Wall clock time and date at job start Tue Mar 31 2020 21:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47162 * 2 1 4 4 O 1.42904 * 109.47361 * 119.99402 * 2 1 3 5 5 C 1.42901 * 114.00363 * 270.00590 * 4 2 1 6 6 C 1.50697 * 109.47161 * 180.02562 * 5 4 2 7 7 C 1.38250 * 119.96918 * 269.71808 * 6 5 4 8 8 C 1.38199 * 120.02143 * 179.72643 * 7 6 5 9 9 C 1.38460 * 119.97564 * 0.57141 * 8 7 6 10 10 F 1.35101 * 120.02556 * 179.67584 * 9 8 7 11 11 C 1.38466 * 119.94881 * 359.70804 * 9 8 7 12 12 C 1.38196 * 119.97083 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47260 * 239.99456 * 2 1 3 14 14 O 1.21275 * 120.00101 * 244.99800 * 13 2 1 15 15 N 1.34773 * 119.99863 * 64.72883 * 13 2 1 16 16 C 1.46501 * 120.00123 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.47087 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46915 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99857 * 90.00143 * 19 18 17 21 21 C 1.36939 * 120.00106 * 270.00441 * 19 18 17 22 22 H 1.07996 * 120.00139 * 23.04495 * 21 19 18 23 23 C 1.38819 * 119.99941 * 203.04573 * 21 19 18 24 24 N 1.31614 * 119.99730 * 12.92946 * 23 21 19 25 25 Si 1.86796 * 119.99959 * 192.92527 * 23 21 19 26 26 H 1.48498 * 109.47089 * 60.00006 * 25 23 21 27 27 H 1.48499 * 109.47232 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47127 * 300.00301 * 25 23 21 29 29 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47244 * 300.00292 * 1 2 3 31 31 H 1.08995 * 109.47114 * 60.00796 * 1 2 3 32 32 H 1.09006 * 109.46351 * 299.99728 * 5 4 2 33 33 H 1.08992 * 109.47220 * 59.99123 * 5 4 2 34 34 H 1.07996 * 119.98990 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.01412 * 180.25701 * 8 7 6 36 36 H 1.07995 * 120.01235 * 179.97438 * 11 9 8 37 37 H 1.08005 * 119.98443 * 180.02562 * 12 11 9 38 38 H 0.97007 * 120.00188 * 359.97438 * 15 13 2 39 39 H 1.08996 * 109.47182 * 299.99407 * 16 15 13 40 40 H 1.09002 * 109.46944 * 59.99334 * 16 15 13 41 41 H 1.08996 * 109.47169 * 300.00080 * 17 16 15 42 42 H 1.09004 * 109.46854 * 59.99799 * 17 16 15 43 43 H 1.08994 * 109.47128 * 300.00383 * 18 17 16 44 44 H 1.09002 * 109.46666 * 60.00274 * 18 17 16 45 45 H 1.09000 * 109.46757 * 95.12230 * 20 19 18 46 46 H 1.09002 * 109.46975 * 215.12323 * 20 19 18 47 47 H 1.08995 * 109.47106 * 335.12660 * 20 19 18 48 48 H 0.97003 * 119.99901 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1831 2.2941 6 6 2.7014 -0.6280 3.4611 7 6 1.8024 -1.1949 4.3452 8 6 2.2609 -1.9436 5.4125 9 6 3.6214 -2.1160 5.6029 10 9 4.0709 -2.8422 6.6497 11 6 4.5211 -1.5428 4.7200 12 6 4.0601 -0.8000 3.6497 13 6 2.0323 -0.7105 -1.2304 14 8 2.6529 -1.7467 -1.1213 15 7 1.7871 -0.1973 -2.4522 16 6 2.2750 -0.8882 -3.6484 17 6 1.8639 -0.1019 -4.8949 18 6 2.3740 -0.8232 -6.1440 19 7 1.9810 -0.0700 -7.3375 20 6 2.8662 0.9668 -7.8738 21 6 0.7861 -0.3351 -7.9518 22 1 -0.0162 -0.7971 -7.3957 23 6 0.6061 -0.0099 -9.2893 24 7 1.6428 0.3123 -10.0334 25 14 -1.1073 -0.0298 -10.0329 26 1 -1.9722 0.9364 -9.3093 27 1 -1.0295 0.3516 -11.4660 28 1 -1.6824 -1.3938 -9.9147 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 2.9319 0.9515 2.0449 33 1 1.2538 0.6548 2.5588 34 1 0.7414 -1.0560 4.1995 35 1 1.5583 -2.3899 6.1007 36 1 5.5825 -1.6763 4.8678 37 1 4.7616 -0.3532 2.9607 38 1 1.2870 0.6293 -2.5397 39 1 3.3616 -0.9625 -3.6072 40 1 1.8438 -1.8884 -3.6914 41 1 0.7773 -0.0279 -4.9358 42 1 2.2948 0.8984 -4.8519 43 1 3.4607 -0.8969 -6.1028 44 1 1.9434 -1.8236 -6.1871 45 1 3.4843 0.5430 -8.6653 46 1 2.2670 1.7826 -8.2782 47 1 3.5060 1.3461 -7.0771 48 1 1.5170 0.5398 -10.9679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712986105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:23 Heat of formation + Delta-G solvation = -85.302535 kcal Electronic energy + Delta-G solvation = -27661.623945 eV Core-core repulsion = 23438.813865 eV Total energy + Delta-G solvation = -4222.810081 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.28853 -40.18082 -39.52393 -37.75757 -36.22841 -34.76931 -32.91271 -31.98655 -31.59221 -30.99177 -29.71002 -26.46316 -26.02979 -25.57359 -23.96447 -23.50634 -21.96256 -21.89724 -20.76264 -19.97077 -18.13882 -17.53857 -17.37125 -16.89836 -16.71251 -16.07463 -15.97643 -15.74916 -15.49552 -15.12796 -14.88488 -14.57743 -14.29044 -13.99835 -13.90055 -13.60750 -13.39223 -13.38444 -12.95305 -12.74201 -12.67696 -12.65874 -12.58333 -12.01278 -11.68715 -11.53693 -11.46145 -11.40346 -11.02910 -10.80291 -10.79373 -10.50935 -10.28179 -10.21265 -9.87576 -9.82413 -9.61469 -9.54246 -9.09054 -9.01140 -8.54927 -6.74646 -5.72486 -3.19706 0.60070 0.80032 2.56372 2.66713 3.17196 3.37814 3.43194 3.43930 3.74358 3.83201 4.22179 4.31629 4.45272 4.49085 4.52169 4.58954 4.65606 4.75029 4.76375 4.93384 5.09581 5.19064 5.24671 5.34193 5.42556 5.43802 5.45317 5.52014 5.67316 5.75109 5.77382 5.79817 5.87689 6.04138 6.08782 6.16034 6.39909 6.42195 6.50625 6.69559 6.73530 6.74976 6.92618 7.36317 7.48995 7.72686 7.79804 8.19960 8.39997 9.23747 9.87340 10.36462 11.32296 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.001492 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.400239 B =18757.033652 C =19184.205900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.070 3.930 3 H 0.087 0.913 4 O -0.350 6.350 5 C 0.100 3.900 6 C -0.099 4.099 7 C -0.068 4.068 8 C -0.158 4.158 9 C 0.103 3.897 10 F -0.140 7.140 11 C -0.156 4.156 12 C -0.065 4.065 13 C 0.510 3.490 14 O -0.522 6.522 15 N -0.724 5.724 16 C 0.121 3.879 17 C -0.150 4.150 18 C 0.155 3.845 19 N -0.603 5.603 20 C 0.163 3.837 21 C -0.257 4.257 22 H 0.067 0.933 23 C 0.002 3.998 24 N -0.908 5.908 25 Si 0.905 3.095 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.283 1.283 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.135 0.865 38 H 0.400 0.600 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.038 0.962 44 H 0.049 0.951 45 H 0.031 0.969 46 H 0.039 0.961 47 H -0.003 1.003 48 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.012 2.929 30.771 30.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.009 3.991 3 H 0.104 0.896 4 O -0.268 6.268 5 C 0.024 3.976 6 C -0.100 4.100 7 C -0.086 4.086 8 C -0.176 4.176 9 C 0.084 3.916 10 F -0.118 7.118 11 C -0.175 4.175 12 C -0.083 4.083 13 C 0.294 3.706 14 O -0.396 6.396 15 N -0.377 5.377 16 C -0.002 4.002 17 C -0.191 4.191 18 C 0.027 3.973 19 N -0.325 5.325 20 C 0.018 3.982 21 C -0.386 4.386 22 H 0.085 0.915 23 C -0.197 4.197 24 N -0.553 5.553 25 Si 0.735 3.265 26 H -0.211 1.211 27 H -0.216 1.216 28 H -0.209 1.209 29 H 0.091 0.909 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.152 0.848 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.234 0.766 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.016 0.984 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 1.556 1.983 30.671 30.774 hybrid contribution -1.151 0.583 -0.354 1.338 sum 0.404 2.566 30.317 30.428 Atomic orbital electron populations 1.22241 0.93381 1.04052 1.03213 1.21933 0.95212 0.96311 0.85684 0.89556 1.88149 1.86538 1.33644 1.18451 1.21402 0.99942 0.91630 0.84643 1.19608 0.93548 1.00719 0.96090 1.20935 1.00062 0.94696 0.92885 1.21145 0.93862 1.02155 1.00476 1.17793 0.92818 0.94565 0.86437 1.91510 1.89885 1.75240 1.55208 1.21166 1.00244 1.00315 0.95785 1.20971 0.95148 0.96258 0.95968 1.20309 0.80242 0.85757 0.84311 1.90731 1.39443 1.23018 1.86458 1.46082 1.57727 1.28201 1.05732 1.21477 0.99248 0.96466 0.83019 1.22535 1.02185 0.99851 0.94500 1.20597 0.96714 0.94222 0.85811 1.43882 1.20688 1.39482 1.28473 1.20785 0.92513 0.91043 0.93861 1.19141 0.89727 1.37646 0.92128 0.91488 1.25032 0.97186 1.01555 0.95890 1.70059 1.27861 1.50955 1.06403 0.86337 0.84159 0.77953 0.78083 1.21147 1.21632 1.20920 0.90929 0.91266 0.90639 0.91953 0.91910 0.84760 0.84517 0.84460 0.84689 0.76641 0.91720 0.91545 0.91520 0.92226 0.94402 0.93252 0.95095 0.94191 0.98438 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.48 37.15 0.35 -0.87 16 2 C 0.07 0.64 3.13 -27.89 -0.09 0.55 16 3 H 0.09 0.55 7.79 -51.93 -0.40 0.14 16 4 O -0.35 -3.80 9.51 -55.09 -0.52 -4.32 16 5 C 0.10 0.72 5.87 36.00 0.21 0.93 16 6 C -0.10 -0.79 5.51 -104.62 -0.58 -1.37 16 7 C -0.07 -0.49 9.70 -39.59 -0.38 -0.87 16 8 C -0.16 -1.18 10.03 -39.51 -0.40 -1.57 16 9 C 0.10 0.89 7.30 -39.42 -0.29 0.60 16 10 F -0.14 -1.31 17.27 2.25 0.04 -1.27 16 11 C -0.16 -1.23 10.03 -39.51 -0.40 -1.62 16 12 C -0.07 -0.51 9.70 -39.59 -0.38 -0.89 16 13 C 0.51 6.64 7.18 -10.99 -0.08 6.56 16 14 O -0.52 -9.30 16.51 -14.30 -0.24 -9.54 16 15 N -0.72 -8.44 5.51 -60.29 -0.33 -8.77 16 16 C 0.12 1.70 5.67 -4.04 -0.02 1.67 16 17 C -0.15 -2.37 5.65 -26.73 -0.15 -2.52 16 18 C 0.15 3.07 5.64 -4.04 -0.02 3.04 16 19 N -0.60 -14.92 2.92 -181.12 -0.53 -15.45 16 20 C 0.16 3.96 8.98 59.85 0.54 4.50 16 21 C -0.26 -6.97 9.65 -15.06 -0.15 -7.11 16 22 H 0.07 1.76 7.86 -52.49 -0.41 1.35 16 23 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 24 N -0.91 -26.43 10.71 55.49 0.59 -25.83 16 25 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 26 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.36 7.87 -51.93 -0.41 -0.05 16 31 H 0.07 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.06 0.36 8.03 -51.93 -0.42 -0.06 16 33 H 0.06 0.32 7.81 -51.93 -0.41 -0.09 16 34 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 35 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 37 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.40 3.55 8.23 -40.82 -0.34 3.22 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 44 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 45 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 46 H 0.04 1.04 7.34 -51.93 -0.38 0.65 16 47 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 48 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 407.52 15.07 6.14 6.14 Total: -1.00 -34.30 407.52 -9.55 -43.85 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -7.75 Total: -2.39 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.92 Total: 0.99 kcal Atomic # 7 Polarization: -49.79 SS G_CDS: -0.27 Total: -50.06 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -0.76 Total: -13.86 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -34.30 -9.55 -43.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712986105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.451 kcal (2) G-P(sol) polarization free energy of solvation -34.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds