Wall clock time and date at job start Tue Mar 31 2020 22:08:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30369 * 125.97108 * 2 1
4 4 N 1.39912 * 109.02439 * 180.27896 * 3 2 1
5 5 C 1.46501 * 125.74219 * 179.71118 * 4 3 2
6 6 C 1.34412 * 108.51344 * 359.71533 * 4 3 2
7 7 F 1.35099 * 126.34387 * 180.02562 * 6 4 3
8 8 C 1.38500 * 107.31152 * 359.97438 * 6 4 3
9 9 C 1.47167 * 126.45545 * 179.97438 * 8 6 4
10 10 O 1.21635 * 119.99959 * 90.02987 * 9 8 6
11 11 N 1.34778 * 120.00506 * 270.02496 * 9 8 6
12 12 C 1.46927 * 120.62679 * 0.02562 * 11 9 8
13 13 C 1.53185 * 108.77734 * 126.41061 * 12 11 9
14 14 C 1.53043 * 109.31177 * 54.63580 * 13 12 11
15 15 C 1.53043 * 109.53509 * 298.63281 * 14 13 12
16 16 H 1.09001 * 109.49993 * 301.38043 * 15 14 13
17 17 C 1.53000 * 109.49672 * 181.31550 * 15 14 13
18 18 N 1.46500 * 109.47138 * 175.00262 * 17 15 14
19 19 C 1.46502 * 119.99738 * 269.99941 * 18 17 15
20 20 C 1.36931 * 120.00387 * 90.00263 * 18 17 15
21 21 H 1.08004 * 119.99557 * 340.31586 * 20 18 17
22 22 C 1.38805 * 120.00303 * 160.59531 * 20 18 17
23 23 N 1.31619 * 120.00121 * 347.03105 * 22 20 18
24 24 Si 1.86805 * 119.99954 * 167.03447 * 22 20 18
25 25 H 1.48501 * 109.47256 * 0.02562 * 24 22 20
26 26 H 1.48503 * 109.47046 * 119.99982 * 24 22 20
27 27 H 1.48496 * 109.47191 * 239.99799 * 24 22 20
28 28 C 1.46921 * 120.63396 * 180.02562 * 11 9 8
29 29 H 1.08999 * 109.47110 * 270.19186 * 1 2 3
30 30 H 1.08999 * 109.46832 * 30.19666 * 1 2 3
31 31 H 1.08996 * 109.47040 * 150.19226 * 1 2 3
32 32 H 1.09000 * 109.47508 * 270.00465 * 5 4 3
33 33 H 1.09002 * 109.47113 * 30.00627 * 5 4 3
34 34 H 1.09005 * 109.47012 * 150.00259 * 5 4 3
35 35 H 1.09000 * 109.58771 * 6.62260 * 12 11 9
36 36 H 1.09000 * 109.70082 * 246.27161 * 12 11 9
37 37 H 1.09004 * 109.50066 * 294.68476 * 13 12 11
38 38 H 1.08997 * 109.50124 * 174.58474 * 13 12 11
39 39 H 1.08998 * 109.46016 * 178.61755 * 14 13 12
40 40 H 1.09001 * 109.45242 * 58.64927 * 14 13 12
41 41 H 1.09007 * 109.47228 * 55.00045 * 17 15 14
42 42 H 1.08996 * 109.47592 * 295.00341 * 17 15 14
43 43 H 1.09002 * 109.46983 * 264.87711 * 19 18 17
44 44 H 1.08995 * 109.47334 * 24.87898 * 19 18 17
45 45 H 1.09004 * 109.47146 * 144.87640 * 19 18 17
46 46 H 0.97000 * 120.00050 * 180.02562 * 23 22 20
47 47 H 1.08996 * 109.58955 * 113.79855 * 28 11 9
48 48 H 1.09004 * 109.58417 * 353.36758 * 28 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2728 1.0551 0.0000
4 7 3.6112 0.6473 -0.0064
5 6 4.7763 1.5353 -0.0145
6 6 3.6479 -0.6963 -0.0041
7 9 4.7576 -1.4669 -0.0081
8 6 2.3375 -1.1445 0.0044
9 6 1.8931 -2.5474 0.0091
10 8 1.7152 -3.1255 1.0645
11 7 1.6830 -3.1918 -1.1558
12 6 1.8940 -2.5072 -2.4386
13 6 2.8483 -3.3461 -3.2942
14 6 2.2952 -4.7672 -3.4238
15 6 2.2000 -5.4077 -2.0371
16 1 3.1869 -5.4220 -1.5744
17 6 1.6780 -6.8397 -2.1708
18 7 1.6997 -7.4918 -0.8591
19 6 2.8906 -8.2273 -0.4264
20 6 0.6070 -7.4141 -0.0376
21 1 -0.1292 -6.6387 -0.1901
22 6 0.4483 -8.3283 0.9948
23 7 1.1942 -9.4120 1.0346
24 14 -0.8238 -8.0205 2.3276
25 1 -1.5271 -6.7413 2.0548
26 1 -1.8076 -9.1329 2.3393
27 1 -0.1486 -7.9429 3.6479
28 6 1.2388 -4.5922 -1.1672
29 1 -0.3633 0.0034 1.0276
30 1 -0.3633 0.8882 -0.5169
31 1 -0.3633 -0.8917 -0.5108
32 1 5.0598 1.7536 -1.0441
33 1 4.5287 2.4644 0.4990
34 1 5.6076 1.0486 0.4958
35 1 2.3309 -1.5245 -2.2608
36 1 0.9415 -2.3953 -2.9564
37 1 3.8290 -3.3793 -2.8194
38 1 2.9379 -2.8990 -4.2842
39 1 2.9599 -5.3596 -4.0525
40 1 1.3041 -4.7311 -3.8760
41 1 2.3117 -7.3943 -2.8629
42 1 0.6563 -6.8201 -2.5499
43 1 2.7686 -9.2852 -0.6588
44 1 3.7662 -7.8396 -0.9470
45 1 3.0230 -8.1043 0.6485
46 1 1.0830 -10.0510 1.7559
47 1 0.2319 -4.6528 -1.5801
48 1 1.2434 -4.9853 -0.1505
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001713899996.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:08:24
Heat of formation + Delta-G solvation = 4.691566 kcal
Electronic energy + Delta-G solvation = -31053.276612 eV
Core-core repulsion = 26866.661720 eV
Total energy + Delta-G solvation = -4186.614892 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.186 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-50.50371 -42.59678 -40.90702 -38.83460 -37.19731 -35.29480 -34.41679 -33.09116
-31.98733 -31.35655 -30.47952 -27.98151 -27.78557 -27.05819 -26.06412 -24.05774
-23.37312 -22.32584 -21.82918 -21.07269 -20.24012 -18.94905 -18.55765 -18.20570
-17.70566 -17.19840 -17.10530 -16.87841 -15.99099 -15.79110 -15.77550 -15.43905
-15.29758 -14.97137 -14.85752 -14.69068 -14.50222 -14.30874 -14.06285 -13.91556
-13.78832 -13.64659 -13.36494 -13.30400 -13.06323 -12.80818 -12.79278 -12.58355
-12.32290 -12.07645 -12.03783 -11.99570 -11.84378 -11.69484 -11.57330 -11.21473
-11.08056 -10.58142 -10.44756 -9.85774 -9.62953 -8.74977 -7.79307 -5.22825
0.16741 0.83382 1.07766 1.39958 1.41442 1.46306 1.54674 2.06942
2.52033 2.70929 3.19356 3.34611 3.63781 3.70094 3.74137 3.90991
4.00242 4.08203 4.12391 4.20857 4.22099 4.29799 4.40316 4.54530
4.57296 4.64295 4.67344 4.73164 4.82570 4.84603 4.85632 4.87676
4.92436 5.01550 5.05551 5.17602 5.24186 5.27251 5.39071 5.45268
5.56754 5.58542 5.61352 5.67206 5.74117 6.19933 6.35423 6.39740
7.10504 7.19168 7.92545 8.34386 9.24642
Molecular weight = 338.19amu
Principal moments of inertia in cm(-1)
A = 0.013486 B = 0.003655 C = 0.003318
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2075.674074 B = 7659.113291 C = 8436.562561
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.131 3.869
3 N -0.273 5.273
4 N -0.364 5.364
5 C 0.081 3.919
6 C 0.286 3.714
7 F -0.092 7.092
8 C -0.301 4.301
9 C 0.588 3.412
10 O -0.583 6.583
11 N -0.595 5.595
12 C 0.107 3.893
13 C -0.126 4.126
14 C -0.106 4.106
15 C -0.107 4.107
16 H 0.040 0.960
17 C 0.156 3.844
18 N -0.620 5.620
19 C 0.181 3.819
20 C -0.239 4.239
21 H 0.074 0.926
22 C -0.058 4.058
23 N -0.942 5.942
24 Si 0.954 3.046
25 H -0.270 1.270
26 H -0.286 1.286
27 H -0.300 1.300
28 C 0.128 3.872
29 H 0.088 0.912
30 H 0.108 0.892
31 H 0.079 0.921
32 H 0.107 0.893
33 H 0.116 0.884
34 H 0.103 0.897
35 H 0.083 0.917
36 H 0.093 0.907
37 H 0.050 0.950
38 H 0.107 0.893
39 H 0.077 0.923
40 H 0.079 0.921
41 H 0.056 0.944
42 H 0.053 0.947
43 H 0.006 0.994
44 H 0.023 0.977
45 H 0.010 0.990
46 H 0.244 0.756
47 H 0.070 0.930
48 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.598 25.568 -11.912 28.757
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.035 4.035
3 N -0.097 5.097
4 N -0.149 5.149
5 C -0.058 4.058
6 C 0.137 3.863
7 F -0.071 7.071
8 C -0.317 4.317
9 C 0.375 3.625
10 O -0.462 6.462
11 N -0.326 5.326
12 C -0.014 4.014
13 C -0.164 4.164
14 C -0.144 4.144
15 C -0.129 4.129
16 H 0.058 0.942
17 C 0.030 3.970
18 N -0.343 5.343
19 C 0.036 3.964
20 C -0.369 4.369
21 H 0.092 0.908
22 C -0.252 4.252
23 N -0.590 5.590
24 Si 0.783 3.217
25 H -0.195 1.195
26 H -0.213 1.213
27 H -0.228 1.228
28 C 0.006 3.994
29 H 0.106 0.894
30 H 0.127 0.873
31 H 0.098 0.902
32 H 0.125 0.875
33 H 0.135 0.865
34 H 0.122 0.878
35 H 0.101 0.899
36 H 0.111 0.889
37 H 0.069 0.931
38 H 0.126 0.874
39 H 0.095 0.905
40 H 0.098 0.902
41 H 0.074 0.926
42 H 0.072 0.928
43 H 0.024 0.976
44 H 0.042 0.958
45 H 0.028 0.972
46 H 0.054 0.946
47 H 0.088 0.912
48 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 5.724 26.479 -11.279 29.345
hybrid contribution 0.079 -1.642 1.525 2.242
sum 5.802 24.837 -9.754 27.307
Atomic orbital electron populations
1.20428 0.83614 1.05079 1.04548 1.22494 0.98227 0.87079 0.95711
1.77264 0.84584 1.20822 1.26981 1.49016 1.08009 1.02048 1.55813
1.22532 0.82401 0.94555 1.06279 1.17759 0.82903 0.82790 1.02857
1.91659 1.49690 1.71913 1.93819 1.19589 0.91606 0.94703 1.25842
1.17553 0.76605 0.84926 0.83386 1.90830 1.53612 1.68859 1.32924
1.48268 1.65240 1.12803 1.06271 1.21943 1.01168 0.95779 0.82515
1.21887 0.97981 0.95557 1.00957 1.21515 1.02566 0.95615 0.94680
1.22003 0.97781 0.96577 0.96507 0.94151 1.20944 0.99494 0.90719
0.85853 1.44172 1.13014 1.61233 1.15859 1.20473 0.85954 0.93772
0.96184 1.19520 1.00950 1.08114 1.08349 0.90812 1.25589 1.01189
0.95917 1.02520 1.70238 1.44132 1.11204 1.33443 0.85382 0.79120
0.77532 0.79639 1.19486 1.21326 1.22779 1.21587 0.97184 0.78986
1.01682 0.89388 0.87313 0.90187 0.87484 0.86526 0.87821 0.89852
0.88907 0.93143 0.87425 0.90479 0.90219 0.92596 0.92840 0.97608
0.95813 0.97160 0.94626 0.91205 0.91984
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.41 10.28 71.24 0.73 -0.68 16
2 C 0.13 3.10 7.26 43.56 0.32 3.41 16
3 N -0.27 -5.97 12.49 -46.64 -0.58 -6.56 16
4 N -0.36 -7.14 3.98 -368.85 -1.47 -8.61 16
5 C 0.08 0.71 11.43 127.77 1.46 2.17 16
6 C 0.29 7.25 8.59 84.36 0.72 7.98 16
7 F -0.09 -2.41 17.31 44.97 0.78 -1.63 16
8 C -0.30 -8.69 3.87 -20.09 -0.08 -8.77 16
9 C 0.59 21.51 7.24 86.59 0.63 22.13 16
10 O -0.58 -28.01 16.52 -4.14 -0.07 -28.08 16
11 N -0.59 -18.78 2.97 -823.16 -2.45 -21.23 16
12 C 0.11 2.25 6.34 86.36 0.55 2.80 16
13 C -0.13 -2.38 6.08 30.67 0.19 -2.19 16
14 C -0.11 -2.38 5.17 30.62 0.16 -2.22 16
15 C -0.11 -3.60 2.54 -10.73 -0.03 -3.63 16
16 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16
17 C 0.16 6.13 5.15 86.38 0.44 6.57 16
18 N -0.62 -31.94 2.82 -726.93 -2.05 -33.99 16
19 C 0.18 9.56 8.96 127.77 1.15 10.71 16
20 C -0.24 -13.56 8.22 84.03 0.69 -12.87 16
21 H 0.07 4.07 6.93 -2.91 -0.02 4.05 16
22 C -0.06 -3.46 5.11 84.86 0.43 -3.02 16
23 N -0.94 -58.66 10.50 21.65 0.23 -58.43 16
24 Si 0.95 48.87 29.57 68.60 2.03 50.90 16
25 H -0.27 -13.37 7.11 99.48 0.71 -12.67 16
26 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16
27 H -0.30 -15.76 7.11 99.48 0.71 -15.06 16
28 C 0.13 4.75 4.68 86.35 0.40 5.16 16
29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16
30 H 0.11 1.34 8.14 -2.39 -0.02 1.33 16
31 H 0.08 1.50 8.01 -2.39 -0.02 1.48 16
32 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16
33 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16
34 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16
35 H 0.08 1.63 6.25 -2.39 -0.01 1.61 16
36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16
37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16
38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16
39 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16
40 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16
41 H 0.06 2.01 8.07 -2.38 -0.02 1.99 16
42 H 0.05 2.04 8.04 -2.39 -0.02 2.02 16
43 H 0.01 0.32 7.43 -2.39 -0.02 0.30 16
44 H 0.02 1.07 8.03 -2.39 -0.02 1.05 16
45 H 0.01 0.57 7.09 -2.39 -0.02 0.55 16
46 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16
47 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16
48 H 0.06 3.04 5.45 -2.38 -0.01 3.02 16
Total: -1.00 -80.63 389.72 5.14 -75.49
By element:
Atomic # 1 Polarization: 3.63 SS G_CDS: 0.96 Total: 4.59 kcal
Atomic # 6 Polarization: 19.77 SS G_CDS: 7.77 Total: 27.54 kcal
Atomic # 7 Polarization: -122.49 SS G_CDS: -6.32 Total: -128.81 kcal
Atomic # 8 Polarization: -28.01 SS G_CDS: -0.07 Total: -28.08 kcal
Atomic # 9 Polarization: -2.41 SS G_CDS: 0.78 Total: -1.63 kcal
Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.90 kcal
Total: -80.63 5.14 -75.49 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001713899996.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 80.182 kcal
(2) G-P(sol) polarization free energy of solvation -80.630 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.448 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) 4.692 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds