 1.64 6.29 -2.39 -0.02 1.62 16 46 H 0.38 19.84 5.77 -92.71 -0.54 19.30 16 47 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 48 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -74.88 395.91 3.88 -71.01 By element: Atomic # 1 Polarization: 30.13 SS G_CDS: -0.15 Total: 29.97 kcal Atomic # 6 Polarization: -9.95 SS G_CDS: 5.80 Total: -4.16 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -3.55 Total: -115.30 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -1.01 Total: -26.54 kcal Atomic # 9 Polarization: -3.50 SS G_CDS: 0.77 Total: -2.73 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -74.88 3.88 -71.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700407686.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.118 kcal (2) G-P(sol) polarization free energy of solvation -74.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds