Wall clock time and date at job start Tue Mar 31 2020 22:07:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30380 * 125.96460 * 2 1
4 4 N 1.39918 * 109.01834 * 180.27849 * 3 2 1
5 5 C 1.46501 * 125.74112 * 179.70753 * 4 3 2
6 6 C 1.34415 * 108.51731 * 359.71490 * 4 3 2
7 7 F 1.35091 * 126.34773 * 180.02562 * 6 4 3
8 8 C 1.38506 * 107.30824 * 359.97438 * 6 4 3
9 9 C 1.47177 * 126.45618 * 180.02562 * 8 6 4
10 10 O 1.21627 * 119.99957 * 90.02370 * 9 8 6
11 11 N 1.34775 * 119.99516 * 270.02187 * 9 8 6
12 12 C 1.46928 * 120.63597 * 4.99579 * 11 9 8
13 13 C 1.53182 * 108.78037 * 126.40985 * 12 11 9
14 14 C 1.53036 * 109.31585 * 54.63364 * 13 12 11
15 15 C 1.53045 * 109.53623 * 298.63827 * 14 13 12
16 16 C 1.46924 * 120.63019 * 185.00843 * 11 9 8
17 17 H 1.09004 * 109.58665 * 113.65883 * 16 11 9
18 18 C 1.53003 * 109.58648 * 353.38120 * 16 11 9
19 19 N 1.46497 * 109.47189 * 178.87086 * 18 16 11
20 20 C 1.46504 * 119.99970 * 96.71236 * 19 18 16
21 21 C 1.36930 * 120.00027 * 276.71099 * 19 18 16
22 22 H 1.08004 * 120.00213 * 30.13839 * 21 19 18
23 23 C 1.38815 * 120.00131 * 210.14175 * 21 19 18
24 24 N 1.31623 * 120.00154 * 7.45918 * 23 21 19
25 25 Si 1.86805 * 120.00089 * 187.45930 * 23 21 19
26 26 H 1.48505 * 109.46981 * 0.02562 * 25 23 21
27 27 H 1.48497 * 109.46881 * 120.00025 * 25 23 21
28 28 H 1.48493 * 109.47428 * 239.99962 * 25 23 21
29 29 H 1.08995 * 109.47231 * 270.19733 * 1 2 3
30 30 H 1.09000 * 109.47011 * 30.19939 * 1 2 3
31 31 H 1.08997 * 109.46735 * 150.19134 * 1 2 3
32 32 H 1.08995 * 109.47156 * 270.00244 * 5 4 3
33 33 H 1.09000 * 109.46868 * 30.00553 * 5 4 3
34 34 H 1.09006 * 109.46859 * 149.99757 * 5 4 3
35 35 H 1.08997 * 109.58498 * 246.19970 * 12 11 9
36 36 H 1.09001 * 109.58246 * 6.61523 * 12 11 9
37 37 H 1.08997 * 109.49995 * 174.59294 * 13 12 11
38 38 H 1.09004 * 109.49590 * 294.67953 * 13 12 11
39 39 H 1.09000 * 109.45787 * 58.65539 * 14 13 12
40 40 H 1.08999 * 109.46214 * 178.62943 * 14 13 12
41 41 H 1.09002 * 109.49546 * 301.40447 * 15 14 13
42 42 H 1.09007 * 109.49566 * 181.31264 * 15 14 13
43 43 H 1.09002 * 109.46959 * 298.87195 * 18 16 11
44 44 H 1.08997 * 109.47343 * 58.86842 * 18 16 11
45 45 H 1.09010 * 109.47035 * 85.74455 * 20 19 18
46 46 H 1.08998 * 109.46952 * 205.73991 * 20 19 18
47 47 H 1.08993 * 109.47340 * 325.74618 * 20 19 18
48 48 H 0.96999 * 119.99971 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2727 1.0553 0.0000
4 7 3.6112 0.6475 -0.0064
5 6 4.7763 1.5355 -0.0145
6 6 3.6480 -0.6962 -0.0041
7 9 4.7576 -1.4667 -0.0081
8 6 2.3375 -1.1444 0.0044
9 6 1.8931 -2.5474 0.0102
10 8 1.7150 -3.1246 1.0660
11 7 1.6834 -3.1926 -1.1543
12 6 1.9979 -2.5460 -2.4357
13 6 2.9208 -3.4672 -3.2395
14 6 2.2685 -4.8450 -3.3742
15 6 2.0684 -5.4546 -1.9848
16 6 1.1357 -4.5559 -1.1668
17 1 0.1439 -4.5471 -1.6189
18 6 1.0414 -5.0838 0.2662
19 7 0.4700 -6.4327 0.2530
20 6 1.3518 -7.6021 0.2902
21 6 -0.8881 -6.6005 0.2060
22 1 -1.5062 -5.8664 -0.2895
23 6 -1.4707 -7.7142 0.7952
24 7 -0.7400 -8.5314 1.5237
25 14 -3.2919 -8.0532 0.5544
26 1 -3.8839 -6.9929 -0.3004
27 1 -3.4670 -9.3733 -0.1026
28 1 -3.9724 -8.0630 1.8742
29 1 -0.3633 0.0035 1.0276
30 1 -0.3633 0.8882 -0.5169
31 1 -0.3633 -0.8917 -0.5109
32 1 5.0597 1.7537 -1.0442
33 1 4.5286 2.4646 0.4988
34 1 5.6075 1.0489 0.4958
35 1 1.0775 -2.3737 -2.9935
36 1 2.4995 -1.5959 -2.2520
37 1 3.0845 -3.0436 -4.2304
38 1 3.8758 -3.5657 -2.7233
39 1 1.3023 -4.7425 -3.8684
40 1 2.9122 -5.4952 -3.9666
41 1 3.0314 -5.5345 -1.4805
42 1 1.6251 -6.4456 -2.0827
43 1 2.0374 -5.1154 0.7081
44 1 0.4035 -4.4248 0.8550
45 1 1.5951 -7.8409 1.3257
46 1 0.8476 -8.4520 -0.1697
47 1 2.2685 -7.3836 -0.2573
48 1 -1.1470 -9.3098 1.9351
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001707277922.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:07:56
Heat of formation + Delta-G solvation = 21.214064 kcal
Electronic energy + Delta-G solvation = -31355.225287 eV
Core-core repulsion = 27169.326864 eV
Total energy + Delta-G solvation = -4185.898423 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.79 seconds
Orbital eigenvalues (eV)
-50.46080 -42.58676 -41.19801 -38.40352 -37.25754 -35.26996 -33.93913 -33.71131
-31.94657 -31.22416 -30.41702 -28.41193 -27.70380 -27.00140 -25.65338 -24.18544
-23.34491 -22.32068 -21.93065 -21.38774 -20.20799 -18.88356 -18.50955 -17.99863
-17.62675 -17.22363 -16.98423 -16.74591 -16.08367 -15.74865 -15.62512 -15.44037
-15.36796 -14.89666 -14.84706 -14.53006 -14.50834 -14.30622 -14.24605 -14.09643
-13.82161 -13.60817 -13.28582 -13.06443 -13.03898 -12.97354 -12.83122 -12.53909
-12.39498 -12.10771 -12.04612 -11.92029 -11.84896 -11.70091 -11.54425 -11.43228
-10.61164 -10.45652 -10.40940 -9.78250 -9.50467 -8.60502 -7.81100 -5.34378
0.21141 0.87359 1.11492 1.46180 1.47130 1.48362 1.59392 2.03907
2.54474 2.73788 3.22278 3.34463 3.66355 3.75227 3.83735 3.93629
3.95462 4.07602 4.10615 4.18603 4.24015 4.31989 4.38534 4.47284
4.59445 4.62361 4.67955 4.69189 4.75820 4.83703 4.86593 4.90209
5.00922 5.05249 5.14076 5.20814 5.24183 5.28930 5.29646 5.41837
5.49656 5.62420 5.64172 5.67728 5.76798 6.23603 6.38510 6.46732
7.15146 7.23150 7.90539 8.40056 9.24701
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.015513 B = 0.003496 C = 0.003259
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1804.493328 B = 8008.015184 C = 8589.035310
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.130 3.870
3 N -0.276 5.276
4 N -0.365 5.365
5 C 0.081 3.919
6 C 0.287 3.713
7 F -0.089 7.089
8 C -0.300 4.300
9 C 0.588 3.412
10 O -0.562 6.562
11 N -0.591 5.591
12 C 0.109 3.891
13 C -0.126 4.126
14 C -0.113 4.113
15 C -0.115 4.115
16 C 0.137 3.863
17 H 0.065 0.935
18 C 0.176 3.824
19 N -0.615 5.615
20 C 0.181 3.819
21 C -0.260 4.260
22 H 0.067 0.933
23 C -0.052 4.052
24 N -0.941 5.941
25 Si 0.971 3.029
26 H -0.262 1.262
27 H -0.288 1.288
28 H -0.294 1.294
29 H 0.087 0.913
30 H 0.106 0.894
31 H 0.077 0.923
32 H 0.106 0.894
33 H 0.114 0.886
34 H 0.105 0.895
35 H 0.085 0.915
36 H 0.085 0.915
37 H 0.105 0.895
38 H 0.057 0.943
39 H 0.069 0.931
40 H 0.077 0.923
41 H 0.046 0.954
42 H 0.062 0.938
43 H 0.029 0.971
44 H 0.040 0.960
45 H -0.016 1.016
46 H 0.029 0.971
47 H 0.024 0.976
48 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.473 22.414 -12.359 28.049
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.036 4.036
3 N -0.099 5.099
4 N -0.150 5.150
5 C -0.057 4.057
6 C 0.138 3.862
7 F -0.069 7.069
8 C -0.316 4.316
9 C 0.375 3.625
10 O -0.440 6.440
11 N -0.323 5.323
12 C -0.013 4.013
13 C -0.164 4.164
14 C -0.150 4.150
15 C -0.153 4.153
16 C 0.032 3.968
17 H 0.083 0.917
18 C 0.050 3.950
19 N -0.339 5.339
20 C 0.036 3.964
21 C -0.390 4.390
22 H 0.084 0.916
23 C -0.247 4.247
24 N -0.588 5.588
25 Si 0.799 3.201
26 H -0.186 1.186
27 H -0.214 1.214
28 H -0.221 1.221
29 H 0.105 0.895
30 H 0.125 0.875
31 H 0.096 0.904
32 H 0.125 0.875
33 H 0.133 0.867
34 H 0.123 0.877
35 H 0.104 0.896
36 H 0.103 0.897
37 H 0.123 0.877
38 H 0.076 0.924
39 H 0.088 0.912
40 H 0.095 0.905
41 H 0.065 0.935
42 H 0.081 0.919
43 H 0.047 0.953
44 H 0.058 0.942
45 H 0.002 0.998
46 H 0.048 0.952
47 H 0.043 0.957
48 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges 11.579 23.317 -11.740 28.558
hybrid contribution -0.391 -1.861 0.660 2.013
sum 11.188 21.456 -11.081 26.614
Atomic orbital electron populations
1.20398 0.83969 1.04866 1.04444 1.22441 0.98063 0.87319 0.95759
1.77275 0.84678 1.20845 1.27097 1.49021 1.07922 1.02195 1.55865
1.22520 0.82437 0.94567 1.06223 1.17722 0.82896 0.82682 1.02884
1.91655 1.49566 1.71825 1.93825 1.19674 0.91499 0.94874 1.25591
1.17539 0.76821 0.84681 0.83491 1.90909 1.52412 1.67452 1.33268
1.48268 1.62388 1.15280 1.06400 1.21903 1.00362 0.96124 0.82881
1.21889 0.98047 0.95184 1.01233 1.21512 1.01643 0.96652 0.95228
1.21801 0.98206 0.98828 0.96469 1.21901 0.96041 0.79992 0.98832
0.91740 1.21180 0.96296 0.84844 0.92655 1.44291 1.02680 1.00901
1.86051 1.20497 0.90829 0.89162 0.95953 1.19481 0.83835 1.07287
1.28416 0.91562 1.26013 1.01989 0.99421 0.97271 1.70229 1.36267
1.15995 1.36294 0.85146 0.80122 0.77779 0.77071 1.18645 1.21447
1.22119 0.89475 0.87528 0.90447 0.87546 0.86705 0.87686 0.89646
0.89653 0.87683 0.92440 0.91184 0.90454 0.93478 0.91901 0.95287
0.94165 0.99766 0.95225 0.95733 0.94298
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.55 10.28 71.24 0.73 -0.82 16
2 C 0.13 3.15 7.26 43.55 0.32 3.47 16
3 N -0.28 -6.13 12.49 -46.64 -0.58 -6.71 16
4 N -0.37 -7.04 3.98 -368.86 -1.47 -8.50 16
5 C 0.08 0.69 11.43 127.77 1.46 2.15 16
6 C 0.29 6.98 8.42 84.36 0.71 7.69 16
7 F -0.09 -2.17 17.31 44.97 0.78 -1.39 16
8 C -0.30 -8.50 3.98 -20.09 -0.08 -8.58 16
9 C 0.59 20.79 7.15 86.59 0.62 21.41 16
10 O -0.56 -25.61 12.51 -4.12 -0.05 -25.67 16
11 N -0.59 -18.52 2.97 -799.18 -2.38 -20.89 16
12 C 0.11 2.34 6.32 86.36 0.55 2.88 16
13 C -0.13 -2.36 6.08 30.67 0.19 -2.18 16
14 C -0.11 -2.59 5.88 30.62 0.18 -2.41 16
15 C -0.11 -3.79 4.16 30.67 0.13 -3.66 16
16 C 0.14 5.17 3.14 44.97 0.14 5.31 16
17 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16
18 C 0.18 8.58 3.57 86.38 0.31 8.89 16
19 N -0.61 -33.69 2.56 -726.93 -1.86 -35.56 16
20 C 0.18 9.71 8.19 127.77 1.05 10.76 16
21 C -0.26 -15.08 9.58 84.04 0.80 -14.28 16
22 H 0.07 3.73 7.84 -2.91 -0.02 3.70 16
23 C -0.05 -3.06 5.14 84.86 0.44 -2.62 16
24 N -0.94 -58.87 10.93 21.65 0.24 -58.63 16
25 Si 0.97 46.63 29.56 68.60 2.03 48.65 16
26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16
27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16
28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16
29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16
30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16
31 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16
32 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16
33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16
34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16
35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16
36 H 0.09 1.67 6.17 -2.39 -0.01 1.66 16
37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16
39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16
40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16
41 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16
42 H 0.06 2.37 6.89 -2.38 -0.02 2.35 16
43 H 0.03 1.49 7.00 -2.39 -0.02 1.48 16
44 H 0.04 2.19 6.29 -2.39 -0.02 2.17 16
45 H -0.02 -0.95 7.75 -2.38 -0.02 -0.97 16
46 H 0.03 1.66 7.06 -2.39 -0.02 1.64 16
47 H 0.02 1.14 6.71 -2.39 -0.02 1.12 16
48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16
Total: -1.00 -78.28 383.88 5.20 -73.09
By element:
Atomic # 1 Polarization: 6.63 SS G_CDS: 0.96 Total: 7.59 kcal
Atomic # 6 Polarization: 20.48 SS G_CDS: 7.53 Total: 28.02 kcal
Atomic # 7 Polarization: -124.24 SS G_CDS: -6.05 Total: -130.29 kcal
Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.67 kcal
Atomic # 9 Polarization: -2.17 SS G_CDS: 0.78 Total: -1.39 kcal
Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal
Total: -78.28 5.20 -73.09 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001707277922.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 94.300 kcal
(2) G-P(sol) polarization free energy of solvation -78.282 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.018 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal
(6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.79 seconds