Wall clock time and date at job start Tue Mar 31 2020 21:18:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47162 * 2 1 4 4 O 1.42904 * 109.47361 * 119.99402 * 2 1 3 5 5 C 1.42901 * 114.00363 * 270.00590 * 4 2 1 6 6 C 1.50697 * 109.47161 * 180.02562 * 5 4 2 7 7 C 1.38250 * 119.96918 * 269.71808 * 6 5 4 8 8 C 1.38199 * 120.02143 * 179.72643 * 7 6 5 9 9 C 1.38460 * 119.97564 * 0.57141 * 8 7 6 10 10 F 1.35101 * 120.02556 * 179.67584 * 9 8 7 11 11 C 1.38466 * 119.94881 * 359.70804 * 9 8 7 12 12 C 1.38196 * 119.97083 * 359.97438 * 11 9 8 13 13 C 1.50699 * 109.47260 * 239.99456 * 2 1 3 14 14 O 1.21275 * 120.00101 * 244.99800 * 13 2 1 15 15 N 1.34773 * 119.99863 * 64.72883 * 13 2 1 16 16 C 1.46501 * 120.00123 * 180.02562 * 15 13 2 17 17 C 1.53006 * 109.47087 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.46915 * 179.97438 * 17 16 15 19 19 N 1.46497 * 109.46979 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99857 * 90.00143 * 19 18 17 21 21 C 1.36939 * 120.00106 * 270.00441 * 19 18 17 22 22 H 1.07996 * 120.00139 * 23.04495 * 21 19 18 23 23 C 1.38819 * 119.99941 * 203.04573 * 21 19 18 24 24 N 1.31614 * 119.99730 * 12.92946 * 23 21 19 25 25 Si 1.86796 * 119.99959 * 192.92527 * 23 21 19 26 26 H 1.48498 * 109.47089 * 60.00006 * 25 23 21 27 27 H 1.48499 * 109.47232 * 180.02562 * 25 23 21 28 28 H 1.48496 * 109.47127 * 300.00301 * 25 23 21 29 29 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47244 * 300.00292 * 1 2 3 31 31 H 1.08995 * 109.47114 * 60.00796 * 1 2 3 32 32 H 1.09006 * 109.46351 * 299.99728 * 5 4 2 33 33 H 1.08992 * 109.47220 * 59.99123 * 5 4 2 34 34 H 1.07996 * 119.98990 * 359.97438 * 7 6 5 35 35 H 1.07995 * 120.01412 * 180.25701 * 8 7 6 36 36 H 1.07995 * 120.01235 * 179.97438 * 11 9 8 37 37 H 1.08005 * 119.98443 * 180.02562 * 12 11 9 38 38 H 0.97007 * 120.00188 * 359.97438 * 15 13 2 39 39 H 1.08996 * 109.47182 * 299.99407 * 16 15 13 40 40 H 1.09002 * 109.46944 * 59.99334 * 16 15 13 41 41 H 1.08996 * 109.47169 * 300.00080 * 17 16 15 42 42 H 1.09004 * 109.46854 * 59.99799 * 17 16 15 43 43 H 1.08994 * 109.47128 * 300.00383 * 18 17 16 44 44 H 1.09002 * 109.46666 * 60.00274 * 18 17 16 45 45 H 1.09000 * 109.46757 * 95.12230 * 20 19 18 46 46 H 1.09002 * 109.46975 * 215.12323 * 20 19 18 47 47 H 1.08995 * 109.47106 * 335.12660 * 20 19 18 48 48 H 0.97003 * 119.99901 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 2.2000 0.1831 2.2941 6 6 2.7014 -0.6280 3.4611 7 6 1.8024 -1.1949 4.3452 8 6 2.2609 -1.9436 5.4125 9 6 3.6214 -2.1160 5.6029 10 9 4.0709 -2.8422 6.6497 11 6 4.5211 -1.5428 4.7200 12 6 4.0601 -0.8000 3.6497 13 6 2.0323 -0.7105 -1.2304 14 8 2.6529 -1.7467 -1.1213 15 7 1.7871 -0.1973 -2.4522 16 6 2.2750 -0.8882 -3.6484 17 6 1.8639 -0.1019 -4.8949 18 6 2.3740 -0.8232 -6.1440 19 7 1.9810 -0.0700 -7.3375 20 6 2.8662 0.9668 -7.8738 21 6 0.7861 -0.3351 -7.9518 22 1 -0.0162 -0.7971 -7.3957 23 6 0.6061 -0.0099 -9.2893 24 7 1.6428 0.3123 -10.0334 25 14 -1.1073 -0.0298 -10.0329 26 1 -1.9722 0.9364 -9.3093 27 1 -1.0295 0.3516 -11.4660 28 1 -1.6824 -1.3938 -9.9147 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 2.9319 0.9515 2.0449 33 1 1.2538 0.6548 2.5588 34 1 0.7414 -1.0560 4.1995 35 1 1.5583 -2.3899 6.1007 36 1 5.5825 -1.6763 4.8678 37 1 4.7616 -0.3532 2.9607 38 1 1.2870 0.6293 -2.5397 39 1 3.3616 -0.9625 -3.6072 40 1 1.8438 -1.8884 -3.6914 41 1 0.7773 -0.0279 -4.9358 42 1 2.2948 0.8984 -4.8519 43 1 3.4607 -0.8969 -6.1028 44 1 1.9434 -1.8236 -6.1871 45 1 3.4843 0.5430 -8.6653 46 1 2.2670 1.7826 -8.2782 47 1 3.5060 1.3461 -7.0771 48 1 1.5170 0.5398 -10.9679 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712986105.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:22 Heat of formation + Delta-G solvation = -105.532993 kcal Electronic energy + Delta-G solvation = -27662.501204 eV Core-core repulsion = 23438.813865 eV Total energy + Delta-G solvation = -4223.687339 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.95011 -41.05151 -40.18094 -38.53176 -37.85885 -36.15090 -33.98274 -33.23597 -32.13339 -32.00314 -31.00779 -27.93796 -27.19734 -26.88944 -24.97022 -24.05604 -23.37377 -22.49369 -22.14793 -21.19111 -18.75337 -18.70265 -18.38433 -18.07570 -17.50318 -16.99600 -16.83367 -16.66196 -16.61958 -16.29182 -15.98890 -15.58743 -15.30686 -15.09208 -14.89037 -14.59842 -14.50618 -14.42729 -14.22089 -13.98849 -13.48123 -13.29026 -13.25668 -13.10701 -13.02718 -12.75239 -12.62056 -12.57751 -12.46289 -12.29342 -12.10030 -12.07104 -11.98463 -11.82799 -11.46595 -11.02360 -10.62776 -10.47794 -10.09556 -10.09072 -9.68942 -8.75459 -7.80375 -5.29936 0.01147 0.25258 1.48730 1.50302 1.57184 1.59137 1.87564 2.49063 2.54330 3.11235 3.25021 3.33106 3.65507 3.68833 3.71713 3.83889 3.94801 3.99289 4.10039 4.15227 4.20556 4.26823 4.31495 4.47448 4.49273 4.59927 4.67068 4.74416 4.81210 4.85023 4.88543 4.94743 4.95894 4.97426 5.11994 5.21370 5.24569 5.27375 5.31666 5.43694 5.49829 5.53124 5.65775 5.73727 5.87129 6.08303 6.35230 6.59140 7.17770 7.25024 7.90121 8.33776 9.22583 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.029959 B = 0.001492 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.400239 B =18757.033652 C =19184.205900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.075 3.925 3 H 0.122 0.878 4 O -0.383 6.383 5 C 0.097 3.903 6 C -0.111 4.111 7 C -0.071 4.071 8 C -0.162 4.162 9 C 0.081 3.919 10 F -0.149 7.149 11 C -0.164 4.164 12 C -0.077 4.077 13 C 0.505 3.495 14 O -0.578 6.578 15 N -0.712 5.712 16 C 0.132 3.868 17 C -0.126 4.126 18 C 0.148 3.852 19 N -0.620 5.620 20 C 0.176 3.824 21 C -0.263 4.263 22 H 0.072 0.928 23 C -0.056 4.056 24 N -0.941 5.941 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.296 1.296 28 H -0.277 1.277 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.156 0.844 35 H 0.152 0.848 36 H 0.148 0.852 37 H 0.145 0.855 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.048 0.952 44 H 0.041 0.959 45 H 0.001 0.999 46 H 0.015 0.985 47 H 0.033 0.967 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 4.341 32.296 32.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 H 0.140 0.860 4 O -0.302 6.302 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.180 4.180 9 C 0.062 3.938 10 F -0.128 7.128 11 C -0.183 4.183 12 C -0.095 4.095 13 C 0.292 3.708 14 O -0.457 6.457 15 N -0.366 5.366 16 C 0.008 3.992 17 C -0.166 4.166 18 C 0.022 3.978 19 N -0.344 5.344 20 C 0.031 3.969 21 C -0.393 4.393 22 H 0.090 0.910 23 C -0.250 4.250 24 N -0.588 5.588 25 Si 0.797 3.203 26 H -0.202 1.202 27 H -0.223 1.223 28 H -0.203 1.203 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.174 0.826 35 H 0.170 0.830 36 H 0.165 0.835 37 H 0.163 0.837 38 H 0.253 0.747 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.066 0.934 44 H 0.060 0.940 45 H 0.020 0.980 46 H 0.034 0.966 47 H 0.052 0.948 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.034 3.421 32.241 32.422 hybrid contribution -0.630 0.107 -0.764 0.997 sum -0.596 3.528 31.477 31.680 Atomic orbital electron populations 1.22249 0.91652 1.03310 1.05223 1.22008 0.96268 0.96926 0.83360 0.86032 1.88108 1.86928 1.35562 1.19588 1.21613 1.01763 0.91269 0.83227 1.19891 0.93707 1.00904 0.96618 1.21228 1.01158 0.94095 0.92393 1.21398 0.93698 1.02032 1.00905 1.18075 0.93670 0.95350 0.86726 1.91480 1.90060 1.75593 1.55674 1.21358 1.00883 1.00269 0.95789 1.21195 0.95728 0.96417 0.96125 1.21142 0.79035 0.85127 0.85534 1.90706 1.42070 1.25616 1.87273 1.45899 1.57327 1.28495 1.04845 1.21164 0.98955 0.95802 0.83322 1.22144 1.01630 0.99734 0.93116 1.20785 0.97479 0.93896 0.85642 1.44140 1.20273 1.40217 1.29727 1.20536 0.92033 0.90143 0.94170 1.19504 0.90813 1.36600 0.92361 0.90988 1.25816 1.00629 1.02075 0.96510 1.70234 1.29719 1.52552 1.06282 0.85318 0.80055 0.78165 0.76765 1.20157 1.22276 1.20280 0.93033 0.88686 0.89216 0.90478 0.89252 0.82615 0.82980 0.83458 0.83708 0.74663 0.92104 0.92742 0.91934 0.91327 0.93394 0.94014 0.98047 0.96602 0.94813 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 9.48 71.98 0.68 -1.14 16 2 C 0.08 1.16 3.13 29.85 0.09 1.25 16 3 H 0.12 1.00 7.79 -2.38 -0.02 0.98 16 4 O -0.38 -7.51 9.51 -129.99 -1.24 -8.75 16 5 C 0.10 1.11 5.87 71.23 0.42 1.53 16 6 C -0.11 -1.58 5.51 -19.86 -0.11 -1.69 16 7 C -0.07 -0.90 9.70 22.26 0.22 -0.68 16 8 C -0.16 -2.26 10.03 22.31 0.22 -2.04 16 9 C 0.08 1.38 7.30 22.38 0.16 1.54 16 10 F -0.15 -2.83 17.27 44.97 0.78 -2.06 16 11 C -0.16 -2.55 10.03 22.31 0.22 -2.33 16 12 C -0.08 -1.14 9.70 22.26 0.22 -0.92 16 13 C 0.50 12.34 7.18 87.66 0.63 12.97 16 14 O -0.58 -20.53 16.51 15.98 0.26 -20.27 16 15 N -0.71 -14.99 5.51 -463.06 -2.55 -17.54 16 16 C 0.13 3.50 5.67 86.38 0.49 3.99 16 17 C -0.13 -3.73 5.65 30.60 0.17 -3.55 16 18 C 0.15 5.72 5.64 86.38 0.49 6.21 16 19 N -0.62 -30.37 2.92 -726.94 -2.12 -32.49 16 20 C 0.18 8.55 8.98 127.77 1.15 9.69 16 21 C -0.26 -14.14 9.65 84.03 0.81 -13.33 16 22 H 0.07 3.72 7.86 -2.91 -0.02 3.70 16 23 C -0.06 -3.08 5.10 84.86 0.43 -2.65 16 24 N -0.94 -55.64 10.71 21.65 0.23 -55.41 16 25 Si 0.97 44.41 29.57 68.60 2.03 46.44 16 26 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 27 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 28 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 29 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 31 H 0.09 0.72 7.90 -2.39 -0.02 0.70 16 32 H 0.08 0.64 8.03 -2.38 -0.02 0.62 16 33 H 0.09 0.53 7.81 -2.39 -0.02 0.51 16 34 H 0.16 1.19 8.06 -2.91 -0.02 1.17 16 35 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 36 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 37 H 0.15 1.73 8.06 -2.91 -0.02 1.70 16 38 H 0.42 6.01 8.23 -92.70 -0.76 5.25 16 39 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.05 1.74 8.07 -2.39 -0.02 1.72 16 44 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 45 H 0.00 0.07 7.34 -2.39 -0.02 0.05 16 46 H 0.02 0.81 7.34 -2.39 -0.02 0.79 16 47 H 0.03 1.35 8.03 -2.39 -0.02 1.34 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -75.79 407.52 3.87 -71.91 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 0.19 Total: 9.29 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.30 Total: 8.86 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -4.45 Total: -105.44 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.97 Total: -29.01 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.78 Total: -2.06 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -75.79 3.87 -71.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712986105.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.619 kcal (2) G-P(sol) polarization free energy of solvation -75.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds