Wall clock time and date at job start Tue Mar 31 2020 21:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35953 * 117.00287 * 2 1 4 4 C 1.38662 * 120.05796 * 0.02562 * 3 2 1 5 5 C 1.38182 * 119.96414 * 179.70399 * 4 3 2 6 6 C 1.38264 * 120.09821 * 0.55151 * 5 4 3 7 7 C 1.50696 * 119.93937 * 179.72755 * 6 5 4 8 8 C 1.53002 * 109.46919 * 269.72442 * 7 6 5 9 9 C 1.50696 * 109.47300 * 179.97438 * 8 7 6 10 10 O 1.21284 * 120.00109 * 0.02562 * 9 8 7 11 11 N 1.34777 * 120.00137 * 179.97438 * 9 8 7 12 12 C 1.46498 * 119.99828 * 0.28058 * 11 9 8 13 13 C 1.46506 * 119.99873 * 179.97438 * 11 9 8 14 14 H 1.08995 * 109.47304 * 0.02562 * 13 11 9 15 15 C 1.52998 * 109.46656 * 120.00305 * 13 11 9 16 16 C 1.52997 * 109.47021 * 240.00060 * 13 11 9 17 17 N 1.46500 * 109.47074 * 55.00351 * 16 13 11 18 18 C 1.36939 * 120.00107 * 179.97438 * 17 16 13 19 19 H 1.08003 * 119.99844 * 0.02562 * 18 17 16 20 20 C 1.38804 * 120.00151 * 180.02562 * 18 17 16 21 21 N 1.31620 * 120.00211 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00292 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47466 * 59.99443 * 22 20 18 24 24 H 1.48499 * 109.47440 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47012 * 299.99869 * 22 20 18 26 26 C 1.38266 * 120.12275 * 359.45090 * 6 5 4 27 27 C 1.38336 * 120.02766 * 0.27196 * 26 6 5 28 28 F 1.35101 * 120.04472 * 179.97438 * 27 26 6 29 29 H 1.09001 * 109.47058 * 300.00253 * 1 2 3 30 30 H 1.09002 * 109.47381 * 59.99800 * 1 2 3 31 31 H 1.09000 * 109.47399 * 180.02562 * 1 2 3 32 32 H 1.07995 * 120.01941 * 359.97438 * 4 3 2 33 33 H 1.08000 * 119.95401 * 180.30252 * 5 4 3 34 34 H 1.09000 * 109.47319 * 149.73211 * 7 6 5 35 35 H 1.08987 * 109.47394 * 29.72365 * 7 6 5 36 36 H 1.09004 * 109.46930 * 60.00101 * 8 7 6 37 37 H 1.09000 * 109.47312 * 300.00045 * 8 7 6 38 38 H 1.08998 * 109.46661 * 269.71691 * 12 11 9 39 39 H 1.08993 * 109.47575 * 29.72405 * 12 11 9 40 40 H 1.09001 * 109.46870 * 149.72361 * 12 11 9 41 41 H 1.09005 * 109.47120 * 60.00270 * 15 13 11 42 42 H 1.09002 * 109.46792 * 180.02562 * 15 13 11 43 43 H 1.09002 * 109.47539 * 299.99969 * 15 13 11 44 44 H 1.09000 * 109.46864 * 175.00236 * 16 13 11 45 45 H 1.08999 * 109.47302 * 295.00236 * 16 13 11 46 46 H 0.96996 * 120.00303 * 0.02562 * 17 16 13 47 47 H 0.97004 * 120.00486 * 180.02562 * 21 20 18 48 48 H 1.07994 * 119.98579 * 180.25079 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2923 2.3750 0.0005 5 6 1.9217 3.6052 0.0067 6 6 3.3024 3.6776 0.0009 7 6 3.9850 5.0211 0.0014 8 6 4.2159 5.4764 -1.4409 9 6 4.8980 6.8202 -1.4405 10 8 5.1729 7.3604 -0.3899 11 7 5.2035 7.4213 -2.6074 12 6 4.8669 6.7711 -3.8764 13 6 5.8661 8.7279 -2.6069 14 1 6.0302 9.0517 -1.5792 15 6 7.2113 8.6177 -3.3274 16 6 4.9830 9.7478 -3.3286 17 7 3.6544 9.7664 -2.7118 18 6 2.6878 10.6087 -3.1930 19 1 2.9049 11.2589 -4.0276 20 6 1.4291 10.6267 -2.6082 21 7 1.1643 9.8339 -1.5915 22 14 0.1103 11.7751 -3.2651 23 1 -0.1605 11.4546 -4.6896 24 1 -1.1347 11.6030 -2.4742 25 1 0.5776 13.1803 -3.1541 26 6 4.0580 2.5197 0.0003 27 6 3.4333 1.2854 -0.0002 28 9 4.1713 0.1538 -0.0013 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 0.2137 2.3200 0.0005 33 1 1.3343 4.5114 0.0121 34 1 4.9432 4.9416 0.5150 35 1 3.3564 5.7479 0.5156 36 1 3.2578 5.5559 -1.9546 37 1 4.8447 4.7496 -1.9552 38 1 5.6999 6.1448 -4.1957 39 1 3.9782 6.1542 -3.7441 40 1 4.6725 7.5308 -4.6334 41 1 7.0475 8.2938 -4.3552 42 1 7.7045 9.5898 -3.3266 43 1 7.8405 7.8911 -2.8133 44 1 5.4334 10.7374 -3.2514 45 1 4.8922 9.4710 -4.3789 46 1 3.4595 9.1827 -1.9620 47 1 0.2846 9.8462 -1.1830 48 1 5.1363 2.5789 -0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715343013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:53 Heat of formation + Delta-G solvation = -105.304417 kcal Electronic energy + Delta-G solvation = -29310.950936 eV Core-core repulsion = 25087.273509 eV Total energy + Delta-G solvation = -4223.677427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.84069 -41.23326 -40.86882 -38.88469 -37.82192 -35.79117 -34.61168 -33.40407 -31.85191 -31.73849 -30.22386 -28.25129 -27.70082 -27.36659 -25.61421 -24.42593 -23.79138 -22.58684 -21.65612 -19.92056 -19.31315 -19.07929 -18.35888 -17.98072 -17.59778 -17.18798 -17.05936 -16.74655 -16.54594 -16.05162 -15.81244 -15.47130 -15.35493 -15.18287 -15.06584 -14.86694 -14.57802 -13.99623 -13.85317 -13.71570 -13.66394 -13.40816 -13.26289 -13.22876 -13.06574 -12.88785 -12.78051 -12.73241 -12.49764 -12.41044 -12.16779 -12.13955 -11.90273 -11.86691 -11.77621 -11.70955 -10.95130 -10.69215 -9.95884 -9.49946 -9.14213 -8.97559 -7.91485 -5.21170 0.09714 0.17451 1.46836 1.50013 1.56019 1.75407 2.14774 2.19175 2.52075 2.56939 3.17234 3.40765 3.52031 3.70418 3.81603 3.93939 4.02180 4.12746 4.19045 4.25766 4.28321 4.32728 4.36665 4.37857 4.40645 4.50661 4.51454 4.66116 4.71450 4.75847 4.81867 4.87011 4.88511 4.89770 4.96416 5.06485 5.08008 5.16377 5.18293 5.20749 5.33616 5.49239 5.55793 5.63172 5.73105 6.26570 6.28410 6.54425 7.31022 7.35339 8.11285 8.35229 9.31130 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.010848 B = 0.002796 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2580.452865 B =10010.311154 C =11956.711540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.333 6.333 3 C 0.083 3.917 4 C -0.174 4.174 5 C -0.086 4.086 6 C -0.086 4.086 7 C -0.055 4.055 8 C -0.121 4.121 9 C 0.506 3.494 10 O -0.590 6.590 11 N -0.600 5.600 12 C 0.078 3.922 13 C 0.128 3.872 14 H 0.066 0.934 15 C -0.141 4.141 16 C 0.141 3.859 17 N -0.741 5.741 18 C -0.246 4.246 19 H 0.076 0.924 20 C -0.073 4.073 21 N -0.966 5.966 22 Si 0.973 3.027 23 H -0.275 1.275 24 H -0.296 1.296 25 H -0.282 1.282 26 C -0.106 4.106 27 C 0.046 3.954 28 F -0.145 7.145 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.121 0.879 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.080 0.920 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.063 0.937 44 H 0.026 0.974 45 H 0.037 0.963 46 H 0.372 0.628 47 H 0.250 0.750 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.457 -19.371 -1.866 19.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.247 6.247 3 C 0.037 3.963 4 C -0.192 4.192 5 C -0.104 4.104 6 C -0.087 4.087 7 C -0.092 4.092 8 C -0.161 4.161 9 C 0.296 3.704 10 O -0.471 6.471 11 N -0.332 5.332 12 C -0.064 4.064 13 C 0.024 3.976 14 H 0.084 0.916 15 C -0.199 4.199 16 C 0.014 3.986 17 N -0.383 5.383 18 C -0.378 4.378 19 H 0.094 0.906 20 C -0.266 4.266 21 N -0.616 5.616 22 Si 0.802 3.198 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.208 1.208 26 C -0.125 4.125 27 C 0.026 3.974 28 F -0.123 7.123 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.139 0.861 32 H 0.178 0.822 33 H 0.156 0.844 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.116 0.884 37 H 0.140 0.860 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.044 0.956 45 H 0.054 0.946 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 4.646 -19.203 -1.473 19.812 hybrid contribution -1.143 0.645 0.230 1.332 sum 3.503 -18.558 -1.244 18.927 Atomic orbital electron populations 1.23424 0.75809 1.05886 1.02653 1.86095 1.23998 1.25836 1.88756 1.19158 0.90846 0.86245 1.00084 1.21346 1.01467 0.90501 1.05893 1.21210 0.94171 0.98103 0.96940 1.19576 0.93516 0.94168 1.01408 1.20169 1.01128 0.92236 0.95715 1.21643 1.02300 0.93044 0.99083 1.21241 0.77963 0.88220 0.82978 1.90656 1.56120 1.67668 1.32631 1.47844 1.58810 1.19554 1.06980 1.21912 1.01649 0.98224 0.84659 1.21230 0.93099 0.82738 1.00493 0.91597 1.21945 0.93830 1.03188 1.00945 1.21201 0.85371 0.96209 0.95835 1.42490 1.08978 1.47766 1.39110 1.19589 0.91883 1.14638 1.11702 0.90644 1.25552 1.00057 1.01906 0.99065 1.69850 1.21923 1.43139 1.26691 0.85224 0.78338 0.78632 0.77586 1.20078 1.22267 1.20834 1.21013 1.01786 0.88994 1.00697 1.17176 0.86416 0.82961 1.10802 1.91456 1.76698 1.49597 1.94597 0.91352 0.91315 0.86114 0.82155 0.84365 0.90105 0.91880 0.88448 0.86048 0.89661 0.90645 0.91380 0.90539 0.90469 0.91816 0.95586 0.94559 0.79574 0.94164 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -7.03 10.36 -93.02 -0.96 -7.99 16 3 C 0.08 1.85 6.69 22.53 0.15 2.00 16 4 C -0.17 -3.36 9.04 22.36 0.20 -3.16 16 5 C -0.09 -1.86 9.69 22.26 0.22 -1.65 16 6 C -0.09 -1.93 5.13 -19.85 -0.10 -2.03 16 7 C -0.05 -1.41 4.63 29.85 0.14 -1.27 16 8 C -0.12 -3.08 4.24 29.85 0.13 -2.96 16 9 C 0.51 17.46 7.38 87.66 0.65 18.10 16 10 O -0.59 -25.56 15.31 -3.04 -0.05 -25.60 16 11 N -0.60 -18.88 2.24 -822.61 -1.85 -20.72 16 12 C 0.08 1.83 9.32 127.77 1.19 3.02 16 13 C 0.13 4.31 2.80 44.99 0.13 4.43 16 14 H 0.07 2.67 6.90 -2.39 -0.02 2.65 16 15 C -0.14 -3.27 9.20 71.98 0.66 -2.61 16 16 C 0.14 5.58 5.50 86.38 0.47 6.05 16 17 N -0.74 -38.27 5.43 -343.46 -1.87 -40.13 16 18 C -0.25 -13.80 9.99 84.03 0.84 -12.96 16 19 H 0.08 4.02 7.83 -2.91 -0.02 4.00 16 20 C -0.07 -4.22 5.50 84.86 0.47 -3.76 16 21 N -0.97 -59.52 13.06 21.65 0.28 -59.24 16 22 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 23 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 C -0.11 -2.25 9.67 22.30 0.22 -2.03 16 27 C 0.05 1.10 7.31 22.45 0.16 1.26 16 28 F -0.14 -3.75 17.11 44.97 0.77 -2.98 16 29 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 30 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 31 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.16 2.25 6.30 -2.91 -0.02 2.23 16 33 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 34 H 0.08 2.05 8.04 -2.39 -0.02 2.03 16 35 H 0.06 1.94 8.04 -2.39 -0.02 1.92 16 36 H 0.10 2.52 7.39 -2.38 -0.02 2.50 16 37 H 0.12 2.26 8.11 -2.39 -0.02 2.25 16 38 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.07 1.69 6.43 -2.39 -0.02 1.68 16 40 H 0.07 1.74 6.51 -2.39 -0.02 1.73 16 41 H 0.08 1.50 7.68 -2.38 -0.02 1.48 16 42 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.04 1.34 6.87 -2.39 -0.02 1.32 16 46 H 0.37 21.16 7.06 -92.71 -0.66 20.51 16 47 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 48 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -75.86 397.93 5.30 -70.56 By element: Atomic # 1 Polarization: 33.95 SS G_CDS: 0.32 Total: 34.27 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: 6.63 Total: 3.76 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -3.43 Total: -120.09 kcal Atomic # 8 Polarization: -32.58 SS G_CDS: -1.01 Total: -33.60 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.77 Total: -2.98 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Total: -75.86 5.30 -70.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715343013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.749 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds