Wall clock time and date at job start Tue Mar 31 2020 22:07:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30380 * 125.96460 * 2 1
4 4 N 1.39918 * 109.01834 * 180.27849 * 3 2 1
5 5 C 1.46501 * 125.74112 * 179.70753 * 4 3 2
6 6 C 1.34415 * 108.51731 * 359.71490 * 4 3 2
7 7 F 1.35091 * 126.34773 * 180.02562 * 6 4 3
8 8 C 1.38506 * 107.30824 * 359.97438 * 6 4 3
9 9 C 1.47177 * 126.45618 * 180.02562 * 8 6 4
10 10 O 1.21627 * 119.99957 * 90.02370 * 9 8 6
11 11 N 1.34775 * 119.99516 * 270.02187 * 9 8 6
12 12 C 1.46928 * 120.63597 * 4.99579 * 11 9 8
13 13 C 1.53182 * 108.78037 * 126.40985 * 12 11 9
14 14 C 1.53036 * 109.31585 * 54.63364 * 13 12 11
15 15 C 1.53045 * 109.53623 * 298.63827 * 14 13 12
16 16 C 1.46924 * 120.63019 * 185.00843 * 11 9 8
17 17 H 1.09004 * 109.58665 * 113.65883 * 16 11 9
18 18 C 1.53003 * 109.58648 * 353.38120 * 16 11 9
19 19 N 1.46497 * 109.47189 * 178.87086 * 18 16 11
20 20 C 1.46504 * 119.99970 * 96.71236 * 19 18 16
21 21 C 1.36930 * 120.00027 * 276.71099 * 19 18 16
22 22 H 1.08004 * 120.00213 * 30.13839 * 21 19 18
23 23 C 1.38815 * 120.00131 * 210.14175 * 21 19 18
24 24 N 1.31623 * 120.00154 * 7.45918 * 23 21 19
25 25 Si 1.86805 * 120.00089 * 187.45930 * 23 21 19
26 26 H 1.48505 * 109.46981 * 0.02562 * 25 23 21
27 27 H 1.48497 * 109.46881 * 120.00025 * 25 23 21
28 28 H 1.48493 * 109.47428 * 239.99962 * 25 23 21
29 29 H 1.08995 * 109.47231 * 270.19733 * 1 2 3
30 30 H 1.09000 * 109.47011 * 30.19939 * 1 2 3
31 31 H 1.08997 * 109.46735 * 150.19134 * 1 2 3
32 32 H 1.08995 * 109.47156 * 270.00244 * 5 4 3
33 33 H 1.09000 * 109.46868 * 30.00553 * 5 4 3
34 34 H 1.09006 * 109.46859 * 149.99757 * 5 4 3
35 35 H 1.08997 * 109.58498 * 246.19970 * 12 11 9
36 36 H 1.09001 * 109.58246 * 6.61523 * 12 11 9
37 37 H 1.08997 * 109.49995 * 174.59294 * 13 12 11
38 38 H 1.09004 * 109.49590 * 294.67953 * 13 12 11
39 39 H 1.09000 * 109.45787 * 58.65539 * 14 13 12
40 40 H 1.08999 * 109.46214 * 178.62943 * 14 13 12
41 41 H 1.09002 * 109.49546 * 301.40447 * 15 14 13
42 42 H 1.09007 * 109.49566 * 181.31264 * 15 14 13
43 43 H 1.09002 * 109.46959 * 298.87195 * 18 16 11
44 44 H 1.08997 * 109.47343 * 58.86842 * 18 16 11
45 45 H 1.09010 * 109.47035 * 85.74455 * 20 19 18
46 46 H 1.08998 * 109.46952 * 205.73991 * 20 19 18
47 47 H 1.08993 * 109.47340 * 325.74618 * 20 19 18
48 48 H 0.96999 * 119.99971 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2727 1.0553 0.0000
4 7 3.6112 0.6475 -0.0064
5 6 4.7763 1.5355 -0.0145
6 6 3.6480 -0.6962 -0.0041
7 9 4.7576 -1.4667 -0.0081
8 6 2.3375 -1.1444 0.0044
9 6 1.8931 -2.5474 0.0102
10 8 1.7150 -3.1246 1.0660
11 7 1.6834 -3.1926 -1.1543
12 6 1.9979 -2.5460 -2.4357
13 6 2.9208 -3.4672 -3.2395
14 6 2.2685 -4.8450 -3.3742
15 6 2.0684 -5.4546 -1.9848
16 6 1.1357 -4.5559 -1.1668
17 1 0.1439 -4.5471 -1.6189
18 6 1.0414 -5.0838 0.2662
19 7 0.4700 -6.4327 0.2530
20 6 1.3518 -7.6021 0.2902
21 6 -0.8881 -6.6005 0.2060
22 1 -1.5062 -5.8664 -0.2895
23 6 -1.4707 -7.7142 0.7952
24 7 -0.7400 -8.5314 1.5237
25 14 -3.2919 -8.0532 0.5544
26 1 -3.8839 -6.9929 -0.3004
27 1 -3.4670 -9.3733 -0.1026
28 1 -3.9724 -8.0630 1.8742
29 1 -0.3633 0.0035 1.0276
30 1 -0.3633 0.8882 -0.5169
31 1 -0.3633 -0.8917 -0.5109
32 1 5.0597 1.7537 -1.0442
33 1 4.5286 2.4646 0.4988
34 1 5.6075 1.0489 0.4958
35 1 1.0775 -2.3737 -2.9935
36 1 2.4995 -1.5959 -2.2520
37 1 3.0845 -3.0436 -4.2304
38 1 3.8758 -3.5657 -2.7233
39 1 1.3023 -4.7425 -3.8684
40 1 2.9122 -5.4952 -3.9666
41 1 3.0314 -5.5345 -1.4805
42 1 1.6251 -6.4456 -2.0827
43 1 2.0374 -5.1154 0.7081
44 1 0.4035 -4.4248 0.8550
45 1 1.5951 -7.8409 1.3257
46 1 0.8476 -8.4520 -0.1697
47 1 2.2685 -7.3836 -0.2573
48 1 -1.1470 -9.3098 1.9351
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001707277922.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:57
Heat of formation + Delta-G solvation = 42.668696 kcal
Electronic energy + Delta-G solvation = -31354.294945 eV
Core-core repulsion = 27169.326864 eV
Total energy + Delta-G solvation = -4184.968081 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-49.46014 -41.59609 -39.87295 -37.03115 -35.36655 -34.38929 -32.60910 -32.01813
-30.53865 -29.97149 -29.53807 -26.89463 -26.06657 -25.52950 -24.34810 -22.89694
-22.00114 -21.00818 -20.48404 -20.27055 -19.02509 -17.67820 -17.12624 -16.73356
-16.23770 -16.16765 -15.59853 -14.91866 -14.87181 -14.69364 -14.32168 -14.20584
-13.92484 -13.82186 -13.62709 -13.55687 -13.23554 -13.03576 -12.89425 -12.63306
-12.56659 -12.54394 -12.33368 -12.22210 -11.44055 -11.22862 -11.07896 -10.85617
-10.83093 -10.67174 -10.63732 -10.36150 -10.30532 -9.97918 -9.87358 -9.68702
-9.54441 -9.04336 -8.63939 -8.39140 -8.11834 -6.44974 -5.60858 -3.10265
1.18099 1.70001 2.11691 2.76987 3.31005 3.44607 3.51605 3.53588
3.65011 4.11019 4.54047 4.61617 4.68520 4.79682 4.86754 4.88590
4.96587 4.98962 5.11961 5.17845 5.42728 5.49869 5.53638 5.55164
5.59143 5.59958 5.68983 5.76666 5.94316 6.00102 6.03942 6.15060
6.18602 6.22517 6.42926 6.47504 6.52178 6.68635 6.87923 7.01153
7.08270 7.16915 7.39182 7.56893 7.74022 7.85584 7.93281 8.48209
8.64635 9.40683 10.03514 10.57064 11.45766
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.015513 B = 0.003496 C = 0.003259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1804.493328 B = 8008.015184 C = 8589.035310
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.133 3.867
3 N -0.274 5.274
4 N -0.378 5.378
5 C 0.094 3.906
6 C 0.285 3.715
7 F -0.089 7.089
8 C -0.275 4.275
9 C 0.589 3.411
10 O -0.506 6.506
11 N -0.595 5.595
12 C 0.113 3.887
13 C -0.132 4.132
14 C -0.120 4.120
15 C -0.121 4.121
16 C 0.124 3.876
17 H 0.072 0.928
18 C 0.163 3.837
19 N -0.600 5.600
20 C 0.162 3.838
21 C -0.251 4.251
22 H 0.063 0.937
23 C 0.005 3.995
24 N -0.906 5.906
25 Si 0.900 3.100
26 H -0.278 1.278
27 H -0.291 1.291
28 H -0.290 1.290
29 H 0.089 0.911
30 H 0.081 0.919
31 H 0.085 0.915
32 H 0.082 0.918
33 H 0.099 0.901
34 H 0.090 0.910
35 H 0.067 0.933
36 H 0.072 0.928
37 H 0.068 0.932
38 H 0.063 0.937
39 H 0.062 0.938
40 H 0.059 0.941
41 H 0.057 0.943
42 H 0.085 0.915
43 H 0.047 0.953
44 H 0.069 0.931
45 H 0.016 0.984
46 H 0.048 0.952
47 H -0.006 1.006
48 H 0.250 0.750
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.022 19.871 -9.676 24.697
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.034 4.034
3 N -0.097 5.097
4 N -0.163 5.163
5 C -0.046 4.046
6 C 0.138 3.862
7 F -0.068 7.068
8 C -0.292 4.292
9 C 0.373 3.627
10 O -0.380 6.380
11 N -0.329 5.329
12 C -0.011 4.011
13 C -0.171 4.171
14 C -0.157 4.157
15 C -0.159 4.159
16 C 0.020 3.980
17 H 0.090 0.910
18 C 0.036 3.964
19 N -0.324 5.324
20 C 0.017 3.983
21 C -0.381 4.381
22 H 0.081 0.919
23 C -0.194 4.194
24 N -0.551 5.551
25 Si 0.731 3.269
26 H -0.203 1.203
27 H -0.218 1.218
28 H -0.217 1.217
29 H 0.107 0.893
30 H 0.099 0.901
31 H 0.103 0.897
32 H 0.101 0.899
33 H 0.118 0.882
34 H 0.109 0.891
35 H 0.085 0.915
36 H 0.091 0.909
37 H 0.086 0.914
38 H 0.082 0.918
39 H 0.080 0.920
40 H 0.078 0.922
41 H 0.075 0.925
42 H 0.104 0.896
43 H 0.066 0.934
44 H 0.087 0.913
45 H 0.035 0.965
46 H 0.067 0.933
47 H 0.013 0.987
48 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 11.098 20.694 -8.994 25.146
hybrid contribution -0.370 -1.187 -0.207 1.261
sum 10.728 19.507 -9.202 24.089
Atomic orbital electron populations
1.20338 0.85078 1.04046 1.04287 1.22222 0.97247 0.87980 0.95934
1.77293 0.84092 1.21179 1.27110 1.48642 1.07240 1.02561 1.57869
1.22030 0.83772 0.94689 1.04149 1.17799 0.83443 0.81756 1.03154
1.91657 1.49690 1.71596 1.93851 1.19927 0.90186 0.96256 1.22787
1.17114 0.77865 0.83610 0.84065 1.90938 1.49854 1.65889 1.31355
1.48244 1.63298 1.16426 1.04914 1.21597 0.99008 0.95678 0.84808
1.21898 0.99058 0.96506 0.99603 1.21551 1.00527 0.95541 0.98116
1.21919 0.99772 1.00131 0.94092 1.22448 0.95385 0.77944 1.02258
0.91021 1.21365 0.98400 0.86706 0.89924 1.44072 1.02859 0.99752
1.85685 1.20781 0.90001 0.89747 0.97791 1.19163 0.82850 1.07282
1.28842 0.91895 1.25183 0.97408 0.99460 0.97313 1.70047 1.34418
1.15552 1.35064 0.86250 0.85700 0.77667 0.77322 1.20323 1.21813
1.21743 0.89286 0.90051 0.89651 0.89938 0.88235 0.89129 0.91468
0.90935 0.91368 0.91816 0.91954 0.92217 0.92469 0.89610 0.93438
0.91263 0.96525 0.93326 0.98715 0.93931
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.82 10.28 36.01 0.37 -0.45 16
2 C 0.13 1.68 7.26 -82.01 -0.60 1.09 16
3 N -0.27 -3.34 12.49 33.91 0.42 -2.91 16
4 N -0.38 -4.09 3.98 -67.94 -0.27 -4.36 16
5 C 0.09 0.55 11.43 59.85 0.68 1.24 16
6 C 0.29 3.67 8.42 -16.32 -0.14 3.53 16
7 F -0.09 -1.13 17.31 2.25 0.04 -1.09 16
8 C -0.28 -3.97 3.98 -104.97 -0.42 -4.39 16
9 C 0.59 10.17 7.15 -12.63 -0.09 10.08 16
10 O -0.51 -10.88 12.51 5.25 0.07 -10.81 16
11 N -0.60 -9.39 2.97 -166.58 -0.50 -9.89 16
12 C 0.11 1.35 6.32 -3.71 -0.02 1.33 16
13 C -0.13 -1.47 6.08 -26.62 -0.16 -1.64 16
14 C -0.12 -1.53 5.88 -26.69 -0.16 -1.69 16
15 C -0.12 -2.01 4.16 -26.61 -0.11 -2.13 16
16 C 0.12 2.30 3.14 -67.60 -0.21 2.09 16
17 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16
18 C 0.16 3.78 3.57 -4.04 -0.01 3.76 16
19 N -0.60 -15.78 2.56 -181.12 -0.46 -16.24 16
20 C 0.16 4.15 8.19 59.85 0.49 4.64 16
21 C -0.25 -7.10 9.58 -15.06 -0.14 -7.24 16
22 H 0.06 1.74 7.84 -52.48 -0.41 1.33 16
23 C 0.00 0.14 5.14 -17.43 -0.09 0.05 16
24 N -0.91 -27.39 10.93 55.49 0.61 -26.79 16
25 Si 0.90 22.32 29.56 -169.99 -5.02 17.29 16
26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16
28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16
29 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16
30 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16
31 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16
32 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16
33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16
35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16
36 H 0.07 0.82 6.17 -51.93 -0.32 0.49 16
37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16
39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
40 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16
41 H 0.06 0.99 8.09 -51.93 -0.42 0.57 16
42 H 0.09 1.61 6.89 -51.93 -0.36 1.25 16
43 H 0.05 1.15 7.00 -51.93 -0.36 0.79 16
44 H 0.07 1.77 6.29 -51.93 -0.33 1.44 16
45 H 0.02 0.46 7.75 -51.92 -0.40 0.06 16
46 H 0.05 1.32 7.06 -51.93 -0.37 0.95 16
47 H -0.01 -0.13 6.71 -51.93 -0.35 -0.47 16
48 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16
LS Contribution 383.88 15.07 5.79 5.79
Total: -1.00 -34.26 383.88 -7.46 -41.73
By element:
Atomic # 1 Polarization: 4.53 SS G_CDS: -7.52 Total: -2.98 kcal
Atomic # 6 Polarization: 10.89 SS G_CDS: -0.61 Total: 10.28 kcal
Atomic # 7 Polarization: -59.99 SS G_CDS: -0.20 Total: -60.19 kcal
Atomic # 8 Polarization: -10.88 SS G_CDS: 0.07 Total: -10.81 kcal
Atomic # 9 Polarization: -1.13 SS G_CDS: 0.04 Total: -1.09 kcal
Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal
Total LS contribution 5.79 Total: 5.79 kcal
Total: -34.26 -7.46 -41.73 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001707277922.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 84.396 kcal
(2) G-P(sol) polarization free energy of solvation -34.263 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.133 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.464 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) 42.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds