Wall clock time and date at job start Tue Mar 31 2020 21:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47066 * 2 1 4 4 O 1.42904 * 109.46650 * 240.00578 * 2 1 3 5 5 C 1.42897 * 113.99884 * 89.99992 * 4 2 1 6 6 C 1.50707 * 109.47371 * 179.97438 * 5 4 2 7 7 C 1.38251 * 119.97161 * 269.72984 * 6 5 4 8 8 C 1.38193 * 120.02110 * 179.72415 * 7 6 5 9 9 C 1.38467 * 119.97576 * 0.56621 * 8 7 6 10 10 F 1.35101 * 120.02647 * 179.68638 * 9 8 7 11 11 C 1.38459 * 119.94549 * 359.70410 * 9 8 7 12 12 C 1.38198 * 119.97591 * 0.02562 * 11 9 8 13 13 C 1.50694 * 109.47555 * 120.00843 * 2 1 3 14 14 O 1.21278 * 120.00296 * 114.99393 * 13 2 1 15 15 N 1.34779 * 119.99736 * 294.99618 * 13 2 1 16 16 C 1.46500 * 119.99999 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.47263 * 180.02562 * 16 15 13 18 18 C 1.52997 * 109.47244 * 180.02562 * 17 16 15 19 19 N 1.46495 * 109.47199 * 179.97438 * 18 17 16 20 20 C 1.46503 * 119.99998 * 90.00390 * 19 18 17 21 21 C 1.36935 * 120.00464 * 270.00071 * 19 18 17 22 22 H 1.08003 * 120.00269 * 142.03572 * 21 19 18 23 23 C 1.38817 * 119.99902 * 322.03574 * 21 19 18 24 24 N 1.31616 * 120.00109 * 157.01776 * 23 21 19 25 25 Si 1.86794 * 119.99896 * 337.02243 * 23 21 19 26 26 H 1.48504 * 109.47307 * 95.67830 * 25 23 21 27 27 H 1.48499 * 109.47143 * 215.67884 * 25 23 21 28 28 H 1.48505 * 109.47301 * 335.67902 * 25 23 21 29 29 H 1.08999 * 109.47407 * 59.99444 * 1 2 3 30 30 H 1.08999 * 109.47334 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46898 * 299.99610 * 1 2 3 32 32 H 1.09000 * 109.47626 * 300.00059 * 5 4 2 33 33 H 1.09002 * 109.47410 * 59.99811 * 5 4 2 34 34 H 1.07995 * 119.98731 * 359.97438 * 7 6 5 35 35 H 1.08001 * 120.01620 * 180.24941 * 8 7 6 36 36 H 1.08003 * 120.01060 * 179.97438 * 11 9 8 37 37 H 1.08004 * 119.98661 * 179.97438 * 12 11 9 38 38 H 0.96993 * 120.00218 * 0.02562 * 15 13 2 39 39 H 1.09004 * 109.47399 * 300.00428 * 16 15 13 40 40 H 1.09006 * 109.47115 * 60.00491 * 16 15 13 41 41 H 1.09002 * 109.46644 * 300.00137 * 17 16 15 42 42 H 1.08997 * 109.47388 * 60.00060 * 17 16 15 43 43 H 1.09004 * 109.47189 * 300.00086 * 18 17 16 44 44 H 1.09006 * 109.47343 * 60.00160 * 18 17 16 45 45 H 1.08999 * 109.47348 * 85.64322 * 20 19 18 46 46 H 1.08997 * 109.47288 * 205.65381 * 20 19 18 47 47 H 1.09005 * 109.46419 * 325.64660 * 20 19 18 48 48 H 0.97001 * 120.00292 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1669 5 6 2.1999 0.1831 -2.2941 6 6 2.7012 -0.6279 -3.4613 7 6 4.0600 -0.7949 -3.6534 8 6 4.5207 -1.5431 -4.7200 9 6 3.6210 -2.1158 -5.6032 10 9 4.0704 -2.8422 -6.6499 11 6 2.2605 -1.9431 -5.4129 12 6 1.8020 -1.1991 -4.3423 13 6 2.0324 -0.7105 1.2303 14 8 2.6530 -1.7468 1.1212 15 7 1.7921 -0.1944 2.4519 16 6 2.2800 -0.8854 3.6480 17 6 1.8749 -0.0956 4.8942 18 6 2.3850 -0.8170 6.1433 19 7 1.9977 -0.0604 7.3365 20 6 0.7199 -0.3382 7.9971 21 6 2.8299 0.9063 7.8345 22 1 2.4169 1.8195 8.2370 23 6 4.2044 0.7126 7.8219 24 7 5.0154 1.7486 7.8592 25 14 4.9031 -1.0183 7.7518 26 1 5.2116 -1.3710 6.3426 27 1 6.1459 -1.0837 8.5619 28 1 3.9071 -1.9766 8.2952 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.2537 0.6550 -2.5588 33 1 2.9318 0.9515 -2.0450 34 1 4.7616 -0.3439 -2.9673 35 1 5.5822 -1.6769 -4.8677 36 1 1.5579 -2.3889 -6.1013 37 1 0.7408 -1.0639 -4.1939 38 1 1.2954 0.6341 2.5392 39 1 1.8450 -1.8838 3.6937 40 1 3.3663 -0.9640 3.6045 41 1 2.3096 0.9029 4.8487 42 1 0.7886 -0.0174 4.9376 43 1 1.9507 -1.8157 6.1890 44 1 3.4714 -0.8948 6.0998 45 1 0.8457 -1.1616 8.7001 46 1 0.3877 0.5504 8.5339 47 1 -0.0245 -0.6099 7.2486 48 1 5.9759 1.6133 7.8501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001712986106.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:18:27 Heat of formation + Delta-G solvation = -103.364700 kcal Electronic energy + Delta-G solvation = -28055.968618 eV Core-core repulsion = 23832.375303 eV Total energy + Delta-G solvation = -4223.593315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.96285 -41.08258 -40.20166 -38.59269 -38.06889 -36.14169 -33.95249 -33.46472 -32.36923 -32.14877 -31.23498 -28.14255 -27.24376 -26.91630 -24.91295 -24.07054 -23.25107 -22.51103 -22.49696 -21.36022 -18.80666 -18.72485 -18.42985 -18.06178 -17.51543 -17.40506 -16.88175 -16.65347 -16.64243 -16.35002 -16.00021 -15.76622 -15.27395 -15.20602 -14.94611 -14.83646 -14.53668 -14.46029 -14.25956 -14.04033 -13.98580 -13.41963 -13.37767 -13.27395 -13.11118 -12.93722 -12.69876 -12.67483 -12.59005 -12.35735 -12.17324 -12.08561 -11.99989 -11.75227 -11.38620 -11.04625 -10.64572 -10.50995 -10.14044 -10.10843 -9.70488 -8.76327 -8.22246 -5.58855 -0.00411 0.23650 1.29364 1.39716 1.49718 1.56200 1.83820 2.40003 2.47750 3.01690 3.10602 3.23385 3.42498 3.63972 3.70104 3.82056 3.93262 3.97774 4.04969 4.10793 4.18181 4.20408 4.25270 4.39893 4.45990 4.52744 4.58282 4.72029 4.74977 4.77223 4.78789 4.85382 4.93006 4.95977 5.03919 5.10356 5.15713 5.19839 5.23727 5.25007 5.34763 5.44024 5.48386 5.85597 5.93911 6.05992 6.16239 6.56111 6.98943 7.21842 7.62992 8.05414 8.97280 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.018983 B = 0.001810 C = 0.001726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.662619 B =15462.635857 C =16219.422623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.074 3.926 3 H 0.118 0.882 4 O -0.382 6.382 5 C 0.096 3.904 6 C -0.111 4.111 7 C -0.079 4.079 8 C -0.165 4.165 9 C 0.082 3.918 10 F -0.149 7.149 11 C -0.160 4.160 12 C -0.069 4.069 13 C 0.504 3.496 14 O -0.579 6.579 15 N -0.710 5.710 16 C 0.128 3.872 17 C -0.125 4.125 18 C 0.133 3.867 19 N -0.626 5.626 20 C 0.122 3.878 21 C -0.257 4.257 22 H 0.046 0.954 23 C -0.017 4.017 24 N -0.944 5.944 25 Si 0.935 3.065 26 H -0.277 1.277 27 H -0.309 1.309 28 H -0.261 1.261 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.155 0.845 37 H 0.159 0.841 38 H 0.417 0.583 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.028 0.972 45 H 0.011 0.989 46 H 0.042 0.958 47 H 0.063 0.937 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.849 -2.147 -27.406 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.014 3.986 3 H 0.136 0.864 4 O -0.302 6.302 5 C 0.021 3.979 6 C -0.111 4.111 7 C -0.097 4.097 8 C -0.184 4.184 9 C 0.063 3.937 10 F -0.128 7.128 11 C -0.179 4.179 12 C -0.087 4.087 13 C 0.291 3.709 14 O -0.457 6.457 15 N -0.364 5.364 16 C 0.003 3.997 17 C -0.166 4.166 18 C 0.007 3.993 19 N -0.350 5.350 20 C -0.023 4.023 21 C -0.387 4.387 22 H 0.063 0.937 23 C -0.213 4.213 24 N -0.588 5.588 25 Si 0.764 3.236 26 H -0.204 1.204 27 H -0.238 1.238 28 H -0.186 1.186 29 H 0.114 0.886 30 H 0.073 0.927 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.159 0.841 35 H 0.164 0.836 36 H 0.172 0.828 37 H 0.176 0.824 38 H 0.255 0.745 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.105 0.895 43 H 0.085 0.915 44 H 0.046 0.954 45 H 0.030 0.970 46 H 0.061 0.939 47 H 0.082 0.918 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.237 -3.063 -27.484 29.850 hybrid contribution 1.076 -0.285 0.201 1.131 sum -10.161 -3.349 -27.283 29.306 Atomic orbital electron populations 1.22238 0.91106 1.03494 1.05333 1.22020 0.96672 0.96700 0.83243 0.86411 1.88101 1.86998 1.35497 1.19557 1.21616 1.01792 0.91248 0.83249 1.19887 0.93655 1.00914 0.96668 1.21186 0.95806 0.96500 0.96189 1.21348 1.00894 1.00267 0.95889 1.18059 0.93684 0.95318 0.86662 1.91481 1.90075 1.75567 1.55634 1.21410 0.93631 1.02014 1.00833 1.21230 1.01189 0.94018 0.92270 1.21205 0.78997 0.85166 0.85558 1.90703 1.41950 1.25836 1.87259 1.45866 1.57511 1.28275 1.04780 1.21195 0.98277 0.96398 0.83802 1.22085 1.02266 0.99536 0.92668 1.21147 0.97543 0.94506 0.86115 1.44196 1.20260 1.42996 1.27588 1.21215 0.86386 0.98515 0.96135 1.18692 0.87650 0.95403 1.36975 0.93666 1.26027 0.96835 0.99536 0.98946 1.69982 1.03440 1.31221 1.54140 0.85988 0.77098 0.83361 0.77134 1.20417 1.23759 1.18563 0.88642 0.92708 0.89022 0.88980 0.90851 0.84051 0.83582 0.82763 0.82385 0.74539 0.91369 0.94060 0.92640 0.89532 0.91550 0.95388 0.97038 0.93883 0.91833 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.80 9.48 71.98 0.68 -1.12 16 2 C 0.07 1.27 3.13 29.85 0.09 1.36 16 3 H 0.12 1.27 7.79 -2.39 -0.02 1.25 16 4 O -0.38 -8.08 9.51 -129.99 -1.24 -9.32 16 5 C 0.10 1.27 5.87 71.24 0.42 1.68 16 6 C -0.11 -1.74 5.51 -19.86 -0.11 -1.84 16 7 C -0.08 -1.31 9.70 22.26 0.22 -1.10 16 8 C -0.17 -2.82 10.03 22.31 0.22 -2.59 16 9 C 0.08 1.47 7.30 22.38 0.16 1.63 16 10 F -0.15 -2.94 17.27 44.97 0.78 -2.16 16 11 C -0.16 -2.33 10.03 22.31 0.22 -2.11 16 12 C -0.07 -0.92 9.70 22.26 0.22 -0.71 16 13 C 0.50 13.41 7.18 87.65 0.63 14.04 16 14 O -0.58 -21.86 16.51 15.97 0.26 -21.60 16 15 N -0.71 -16.69 5.52 -463.06 -2.55 -19.24 16 16 C 0.13 3.80 5.67 86.38 0.49 4.29 16 17 C -0.13 -3.99 5.65 30.59 0.17 -3.82 16 18 C 0.13 5.24 4.53 86.38 0.39 5.63 16 19 N -0.63 -28.09 2.47 -726.93 -1.79 -29.89 16 20 C 0.12 4.39 10.70 127.77 1.37 5.76 16 21 C -0.26 -14.17 9.88 84.04 0.83 -13.34 16 22 H 0.05 2.74 8.06 -2.91 -0.02 2.72 16 23 C -0.02 -0.95 5.29 84.86 0.45 -0.50 16 24 N -0.94 -58.09 13.97 21.65 0.30 -57.78 16 25 Si 0.93 46.32 25.10 68.60 1.72 48.04 16 26 H -0.28 -13.26 6.68 99.48 0.66 -12.59 16 27 H -0.31 -15.57 7.11 99.48 0.71 -14.87 16 28 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 29 H 0.09 0.58 7.87 -2.39 -0.02 0.56 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.70 7.92 -2.38 -0.02 0.68 16 32 H 0.09 0.64 7.81 -2.39 -0.02 0.63 16 33 H 0.07 0.79 8.03 -2.39 -0.02 0.77 16 34 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.15 2.05 8.06 -2.91 -0.02 2.03 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 38 H 0.42 6.86 8.25 -92.71 -0.77 6.10 16 39 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 40 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 43 H 0.07 2.28 8.07 -2.39 -0.02 2.27 16 44 H 0.03 1.27 3.38 -2.38 -0.01 1.26 16 45 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 46 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 47 H 0.06 1.83 8.10 -2.38 -0.02 1.81 16 48 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -78.08 403.57 4.09 -73.99 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.15 Total: 10.71 kcal Atomic # 6 Polarization: 0.79 SS G_CDS: 6.46 Total: 7.25 kcal Atomic # 7 Polarization: -102.87 SS G_CDS: -4.05 Total: -106.91 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.97 Total: -30.92 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.16 kcal Atomic # 14 Polarization: 46.32 SS G_CDS: 1.72 Total: 48.04 kcal Total: -78.08 4.09 -73.99 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001712986106.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.372 kcal (2) G-P(sol) polarization free energy of solvation -78.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds