Wall clock time and date at job start Tue Mar 31 2020 21:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35953 * 117.00287 * 2 1 4 4 C 1.38662 * 120.05796 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.96414 * 179.70399 * 4 3 2 6 6 C 1.38264 * 120.09821 * 0.55151 * 5 4 3 7 7 C 1.50696 * 119.93937 * 179.72755 * 6 5 4 8 8 C 1.53002 * 109.46919 * 269.72442 * 7 6 5 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00137 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99828 * 0.28058 * 11 9 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.08995 * 109.47304 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.46656 * 120.00305 * 13 11 9 16 16 C 1.52997 * 109.47021 * 240.00060 * 13 11 9 17 17 N 1.46500 * 109.47074 * 55.00351 * 16 13 11 18 18 C 1.36939 * 120.00107 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00151 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00292 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47466 * 59.99443 * 22 20 18 24 24 H 1.48499 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47012 * 299.99869 * 22 20 18 26 26 C 1.38266 * 120.12275 * 359.45090 * 6 5 4 27 27 C 1.38336 * 120.02766 * 0.27196 * 26 6 5 28 28 F 1.35101 * 120.04472 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.47058 * 300.00253 * 1 2 3 30 30 H 1.09002 * 109.47381 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47399 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.01941 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.95401 * 180.30252 * 5 4 3 34 34 H 1.09000 * 109.47319 * 149.73211 * 7 6 5 35 35 H 1.08987 * 109.47394 * 29.72365 * 7 6 5 36 36 H 1.09004 * 109.46930 * 60.00101 * 8 7 6 37 37 H 1.09000 * 109.47312 * 300.00045 * 8 7 6 38 38 H 1.08998 * 109.46661 * 269.71691 * 12 11 9 39 39 H 1.08993 * 109.47575 * 29.72405 * 12 11 9 40 40 H 1.09001 * 109.46870 * 149.72361 * 12 11 9 41 41 H 1.09005 * 109.47120 * 60.00270 * 15 13 11 42 42 H 1.09002 * 109.46792 * 180.02562 * 15 13 11 43 43 H 1.09002 * 109.47539 * 299.99969 * 15 13 11 44 44 H 1.09000 * 109.46864 * 175.00236 * 16 13 11 45 45 H 1.08999 * 109.47302 * 295.00236 * 16 13 11 46 46 H 0.96996 * 120.00303 * 0.02562 * 17 16 13 47 47 H 0.97004 * 120.00486 * 180.02562 * 21 20 18 48 48 H 1.07994 * 119.98579 * 180.25079 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3750 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6776 0.0009 7 6 3.9850 5.0211 0.0014 8 6 4.2159 5.4764 -1.4409 9 6 4.8980 6.8202 -1.4405 10 8 5.1729 7.3604 -0.3899 11 7 5.2035 7.4213 -2.6074 12 6 4.8669 6.7711 -3.8764 13 6 5.8661 8.7279 -2.6069 14 1 6.0302 9.0517 -1.5792 15 6 7.2113 8.6177 -3.3274 16 6 4.9830 9.7478 -3.3286 17 7 3.6544 9.7664 -2.7118 18 6 2.6878 10.6087 -3.1930 19 1 2.9049 11.2589 -4.0276 20 6 1.4291 10.6267 -2.6082 21 7 1.1643 9.8339 -1.5915 22 14 0.1103 11.7751 -3.2651 23 1 -0.1605 11.4546 -4.6896 24 1 -1.1347 11.6030 -2.4742 25 1 0.5776 13.1803 -3.1541 26 6 4.0580 2.5197 0.0003 27 6 3.4333 1.2854 -0.0002 28 9 4.1713 0.1538 -0.0013 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2137 2.3200 0.0005 33 1 1.3343 4.5114 0.0121 34 1 4.9432 4.9416 0.5150 35 1 3.3564 5.7479 0.5156 36 1 3.2578 5.5559 -1.9546 37 1 4.8447 4.7496 -1.9552 38 1 5.6999 6.1448 -4.1957 39 1 3.9782 6.1542 -3.7441 40 1 4.6725 7.5308 -4.6334 41 1 7.0475 8.2938 -4.3552 42 1 7.7045 9.5898 -3.3266 43 1 7.8405 7.8911 -2.8133 44 1 5.4334 10.7374 -3.2514 45 1 4.8922 9.4710 -4.3789 46 1 3.4595 9.1827 -1.9620 47 1 0.2846 9.8462 -1.1830 48 1 5.1363 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715343013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:54 Heat of formation + Delta-G solvation = -84.504060 kcal Electronic energy + Delta-G solvation = -29310.048965 eV Core-core repulsion = 25087.273509 eV Total energy + Delta-G solvation = -4222.775456 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.89554 -40.29704 -39.68392 -38.01668 -36.38107 -33.99675 -33.49456 -31.85544 -30.89890 -30.14722 -29.30620 -27.55860 -26.57662 -25.64102 -24.55271 -22.95350 -22.60069 -21.50644 -20.43753 -18.58696 -18.51103 -17.24731 -17.11051 -17.05112 -16.54426 -16.35619 -15.72233 -15.49087 -15.23037 -15.00343 -14.69665 -14.46582 -14.22482 -13.90098 -13.63720 -13.49834 -13.20547 -12.97483 -12.70605 -12.52185 -12.34307 -12.30166 -12.25566 -12.11859 -11.94074 -11.79142 -11.58193 -11.41716 -11.28674 -11.06339 -10.87366 -10.83906 -10.75784 -10.43967 -10.07542 -9.69491 -9.36570 -9.09918 -8.86424 -8.26605 -8.21309 -6.89616 -5.73739 -3.02682 0.96035 1.04719 2.88446 3.06371 3.28757 3.43196 3.46786 3.48190 3.48956 4.04127 4.47320 4.55055 4.59777 4.72985 4.84196 4.93580 5.03033 5.07481 5.14829 5.19648 5.23244 5.31989 5.35664 5.41097 5.46029 5.56530 5.61845 5.67507 5.71541 5.74246 5.85249 5.95975 5.97955 6.04035 6.09454 6.13279 6.21228 6.23555 6.39242 6.46087 6.48490 6.53130 6.74802 7.02923 7.04020 7.69399 7.80048 8.44148 8.61102 9.55653 10.14637 10.50430 11.48334 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.002796 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.452865 B =10010.311154 C =11956.711540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.313 6.313 3 C 0.086 3.914 4 C -0.178 4.178 5 C -0.081 4.081 6 C -0.083 4.083 7 C -0.063 4.063 8 C -0.132 4.132 9 C 0.518 3.482 10 O -0.542 6.542 11 N -0.598 5.598 12 C 0.082 3.918 13 C 0.125 3.875 14 H 0.099 0.901 15 C -0.154 4.154 16 C 0.143 3.857 17 N -0.727 5.727 18 C -0.240 4.240 19 H 0.068 0.932 20 C -0.012 4.012 21 N -0.929 5.929 22 Si 0.906 3.094 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.287 1.287 26 C -0.113 4.113 27 C 0.067 3.933 28 F -0.136 7.136 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.066 0.934 43 H 0.054 0.946 44 H 0.027 0.973 45 H 0.020 0.980 46 H 0.386 0.614 47 H 0.254 0.746 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.425 -18.533 -0.007 19.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.227 6.227 3 C 0.040 3.960 4 C -0.197 4.197 5 C -0.099 4.099 6 C -0.083 4.083 7 C -0.101 4.101 8 C -0.171 4.171 9 C 0.306 3.694 10 O -0.419 6.419 11 N -0.331 5.331 12 C -0.061 4.061 13 C 0.021 3.979 14 H 0.117 0.883 15 C -0.212 4.212 16 C 0.014 3.986 17 N -0.372 5.372 18 C -0.372 4.372 19 H 0.086 0.914 20 C -0.209 4.209 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.132 4.132 27 C 0.047 3.953 28 F -0.114 7.114 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.119 0.881 32 H 0.155 0.845 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.073 0.927 44 H 0.045 0.955 45 H 0.038 0.962 46 H 0.221 0.779 47 H 0.064 0.936 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 4.586 -18.364 0.453 18.933 hybrid contribution -1.143 0.386 -0.328 1.250 sum 3.443 -17.977 0.125 18.304 Atomic orbital electron populations 1.23109 0.77956 1.04137 1.01662 1.86112 1.21700 1.25955 1.88915 1.18997 0.90807 0.85598 1.00560 1.21163 1.00342 0.91401 1.06767 1.21096 0.94140 0.97623 0.97044 1.19742 0.93365 0.94866 1.00329 1.20326 1.01542 0.92146 0.96055 1.21648 1.02311 0.94628 0.98560 1.20502 0.78428 0.87043 0.83406 1.90685 1.54099 1.66211 1.30936 1.47684 1.59400 1.20020 1.05991 1.21691 0.99737 0.98154 0.86546 1.21367 0.91462 0.82821 1.02216 0.88250 1.22044 0.96584 1.02093 1.00509 1.21002 0.87292 0.95134 0.95124 1.42289 1.07259 1.48368 1.39270 1.19167 0.91240 1.14797 1.11966 0.91400 1.24726 0.97732 0.99959 0.98438 1.69675 1.21770 1.41215 1.25117 0.86295 0.81474 0.80647 0.77895 1.21386 1.21725 1.21337 1.20932 1.01017 0.89655 1.01616 1.16931 0.85893 0.82907 1.09521 1.91486 1.76442 1.49119 1.94381 0.92401 0.92330 0.88077 0.84456 0.84366 0.90117 0.89253 0.88406 0.89346 0.93413 0.91260 0.90480 0.92475 0.91535 0.92728 0.95518 0.96228 0.77929 0.93578 0.84029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.31 -3.49 10.36 -19.59 -0.20 -3.69 16 3 C 0.09 1.00 6.69 -39.18 -0.26 0.74 16 4 C -0.18 -1.83 9.04 -39.45 -0.36 -2.19 16 5 C -0.08 -0.90 9.69 -39.59 -0.38 -1.28 16 6 C -0.08 -0.94 5.13 -104.60 -0.54 -1.48 16 7 C -0.06 -0.80 4.63 -27.88 -0.13 -0.93 16 8 C -0.13 -1.72 4.24 -27.88 -0.12 -1.83 16 9 C 0.52 8.86 7.38 -10.99 -0.08 8.78 16 10 O -0.54 -11.25 15.31 5.55 0.09 -11.17 16 11 N -0.60 -9.63 2.24 -173.94 -0.39 -10.02 16 12 C 0.08 1.06 9.32 59.85 0.56 1.62 16 13 C 0.12 2.12 2.80 -67.93 -0.19 1.93 16 14 H 0.10 1.94 6.90 -51.93 -0.36 1.58 16 15 C -0.15 -1.96 9.20 37.16 0.34 -1.62 16 16 C 0.14 2.86 5.50 -4.04 -0.02 2.84 16 17 N -0.73 -18.58 5.43 -59.91 -0.33 -18.91 16 18 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 16 19 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 20 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -28.08 13.06 55.49 0.72 -27.36 16 22 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 C -0.11 -1.25 9.67 -39.54 -0.38 -1.64 16 27 C 0.07 0.82 7.31 -39.30 -0.29 0.54 16 28 F -0.14 -1.79 17.11 2.25 0.04 -1.75 16 29 H 0.06 0.33 7.66 -51.93 -0.40 -0.06 16 30 H 0.06 0.34 7.66 -51.93 -0.40 -0.05 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.14 1.10 6.30 -52.49 -0.33 0.77 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 35 H 0.09 1.30 8.04 -51.94 -0.42 0.88 16 36 H 0.10 1.29 7.39 -51.93 -0.38 0.91 16 37 H 0.09 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.85 6.43 -51.93 -0.33 0.51 16 40 H 0.08 1.07 6.51 -51.93 -0.34 0.74 16 41 H 0.06 0.66 7.68 -51.93 -0.40 0.26 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.02 0.38 6.87 -51.93 -0.36 0.03 16 46 H 0.39 10.67 7.06 -40.82 -0.29 10.38 16 47 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 48 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 397.93 15.07 6.00 6.00 Total: -1.00 -34.32 397.93 -7.55 -41.86 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -7.35 Total: 8.40 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.11 Total: -0.69 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.01 Total: -56.29 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: -0.12 Total: -14.86 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.32 -7.55 -41.86 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715343013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.639 kcal (2) G-P(sol) polarization free energy of solvation -34.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds