Wall clock time and date at job start Tue Mar 31 2020 21:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47066 * 2 1 4 4 O 1.42904 * 109.46650 * 240.00578 * 2 1 3 5 5 C 1.42897 * 113.99884 * 89.99992 * 4 2 1 6 6 C 1.50707 * 109.47371 * 179.97438 * 5 4 2 7 7 C 1.38251 * 119.97161 * 269.72984 * 6 5 4 8 8 C 1.38193 * 120.02110 * 179.72415 * 7 6 5 9 9 C 1.38467 * 119.97576 * 0.56621 * 8 7 6 10 10 F 1.35101 * 120.02647 * 179.68638 * 9 8 7 11 11 C 1.38459 * 119.94549 * 359.70410 * 9 8 7 12 12 C 1.38198 * 119.97591 * 0.02562 * 11 9 8 13 13 C 1.50694 * 109.47555 * 120.00843 * 2 1 3 14 14 O 1.21278 * 120.00296 * 114.99393 * 13 2 1 15 15 N 1.34779 * 119.99736 * 294.99618 * 13 2 1 16 16 C 1.46500 * 119.99999 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.47263 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47244 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47199 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99998 * 90.00390 * 19 18 17 21 21 C 1.36935 * 120.00464 * 270.00071 * 19 18 17 22 22 H 1.08003 * 120.00269 * 142.03572 * 21 19 18 23 23 C 1.38817 * 119.99902 * 322.03574 * 21 19 18 24 24 N 1.31616 * 120.00109 * 157.01776 * 23 21 19 25 25 Si 1.86794 * 119.99896 * 337.02243 * 23 21 19 26 26 H 1.48504 * 109.47307 * 95.67830 * 25 23 21 27 27 H 1.48499 * 109.47143 * 215.67884 * 25 23 21 28 28 H 1.48505 * 109.47301 * 335.67902 * 25 23 21 29 29 H 1.08999 * 109.47407 * 59.99444 * 1 2 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46898 * 299.99610 * 1 2 3 32 32 H 1.09000 * 109.47626 * 300.00059 * 5 4 2 33 33 H 1.09002 * 109.47410 * 59.99811 * 5 4 2 34 34 H 1.07995 * 119.98731 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01620 * 180.24941 * 8 7 6 36 36 H 1.08003 * 120.01060 * 179.97438 * 11 9 8 37 37 H 1.08004 * 119.98661 * 179.97438 * 12 11 9 38 38 H 0.96993 * 120.00218 * 0.02562 * 15 13 2 39 39 H 1.09004 * 109.47399 * 300.00428 * 16 15 13 40 40 H 1.09006 * 109.47115 * 60.00491 * 16 15 13 41 41 H 1.09002 * 109.46644 * 300.00137 * 17 16 15 42 42 H 1.08997 * 109.47388 * 60.00060 * 17 16 15 43 43 H 1.09004 * 109.47189 * 300.00086 * 18 17 16 44 44 H 1.09006 * 109.47343 * 60.00160 * 18 17 16 45 45 H 1.08999 * 109.47348 * 85.64322 * 20 19 18 46 46 H 1.08997 * 109.47288 * 205.65381 * 20 19 18 47 47 H 1.09005 * 109.46419 * 325.64660 * 20 19 18 48 48 H 0.97001 * 120.00292 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.1999 0.1831 -2.2941 6 6 2.7012 -0.6279 -3.4613 7 6 4.0600 -0.7949 -3.6534 8 6 4.5207 -1.5431 -4.7200 9 6 3.6210 -2.1158 -5.6032 10 9 4.0704 -2.8422 -6.6499 11 6 2.2605 -1.9431 -5.4129 12 6 1.8020 -1.1991 -4.3423 13 6 2.0324 -0.7105 1.2303 14 8 2.6530 -1.7468 1.1212 15 7 1.7921 -0.1944 2.4519 16 6 2.2800 -0.8854 3.6480 17 6 1.8749 -0.0956 4.8942 18 6 2.3850 -0.8170 6.1433 19 7 1.9977 -0.0604 7.3365 20 6 0.7199 -0.3382 7.9971 21 6 2.8299 0.9063 7.8345 22 1 2.4169 1.8195 8.2370 23 6 4.2044 0.7126 7.8219 24 7 5.0154 1.7486 7.8592 25 14 4.9031 -1.0183 7.7518 26 1 5.2116 -1.3710 6.3426 27 1 6.1459 -1.0837 8.5619 28 1 3.9071 -1.9766 8.2952 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2537 0.6550 -2.5588 33 1 2.9318 0.9515 -2.0450 34 1 4.7616 -0.3439 -2.9673 35 1 5.5822 -1.6769 -4.8677 36 1 1.5579 -2.3889 -6.1013 37 1 0.7408 -1.0639 -4.1939 38 1 1.2954 0.6341 2.5392 39 1 1.8450 -1.8838 3.6937 40 1 3.3663 -0.9640 3.6045 41 1 2.3096 0.9029 4.8487 42 1 0.7886 -0.0174 4.9376 43 1 1.9507 -1.8157 6.1890 44 1 3.4714 -0.8948 6.0998 45 1 0.8457 -1.1616 8.7001 46 1 0.3877 0.5504 8.5339 47 1 -0.0245 -0.6099 7.2486 48 1 5.9759 1.6133 7.8501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001712986106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:27 Heat of formation + Delta-G solvation = -81.421496 kcal Electronic energy + Delta-G solvation = -28055.017089 eV Core-core repulsion = 23832.375303 eV Total energy + Delta-G solvation = -4222.641786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.26154 -40.14081 -39.48879 -37.72757 -36.46421 -34.77035 -32.84165 -31.84685 -31.56077 -31.25533 -30.24076 -26.53967 -26.35507 -25.59105 -23.91659 -23.47384 -21.90779 -21.75577 -20.88749 -20.21470 -18.11051 -17.52602 -17.34310 -16.87522 -16.72373 -16.05588 -15.94669 -15.79541 -15.45311 -15.30814 -14.86389 -14.66576 -14.34159 -13.97728 -13.81796 -13.67024 -13.45378 -13.36312 -13.24532 -12.79696 -12.68153 -12.63173 -12.55977 -12.16744 -11.94819 -11.73913 -11.46981 -11.41604 -11.36434 -11.21806 -10.93234 -10.54298 -10.42337 -10.23381 -9.82335 -9.57656 -9.54763 -9.51066 -9.05890 -8.96624 -8.53858 -6.85330 -6.03906 -3.45118 0.63234 0.83149 2.61589 2.69845 3.20479 3.30770 3.46447 3.51926 3.77862 3.86106 4.25474 4.35596 4.48469 4.50074 4.55184 4.62135 4.69936 4.78663 4.80002 4.92807 4.97257 5.13003 5.24313 5.31476 5.35329 5.46320 5.48606 5.55190 5.61945 5.70257 5.75633 5.80454 5.81785 6.02547 6.07619 6.13035 6.25212 6.30912 6.45257 6.46878 6.59023 6.68504 6.72532 6.74119 6.89732 7.53969 8.01992 8.24732 8.33811 8.95103 9.67520 10.08920 11.11579 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.001810 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.662619 B =15462.635857 C =16219.422623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.070 3.930 3 H 0.088 0.912 4 O -0.350 6.350 5 C 0.100 3.900 6 C -0.099 4.099 7 C -0.065 4.065 8 C -0.156 4.156 9 C 0.103 3.897 10 F -0.140 7.140 11 C -0.158 4.158 12 C -0.068 4.068 13 C 0.509 3.491 14 O -0.522 6.522 15 N -0.723 5.723 16 C 0.119 3.881 17 C -0.145 4.145 18 C 0.142 3.858 19 N -0.612 5.612 20 C 0.124 3.876 21 C -0.272 4.272 22 H 0.078 0.922 23 C 0.036 3.964 24 N -0.898 5.898 25 Si 0.876 3.124 26 H -0.284 1.284 27 H -0.300 1.300 28 H -0.270 1.270 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.400 0.600 39 H 0.064 0.936 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.059 0.941 43 H 0.041 0.959 44 H 0.055 0.945 45 H 0.006 0.994 46 H 0.045 0.955 47 H 0.026 0.974 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.323 -1.953 -26.205 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.008 3.992 3 H 0.106 0.894 4 O -0.268 6.268 5 C 0.023 3.977 6 C -0.099 4.099 7 C -0.083 4.083 8 C -0.175 4.175 9 C 0.084 3.916 10 F -0.119 7.119 11 C -0.177 4.177 12 C -0.086 4.086 13 C 0.294 3.706 14 O -0.397 6.397 15 N -0.376 5.376 16 C -0.005 4.005 17 C -0.186 4.186 18 C 0.015 3.985 19 N -0.336 5.336 20 C -0.021 4.021 21 C -0.401 4.401 22 H 0.096 0.904 23 C -0.164 4.164 24 N -0.539 5.539 25 Si 0.706 3.294 26 H -0.211 1.211 27 H -0.228 1.228 28 H -0.194 1.194 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.234 0.766 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.078 0.922 43 H 0.059 0.941 44 H 0.073 0.927 45 H 0.025 0.975 46 H 0.063 0.937 47 H 0.045 0.955 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -8.652 -2.881 -26.271 27.809 hybrid contribution 0.376 -0.383 -0.169 0.563 sum -8.276 -3.264 -26.440 27.896 Atomic orbital electron populations 1.22234 0.93439 1.03925 1.03183 1.21932 0.95157 0.96418 0.85658 0.89433 1.88144 1.86559 1.33635 1.18449 1.21409 0.99966 0.91654 0.84623 1.19614 0.93544 1.00666 0.96106 1.20989 0.95178 0.96180 0.95981 1.21172 1.00267 1.00228 0.95827 1.17790 0.92817 0.94599 0.86428 1.91508 1.89894 1.75245 1.55215 1.21138 0.93848 1.02262 1.00437 1.20924 1.00041 0.94763 0.92877 1.20315 0.80239 0.85781 0.84301 1.90731 1.39334 1.23173 1.86431 1.46043 1.57934 1.27926 1.05686 1.21492 0.99708 0.96090 0.83166 1.22386 1.01064 1.01303 0.93809 1.21036 0.98770 0.93098 0.85556 1.44036 1.19655 1.43590 1.26303 1.21082 0.87487 0.98397 0.95118 1.18778 0.87169 0.95583 1.38551 0.90448 1.25484 0.96297 0.96647 0.98020 1.69875 1.03300 1.29385 1.51347 0.86949 0.78114 0.87301 0.77054 1.21140 1.22823 1.19448 0.91266 0.91012 0.90681 0.91911 0.91882 0.84642 0.84450 0.84537 0.84779 0.76587 0.91790 0.91492 0.90509 0.92187 0.94106 0.92699 0.97544 0.93658 0.95495 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 9.48 37.16 0.35 -0.89 16 2 C 0.07 0.69 3.13 -27.89 -0.09 0.60 16 3 H 0.09 0.64 7.79 -51.93 -0.40 0.24 16 4 O -0.35 -4.04 9.51 -55.09 -0.52 -4.56 16 5 C 0.10 0.79 5.87 36.01 0.21 1.00 16 6 C -0.10 -0.85 5.51 -104.61 -0.58 -1.43 16 7 C -0.07 -0.56 9.70 -39.59 -0.38 -0.94 16 8 C -0.16 -1.33 10.03 -39.51 -0.40 -1.73 16 9 C 0.10 0.94 7.30 -39.42 -0.29 0.65 16 10 F -0.14 -1.37 17.27 2.25 0.04 -1.34 16 11 C -0.16 -1.24 10.03 -39.51 -0.40 -1.64 16 12 C -0.07 -0.52 9.70 -39.60 -0.38 -0.90 16 13 C 0.51 7.14 7.18 -10.99 -0.08 7.07 16 14 O -0.52 -9.86 16.51 -14.30 -0.24 -10.10 16 15 N -0.72 -9.23 5.52 -60.29 -0.33 -9.56 16 16 C 0.12 1.86 5.67 -4.04 -0.02 1.83 16 17 C -0.15 -2.47 5.65 -26.73 -0.15 -2.62 16 18 C 0.14 2.95 4.53 -4.05 -0.02 2.93 16 19 N -0.61 -14.25 2.47 -181.12 -0.45 -14.70 16 20 C 0.12 2.42 10.70 59.85 0.64 3.06 16 21 C -0.27 -7.48 9.88 -15.06 -0.15 -7.62 16 22 H 0.08 2.29 8.06 -52.48 -0.42 1.86 16 23 C 0.04 1.04 5.29 -17.43 -0.09 0.94 16 24 N -0.90 -26.97 13.97 55.49 0.78 -26.20 16 25 Si 0.88 22.19 25.10 -169.99 -4.27 17.92 16 26 H -0.28 -6.98 6.68 56.52 0.38 -6.60 16 27 H -0.30 -7.73 7.11 56.52 0.40 -7.32 16 28 H -0.27 -6.76 7.11 56.52 0.40 -6.35 16 29 H 0.07 0.37 7.87 -51.93 -0.41 -0.03 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.45 7.92 -51.93 -0.41 0.03 16 32 H 0.06 0.35 7.81 -51.93 -0.41 -0.06 16 33 H 0.06 0.42 8.03 -51.93 -0.42 0.00 16 34 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 0.81 8.06 -52.48 -0.42 0.38 16 37 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 38 H 0.40 3.90 8.25 -40.82 -0.34 3.57 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 44 H 0.06 1.27 3.38 -51.93 -0.18 1.10 16 45 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 46 H 0.04 0.86 8.00 -51.93 -0.42 0.44 16 47 H 0.03 0.44 8.10 -51.93 -0.42 0.02 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 403.57 15.07 6.08 6.08 Total: -1.00 -34.84 403.57 -8.36 -43.19 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.63 Total: -1.04 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -1.82 Total: 0.31 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: 0.00 Total: -50.46 kcal Atomic # 8 Polarization: -13.90 SS G_CDS: -0.76 Total: -14.66 kcal Atomic # 9 Polarization: -1.37 SS G_CDS: 0.04 Total: -1.34 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.27 Total: 17.92 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.84 -8.36 -43.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712986106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.230 kcal (2) G-P(sol) polarization free energy of solvation -34.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds