Wall clock time and date at job start Tue Mar 31 2020 22:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30380 * 125.96460 * 2 1 4 4 N 1.39918 * 109.01834 * 180.27849 * 3 2 1 5 5 C 1.46501 * 125.74112 * 179.70753 * 4 3 2 6 6 C 1.34415 * 108.51731 * 359.71490 * 4 3 2 7 7 F 1.35091 * 126.34773 * 180.02562 * 6 4 3 8 8 C 1.38506 * 107.30824 * 359.97438 * 6 4 3 9 9 C 1.47177 * 126.45618 * 180.02562 * 8 6 4 10 10 O 1.21627 * 119.99957 * 90.02370 * 9 8 6 11 11 N 1.34775 * 119.99516 * 270.02187 * 9 8 6 12 12 C 1.46928 * 120.63597 * 4.99579 * 11 9 8 13 13 C 1.53182 * 108.78037 * 126.40985 * 12 11 9 14 14 C 1.53036 * 109.31585 * 54.63364 * 13 12 11 15 15 C 1.53045 * 109.53623 * 298.63827 * 14 13 12 16 16 C 1.46924 * 120.63019 * 185.00843 * 11 9 8 17 17 H 1.09004 * 109.58665 * 113.65883 * 16 11 9 18 18 C 1.53003 * 109.58648 * 353.38120 * 16 11 9 19 19 N 1.46497 * 109.47189 * 178.87086 * 18 16 11 20 20 C 1.46504 * 119.99970 * 96.71236 * 19 18 16 21 21 C 1.36930 * 120.00027 * 276.71099 * 19 18 16 22 22 H 1.08004 * 120.00213 * 30.13839 * 21 19 18 23 23 C 1.38815 * 120.00131 * 210.14175 * 21 19 18 24 24 N 1.31623 * 120.00154 * 7.45918 * 23 21 19 25 25 Si 1.86805 * 120.00089 * 187.45930 * 23 21 19 26 26 H 1.48505 * 109.46981 * 0.02562 * 25 23 21 27 27 H 1.48497 * 109.46881 * 120.00025 * 25 23 21 28 28 H 1.48493 * 109.47428 * 239.99962 * 25 23 21 29 29 H 1.08995 * 109.47231 * 270.19733 * 1 2 3 30 30 H 1.09000 * 109.47011 * 30.19939 * 1 2 3 31 31 H 1.08997 * 109.46735 * 150.19134 * 1 2 3 32 32 H 1.08995 * 109.47156 * 270.00244 * 5 4 3 33 33 H 1.09000 * 109.46868 * 30.00553 * 5 4 3 34 34 H 1.09006 * 109.46859 * 149.99757 * 5 4 3 35 35 H 1.08997 * 109.58498 * 246.19970 * 12 11 9 36 36 H 1.09001 * 109.58246 * 6.61523 * 12 11 9 37 37 H 1.08997 * 109.49995 * 174.59294 * 13 12 11 38 38 H 1.09004 * 109.49590 * 294.67953 * 13 12 11 39 39 H 1.09000 * 109.45787 * 58.65539 * 14 13 12 40 40 H 1.08999 * 109.46214 * 178.62943 * 14 13 12 41 41 H 1.09002 * 109.49546 * 301.40447 * 15 14 13 42 42 H 1.09007 * 109.49566 * 181.31264 * 15 14 13 43 43 H 1.09002 * 109.46959 * 298.87195 * 18 16 11 44 44 H 1.08997 * 109.47343 * 58.86842 * 18 16 11 45 45 H 1.09010 * 109.47035 * 85.74455 * 20 19 18 46 46 H 1.08998 * 109.46952 * 205.73991 * 20 19 18 47 47 H 1.08993 * 109.47340 * 325.74618 * 20 19 18 48 48 H 0.96999 * 119.99971 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2727 1.0553 0.0000 4 7 3.6112 0.6475 -0.0064 5 6 4.7763 1.5355 -0.0145 6 6 3.6480 -0.6962 -0.0041 7 9 4.7576 -1.4667 -0.0081 8 6 2.3375 -1.1444 0.0044 9 6 1.8931 -2.5474 0.0102 10 8 1.7150 -3.1246 1.0660 11 7 1.6834 -3.1926 -1.1543 12 6 1.9979 -2.5460 -2.4357 13 6 2.9208 -3.4672 -3.2395 14 6 2.2685 -4.8450 -3.3742 15 6 2.0684 -5.4546 -1.9848 16 6 1.1357 -4.5559 -1.1668 17 1 0.1439 -4.5471 -1.6189 18 6 1.0414 -5.0838 0.2662 19 7 0.4700 -6.4327 0.2530 20 6 1.3518 -7.6021 0.2902 21 6 -0.8881 -6.6005 0.2060 22 1 -1.5062 -5.8664 -0.2895 23 6 -1.4707 -7.7142 0.7952 24 7 -0.7400 -8.5314 1.5237 25 14 -3.2919 -8.0532 0.5544 26 1 -3.8839 -6.9929 -0.3004 27 1 -3.4670 -9.3733 -0.1026 28 1 -3.9724 -8.0630 1.8742 29 1 -0.3633 0.0035 1.0276 30 1 -0.3633 0.8882 -0.5169 31 1 -0.3633 -0.8917 -0.5109 32 1 5.0597 1.7537 -1.0442 33 1 4.5286 2.4646 0.4988 34 1 5.6075 1.0489 0.4958 35 1 1.0775 -2.3737 -2.9935 36 1 2.4995 -1.5959 -2.2520 37 1 3.0845 -3.0436 -4.2304 38 1 3.8758 -3.5657 -2.7233 39 1 1.3023 -4.7425 -3.8684 40 1 2.9122 -5.4952 -3.9666 41 1 3.0314 -5.5345 -1.4805 42 1 1.6251 -6.4456 -2.0827 43 1 2.0374 -5.1154 0.7081 44 1 0.4035 -4.4248 0.8550 45 1 1.5951 -7.8409 1.3257 46 1 0.8476 -8.4520 -0.1697 47 1 2.2685 -7.3836 -0.2573 48 1 -1.1470 -9.3098 1.9351 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707277922.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:56 Heat of formation + Delta-G solvation = 21.214064 kcal Electronic energy + Delta-G solvation = -31355.225287 eV Core-core repulsion = 27169.326864 eV Total energy + Delta-G solvation = -4185.898423 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.186 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.46080 -42.58676 -41.19801 -38.40352 -37.25754 -35.26996 -33.93913 -33.71131 -31.94657 -31.22416 -30.41702 -28.41193 -27.70380 -27.00140 -25.65338 -24.18544 -23.34491 -22.32068 -21.93065 -21.38774 -20.20799 -18.88356 -18.50955 -17.99863 -17.62675 -17.22363 -16.98423 -16.74591 -16.08367 -15.74865 -15.62512 -15.44037 -15.36796 -14.89666 -14.84706 -14.53006 -14.50834 -14.30622 -14.24605 -14.09643 -13.82161 -13.60817 -13.28582 -13.06443 -13.03898 -12.97354 -12.83122 -12.53909 -12.39498 -12.10771 -12.04612 -11.92029 -11.84896 -11.70091 -11.54425 -11.43228 -10.61164 -10.45652 -10.40940 -9.78250 -9.50467 -8.60502 -7.81100 -5.34378 0.21141 0.87359 1.11492 1.46180 1.47130 1.48362 1.59392 2.03907 2.54474 2.73788 3.22278 3.34463 3.66355 3.75227 3.83735 3.93629 3.95462 4.07602 4.10615 4.18603 4.24015 4.31989 4.38534 4.47284 4.59445 4.62361 4.67955 4.69189 4.75820 4.83703 4.86593 4.90209 5.00922 5.05249 5.14076 5.20814 5.24183 5.28930 5.29646 5.41837 5.49656 5.62420 5.64172 5.67728 5.76798 6.23603 6.38510 6.46732 7.15146 7.23150 7.90539 8.40056 9.24701 Molecular weight = 338.19amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.003496 C = 0.003259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.493328 B = 8008.015184 C = 8589.035310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.130 3.870 3 N -0.276 5.276 4 N -0.365 5.365 5 C 0.081 3.919 6 C 0.287 3.713 7 F -0.089 7.089 8 C -0.300 4.300 9 C 0.588 3.412 10 O -0.562 6.562 11 N -0.591 5.591 12 C 0.109 3.891 13 C -0.126 4.126 14 C -0.113 4.113 15 C -0.115 4.115 16 C 0.137 3.863 17 H 0.065 0.935 18 C 0.176 3.824 19 N -0.615 5.615 20 C 0.181 3.819 21 C -0.260 4.260 22 H 0.067 0.933 23 C -0.052 4.052 24 N -0.941 5.941 25 Si 0.971 3.029 26 H -0.262 1.262 27 H -0.288 1.288 28 H -0.294 1.294 29 H 0.087 0.913 30 H 0.106 0.894 31 H 0.077 0.923 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.046 0.954 42 H 0.062 0.938 43 H 0.029 0.971 44 H 0.040 0.960 45 H -0.016 1.016 46 H 0.029 0.971 47 H 0.024 0.976 48 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.473 22.414 -12.359 28.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.036 4.036 3 N -0.099 5.099 4 N -0.150 5.150 5 C -0.057 4.057 6 C 0.138 3.862 7 F -0.069 7.069 8 C -0.316 4.316 9 C 0.375 3.625 10 O -0.440 6.440 11 N -0.323 5.323 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.150 4.150 15 C -0.153 4.153 16 C 0.032 3.968 17 H 0.083 0.917 18 C 0.050 3.950 19 N -0.339 5.339 20 C 0.036 3.964 21 C -0.390 4.390 22 H 0.084 0.916 23 C -0.247 4.247 24 N -0.588 5.588 25 Si 0.799 3.201 26 H -0.186 1.186 27 H -0.214 1.214 28 H -0.221 1.221 29 H 0.105 0.895 30 H 0.125 0.875 31 H 0.096 0.904 32 H 0.125 0.875 33 H 0.133 0.867 34 H 0.123 0.877 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.123 0.877 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.058 0.942 45 H 0.002 0.998 46 H 0.048 0.952 47 H 0.043 0.957 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 11.579 23.317 -11.740 28.558 hybrid contribution -0.391 -1.861 0.660 2.013 sum 11.188 21.456 -11.081 26.614 Atomic orbital electron populations 1.20398 0.83969 1.04866 1.04444 1.22441 0.98063 0.87319 0.95759 1.77275 0.84678 1.20845 1.27097 1.49021 1.07922 1.02195 1.55865 1.22520 0.82437 0.94567 1.06223 1.17722 0.82896 0.82682 1.02884 1.91655 1.49566 1.71825 1.93825 1.19674 0.91499 0.94874 1.25591 1.17539 0.76821 0.84681 0.83491 1.90909 1.52412 1.67452 1.33268 1.48268 1.62388 1.15280 1.06400 1.21903 1.00362 0.96124 0.82881 1.21889 0.98047 0.95184 1.01233 1.21512 1.01643 0.96652 0.95228 1.21801 0.98206 0.98828 0.96469 1.21901 0.96041 0.79992 0.98832 0.91740 1.21180 0.96296 0.84844 0.92655 1.44291 1.02680 1.00901 1.86051 1.20497 0.90829 0.89162 0.95953 1.19481 0.83835 1.07287 1.28416 0.91562 1.26013 1.01989 0.99421 0.97271 1.70229 1.36267 1.15995 1.36294 0.85146 0.80122 0.77779 0.77071 1.18645 1.21447 1.22119 0.89475 0.87528 0.90447 0.87546 0.86705 0.87686 0.89646 0.89653 0.87683 0.92440 0.91184 0.90454 0.93478 0.91901 0.95287 0.94165 0.99766 0.95225 0.95733 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.55 10.28 71.24 0.73 -0.82 16 2 C 0.13 3.15 7.26 43.55 0.32 3.47 16 3 N -0.28 -6.13 12.49 -46.64 -0.58 -6.71 16 4 N -0.37 -7.04 3.98 -368.86 -1.47 -8.50 16 5 C 0.08 0.69 11.43 127.77 1.46 2.15 16 6 C 0.29 6.98 8.42 84.36 0.71 7.69 16 7 F -0.09 -2.17 17.31 44.97 0.78 -1.39 16 8 C -0.30 -8.50 3.98 -20.09 -0.08 -8.58 16 9 C 0.59 20.79 7.15 86.59 0.62 21.41 16 10 O -0.56 -25.61 12.51 -4.12 -0.05 -25.67 16 11 N -0.59 -18.52 2.97 -799.18 -2.38 -20.89 16 12 C 0.11 2.34 6.32 86.36 0.55 2.88 16 13 C -0.13 -2.36 6.08 30.67 0.19 -2.18 16 14 C -0.11 -2.59 5.88 30.62 0.18 -2.41 16 15 C -0.11 -3.79 4.16 30.67 0.13 -3.66 16 16 C 0.14 5.17 3.14 44.97 0.14 5.31 16 17 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 18 C 0.18 8.58 3.57 86.38 0.31 8.89 16 19 N -0.61 -33.69 2.56 -726.93 -1.86 -35.56 16 20 C 0.18 9.71 8.19 127.77 1.05 10.76 16 21 C -0.26 -15.08 9.58 84.04 0.80 -14.28 16 22 H 0.07 3.73 7.84 -2.91 -0.02 3.70 16 23 C -0.05 -3.06 5.14 84.86 0.44 -2.62 16 24 N -0.94 -58.87 10.93 21.65 0.24 -58.63 16 25 Si 0.97 46.63 29.56 68.60 2.03 48.65 16 26 H -0.26 -11.79 7.11 99.48 0.71 -11.08 16 27 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 28 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 29 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.08 1.64 8.01 -2.39 -0.02 1.62 16 32 H 0.11 0.46 8.14 -2.39 -0.02 0.45 16 33 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.09 1.67 6.17 -2.39 -0.01 1.66 16 37 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.63 8.09 -2.39 -0.02 1.61 16 42 H 0.06 2.37 6.89 -2.38 -0.02 2.35 16 43 H 0.03 1.49 7.00 -2.39 -0.02 1.48 16 44 H 0.04 2.19 6.29 -2.39 -0.02 2.17 16 45 H -0.02 -0.95 7.75 -2.38 -0.02 -0.97 16 46 H 0.03 1.66 7.06 -2.39 -0.02 1.64 16 47 H 0.02 1.14 6.71 -2.39 -0.02 1.12 16 48 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -78.28 383.88 5.20 -73.09 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 0.96 Total: 7.59 kcal Atomic # 6 Polarization: 20.48 SS G_CDS: 7.53 Total: 28.02 kcal Atomic # 7 Polarization: -124.24 SS G_CDS: -6.05 Total: -130.29 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.05 Total: -25.67 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.78 Total: -1.39 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Total: -78.28 5.20 -73.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707277922.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.300 kcal (2) G-P(sol) polarization free energy of solvation -78.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds