Wall clock time and date at job start Tue Mar 31 2020 22:08:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30369 * 125.97108 * 2 1
4 4 N 1.39912 * 109.02439 * 180.27896 * 3 2 1
5 5 C 1.46501 * 125.74219 * 179.71118 * 4 3 2
6 6 C 1.34412 * 108.51344 * 359.71533 * 4 3 2
7 7 F 1.35099 * 126.34387 * 180.02562 * 6 4 3
8 8 C 1.38500 * 107.31152 * 359.97438 * 6 4 3
9 9 C 1.47167 * 126.45545 * 179.97438 * 8 6 4
10 10 O 1.21635 * 119.99959 * 90.02987 * 9 8 6
11 11 N 1.34778 * 120.00506 * 270.02496 * 9 8 6
12 12 C 1.46927 * 120.62679 * 0.02562 * 11 9 8
13 13 C 1.53185 * 108.77734 * 126.41061 * 12 11 9
14 14 C 1.53043 * 109.31177 * 54.63580 * 13 12 11
15 15 C 1.53043 * 109.53509 * 298.63281 * 14 13 12
16 16 H 1.09001 * 109.49993 * 301.38043 * 15 14 13
17 17 C 1.53000 * 109.49672 * 181.31550 * 15 14 13
18 18 N 1.46500 * 109.47138 * 175.00262 * 17 15 14
19 19 C 1.46502 * 119.99738 * 269.99941 * 18 17 15
20 20 C 1.36931 * 120.00387 * 90.00263 * 18 17 15
21 21 H 1.08004 * 119.99557 * 340.31586 * 20 18 17
22 22 C 1.38805 * 120.00303 * 160.59531 * 20 18 17
23 23 N 1.31619 * 120.00121 * 347.03105 * 22 20 18
24 24 Si 1.86805 * 119.99954 * 167.03447 * 22 20 18
25 25 H 1.48501 * 109.47256 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47046 * 119.99982 * 24 22 20
27 27 H 1.48496 * 109.47191 * 239.99799 * 24 22 20
28 28 C 1.46921 * 120.63396 * 180.02562 * 11 9 8
29 29 H 1.08999 * 109.47110 * 270.19186 * 1 2 3
30 30 H 1.08999 * 109.46832 * 30.19666 * 1 2 3
31 31 H 1.08996 * 109.47040 * 150.19226 * 1 2 3
32 32 H 1.09000 * 109.47508 * 270.00465 * 5 4 3
33 33 H 1.09002 * 109.47113 * 30.00627 * 5 4 3
34 34 H 1.09005 * 109.47012 * 150.00259 * 5 4 3
35 35 H 1.09000 * 109.58771 * 6.62260 * 12 11 9
36 36 H 1.09000 * 109.70082 * 246.27161 * 12 11 9
37 37 H 1.09004 * 109.50066 * 294.68476 * 13 12 11
38 38 H 1.08997 * 109.50124 * 174.58474 * 13 12 11
39 39 H 1.08998 * 109.46016 * 178.61755 * 14 13 12
40 40 H 1.09001 * 109.45242 * 58.64927 * 14 13 12
41 41 H 1.09007 * 109.47228 * 55.00045 * 17 15 14
42 42 H 1.08996 * 109.47592 * 295.00341 * 17 15 14
43 43 H 1.09002 * 109.46983 * 264.87711 * 19 18 17
44 44 H 1.08995 * 109.47334 * 24.87898 * 19 18 17
45 45 H 1.09004 * 109.47146 * 144.87640 * 19 18 17
46 46 H 0.97000 * 120.00050 * 180.02562 * 23 22 20
47 47 H 1.08996 * 109.58955 * 113.79855 * 28 11 9
48 48 H 1.09004 * 109.58417 * 353.36758 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2728 1.0551 0.0000
4 7 3.6112 0.6473 -0.0064
5 6 4.7763 1.5353 -0.0145
6 6 3.6479 -0.6963 -0.0041
7 9 4.7576 -1.4669 -0.0081
8 6 2.3375 -1.1445 0.0044
9 6 1.8931 -2.5474 0.0091
10 8 1.7152 -3.1255 1.0645
11 7 1.6830 -3.1918 -1.1558
12 6 1.8940 -2.5072 -2.4386
13 6 2.8483 -3.3461 -3.2942
14 6 2.2952 -4.7672 -3.4238
15 6 2.2000 -5.4077 -2.0371
16 1 3.1869 -5.4220 -1.5744
17 6 1.6780 -6.8397 -2.1708
18 7 1.6997 -7.4918 -0.8591
19 6 2.8906 -8.2273 -0.4264
20 6 0.6070 -7.4141 -0.0376
21 1 -0.1292 -6.6387 -0.1901
22 6 0.4483 -8.3283 0.9948
23 7 1.1942 -9.4120 1.0346
24 14 -0.8238 -8.0205 2.3276
25 1 -1.5271 -6.7413 2.0548
26 1 -1.8076 -9.1329 2.3393
27 1 -0.1486 -7.9429 3.6479
28 6 1.2388 -4.5922 -1.1672
29 1 -0.3633 0.0034 1.0276
30 1 -0.3633 0.8882 -0.5169
31 1 -0.3633 -0.8917 -0.5108
32 1 5.0598 1.7536 -1.0441
33 1 4.5287 2.4644 0.4990
34 1 5.6076 1.0486 0.4958
35 1 2.3309 -1.5245 -2.2608
36 1 0.9415 -2.3953 -2.9564
37 1 3.8290 -3.3793 -2.8194
38 1 2.9379 -2.8990 -4.2842
39 1 2.9599 -5.3596 -4.0525
40 1 1.3041 -4.7311 -3.8760
41 1 2.3117 -7.3943 -2.8629
42 1 0.6563 -6.8201 -2.5499
43 1 2.7686 -9.2852 -0.6588
44 1 3.7662 -7.8396 -0.9470
45 1 3.0230 -8.1043 0.6485
46 1 1.0830 -10.0510 1.7559
47 1 0.2319 -4.6528 -1.5801
48 1 1.2434 -4.9853 -0.1505
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001713899996.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:08:25
Heat of formation + Delta-G solvation = 27.065688 kcal
Electronic energy + Delta-G solvation = -31052.306398 eV
Core-core repulsion = 26866.661720 eV
Total energy + Delta-G solvation = -4185.644678 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-49.46773 -41.62339 -39.61043 -37.36667 -35.42045 -34.43736 -32.89108 -31.55375
-30.71941 -30.06150 -29.59407 -26.67080 -25.91767 -25.59007 -24.94579 -22.52185
-22.30163 -21.01006 -20.64135 -19.71627 -19.02995 -17.81147 -17.20814 -16.67562
-16.55792 -16.21493 -15.70508 -14.93262 -14.88191 -14.67632 -14.44779 -14.26442
-13.87270 -13.81243 -13.61922 -13.49045 -13.30651 -13.05929 -12.91397 -12.70835
-12.63949 -12.44939 -12.36132 -12.16463 -11.64791 -11.15976 -11.06388 -10.95573
-10.76730 -10.71426 -10.51339 -10.27062 -10.19815 -10.06234 -9.80057 -9.69469
-9.58455 -9.52901 -8.83408 -8.41068 -8.30100 -6.65563 -5.60240 -3.03597
1.14937 1.66620 2.06495 2.72546 3.31456 3.49216 3.57102 3.60022
3.62400 4.08268 4.50878 4.61601 4.67132 4.75664 4.82848 4.89705
4.95163 4.99799 5.09952 5.17590 5.41330 5.43525 5.46806 5.51955
5.57251 5.60246 5.65071 5.81129 5.87521 5.98158 6.10876 6.17605
6.17766 6.25544 6.36346 6.43787 6.53978 6.64626 6.82264 6.88584
6.95041 7.05482 7.12490 7.54471 7.69035 7.82789 7.93438 8.44859
8.49908 9.35743 10.00110 10.47042 11.44843
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.013486 B = 0.003655 C = 0.003318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2075.674074 B = 7659.113291 C = 8436.562561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.131 3.869
3 N -0.273 5.273
4 N -0.377 5.377
5 C 0.094 3.906
6 C 0.289 3.711
7 F -0.087 7.087
8 C -0.276 4.276
9 C 0.590 3.410
10 O -0.518 6.518
11 N -0.600 5.600
12 C 0.112 3.888
13 C -0.132 4.132
14 C -0.113 4.113
15 C -0.120 4.120
16 H 0.065 0.935
17 C 0.159 3.841
18 N -0.603 5.603
19 C 0.166 3.834
20 C -0.247 4.247
21 H 0.071 0.929
22 C 0.000 4.000
23 N -0.910 5.910
24 Si 0.900 3.100
25 H -0.277 1.277
26 H -0.293 1.293
27 H -0.290 1.290
28 C 0.122 3.878
29 H 0.088 0.912
30 H 0.082 0.918
31 H 0.083 0.917
32 H 0.083 0.917
33 H 0.099 0.901
34 H 0.091 0.909
35 H 0.072 0.928
36 H 0.068 0.932
37 H 0.062 0.938
38 H 0.068 0.932
39 H 0.061 0.939
40 H 0.061 0.939
41 H 0.039 0.961
42 H 0.047 0.953
43 H 0.027 0.973
44 H -0.007 1.007
45 H 0.045 0.955
46 H 0.250 0.750
47 H 0.061 0.939
48 H 0.116 0.884
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.478 22.451 -9.165 24.861
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.035 4.035
3 N -0.096 5.096
4 N -0.162 5.162
5 C -0.047 4.047
6 C 0.142 3.858
7 F -0.066 7.066
8 C -0.292 4.292
9 C 0.375 3.625
10 O -0.393 6.393
11 N -0.333 5.333
12 C -0.012 4.012
13 C -0.171 4.171
14 C -0.152 4.152
15 C -0.143 4.143
16 H 0.084 0.916
17 C 0.031 3.969
18 N -0.326 5.326
19 C 0.021 3.979
20 C -0.377 4.377
21 H 0.089 0.911
22 C -0.197 4.197
23 N -0.556 5.556
24 Si 0.730 3.270
25 H -0.202 1.202
26 H -0.220 1.220
27 H -0.217 1.217
28 C 0.001 3.999
29 H 0.106 0.894
30 H 0.100 0.900
31 H 0.102 0.898
32 H 0.101 0.899
33 H 0.118 0.882
34 H 0.109 0.891
35 H 0.090 0.910
36 H 0.086 0.914
37 H 0.081 0.919
38 H 0.087 0.913
39 H 0.080 0.920
40 H 0.080 0.920
41 H 0.057 0.943
42 H 0.066 0.934
43 H 0.045 0.955
44 H 0.012 0.988
45 H 0.064 0.936
46 H 0.060 0.940
47 H 0.079 0.921
48 H 0.134 0.866
Dipole moment (debyes) X Y Z Total
from point charges 5.594 23.290 -8.448 25.398
hybrid contribution 0.027 -0.789 0.744 1.085
sum 5.622 22.501 -7.703 24.438
Atomic orbital electron populations
1.20329 0.85141 1.04006 1.04210 1.22205 0.97220 0.87986 0.96132
1.77278 0.84124 1.21150 1.27033 1.48637 1.07240 1.02554 1.57793
1.22046 0.83735 0.94661 1.04223 1.17786 0.83467 0.81759 1.02793
1.91673 1.49610 1.71554 1.93778 1.19797 0.90300 0.96020 1.23123
1.17075 0.77668 0.83822 0.83930 1.90871 1.50641 1.67114 1.30629
1.48213 1.66465 1.13759 1.04886 1.21614 0.99466 0.95583 0.84504
1.21899 0.99182 0.96727 0.99261 1.21555 1.00904 0.94732 0.97964
1.22257 0.99976 0.98203 0.93836 0.91610 1.20699 0.98521 0.89563
0.88122 1.43929 1.13791 1.60917 1.13952 1.20776 0.84467 0.94640
0.98004 1.19236 1.00886 1.09144 1.08406 0.91088 1.24921 0.98908
0.95538 1.00345 1.70101 1.42289 1.10326 1.32913 0.86240 0.80945
0.77415 0.82383 1.20170 1.21982 1.21669 1.21913 0.96167 0.77247
1.04541 0.89360 0.89955 0.89778 0.89865 0.88201 0.89070 0.90954
0.91408 0.91877 0.91348 0.92003 0.91984 0.94298 0.93446 0.95473
0.98842 0.93637 0.93996 0.92077 0.86563
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.76 10.28 36.01 0.37 -0.39 16
2 C 0.13 1.64 7.26 -82.01 -0.60 1.05 16
3 N -0.27 -3.29 12.49 33.91 0.42 -2.87 16
4 N -0.38 -4.12 3.98 -67.94 -0.27 -4.39 16
5 C 0.09 0.56 11.43 59.85 0.68 1.24 16
6 C 0.29 3.82 8.59 -16.33 -0.14 3.68 16
7 F -0.09 -1.17 17.31 2.25 0.04 -1.13 16
8 C -0.28 -4.06 3.87 -104.97 -0.41 -4.46 16
9 C 0.59 10.54 7.24 -12.63 -0.09 10.45 16
10 O -0.52 -11.74 16.52 5.25 0.09 -11.65 16
11 N -0.60 -9.61 2.97 -174.16 -0.52 -10.13 16
12 C 0.11 1.34 6.34 -3.71 -0.02 1.31 16
13 C -0.13 -1.50 6.08 -26.61 -0.16 -1.67 16
14 C -0.11 -1.48 5.17 -26.69 -0.14 -1.61 16
15 C -0.12 -2.09 2.54 -90.52 -0.23 -2.32 16
16 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
17 C 0.16 3.20 5.15 -4.04 -0.02 3.18 16
18 N -0.60 -15.27 2.82 -181.12 -0.51 -15.78 16
19 C 0.17 4.24 8.96 59.85 0.54 4.78 16
20 C -0.25 -6.84 8.22 -15.06 -0.12 -6.97 16
21 H 0.07 1.91 6.93 -52.48 -0.36 1.55 16
22 C 0.00 0.01 5.11 -17.43 -0.09 -0.08 16
23 N -0.91 -27.32 10.50 55.49 0.58 -26.74 16
24 Si 0.90 22.99 29.57 -169.99 -5.03 17.96 16
25 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16
26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16
27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16
28 C 0.12 2.26 4.68 -3.73 -0.02 2.24 16
29 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16
30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16
31 H 0.08 0.83 8.01 -51.93 -0.42 0.42 16
32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16
33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16
34 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16
35 H 0.07 0.82 6.25 -51.93 -0.32 0.49 16
36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16
38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16
39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16
41 H 0.04 0.74 8.07 -51.92 -0.42 0.32 16
42 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16
43 H 0.03 0.74 7.43 -51.93 -0.39 0.35 16
44 H -0.01 -0.16 8.03 -51.93 -0.42 -0.58 16
45 H 0.04 1.27 7.09 -51.93 -0.37 0.90 16
46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16
47 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16
48 H 0.12 2.72 5.45 -51.93 -0.28 2.43 16
LS Contribution 389.72 15.07 5.87 5.87
Total: -1.00 -34.80 389.72 -7.37 -42.17
By element:
Atomic # 1 Polarization: 3.87 SS G_CDS: -7.60 Total: -3.73 kcal
Atomic # 6 Polarization: 10.87 SS G_CDS: -0.45 Total: 10.43 kcal
Atomic # 7 Polarization: -59.62 SS G_CDS: -0.29 Total: -59.91 kcal
Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal
Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal
Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal
Total LS contribution 5.87 Total: 5.87 kcal
Total: -34.80 -7.37 -42.17 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713899996.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.234 kcal
(2) G-P(sol) polarization free energy of solvation -34.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.438 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.169 kcal
(6) G-S(sol) free energy of system = (1) + (5) 27.066 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds