Wall clock time and date at job start Tue Mar 31 2020 21:44:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36932 * 120.00128 * 2 1
4 4 H 1.08001 * 120.00373 * 200.35842 * 3 2 1
5 5 C 1.38815 * 119.99957 * 20.35671 * 3 2 1
6 6 N 1.31616 * 119.99795 * 14.99353 * 5 3 2
7 7 Si 1.86801 * 119.99905 * 194.98698 * 5 3 2
8 8 H 1.48497 * 109.46863 * 85.00732 * 7 5 3
9 9 H 1.48504 * 109.47199 * 205.00178 * 7 5 3
10 10 H 1.48494 * 109.47529 * 325.00413 * 7 5 3
11 11 C 1.46498 * 119.99986 * 179.97438 * 2 1 3
12 12 C 1.53001 * 109.47632 * 270.00472 * 11 2 1
13 13 N 1.46498 * 109.47632 * 179.97438 * 12 11 2
14 14 C 1.46505 * 119.99762 * 270.00395 * 13 12 11
15 15 C 1.34776 * 119.99872 * 89.99908 * 13 12 11
16 16 O 1.21273 * 120.00093 * 359.97438 * 15 13 12
17 17 C 1.50700 * 119.99746 * 180.02562 * 15 13 12
18 18 C 1.52996 * 109.47029 * 179.97438 * 17 15 13
19 19 C 1.52999 * 109.47043 * 179.97438 * 18 17 15
20 20 O 1.42907 * 109.47023 * 180.02562 * 19 18 17
21 21 C 1.35945 * 116.99939 * 180.02562 * 20 19 18
22 22 C 1.38707 * 120.03010 * 359.72265 * 21 20 19
23 23 C 1.38158 * 119.96787 * 179.79209 * 22 21 20
24 24 C 1.38449 * 120.02758 * 0.48664 * 23 22 21
25 25 F 1.35101 * 119.96799 * 179.72285 * 24 23 22
26 26 C 1.38455 * 120.06300 * 359.74298 * 24 23 22
27 27 C 1.38143 * 120.03128 * 0.02606 * 26 24 23
28 28 H 1.09004 * 109.47705 * 275.09931 * 1 2 3
29 29 H 1.08999 * 109.47032 * 35.10245 * 1 2 3
30 30 H 1.09000 * 109.47187 * 155.09583 * 1 2 3
31 31 H 0.97008 * 119.99768 * 180.02562 * 6 5 3
32 32 H 1.08996 * 109.47282 * 149.99978 * 11 2 1
33 33 H 1.09002 * 109.47011 * 30.00168 * 11 2 1
34 34 H 1.09005 * 109.46961 * 59.99453 * 12 11 2
35 35 H 1.08997 * 109.46707 * 300.00381 * 12 11 2
36 36 H 1.09005 * 109.46464 * 269.99783 * 14 13 12
37 37 H 1.08994 * 109.47028 * 29.99320 * 14 13 12
38 38 H 1.08999 * 109.46614 * 149.99813 * 14 13 12
39 39 H 1.09002 * 109.47491 * 59.99652 * 17 15 13
40 40 H 1.08999 * 109.47103 * 299.99743 * 17 15 13
41 41 H 1.09002 * 109.47206 * 59.99553 * 18 17 15
42 42 H 1.08999 * 109.47031 * 299.99863 * 18 17 15
43 43 H 1.08996 * 109.47313 * 60.00482 * 19 18 17
44 44 H 1.08999 * 109.47178 * 299.99874 * 19 18 17
45 45 H 1.08003 * 120.01700 * 359.97438 * 22 21 20
46 46 H 1.07995 * 119.97874 * 180.20600 * 23 22 21
47 47 H 1.08006 * 119.98533 * 180.02562 * 26 24 23
48 48 H 1.08000 * 120.01819 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1858 0.0000
4 1 3.1791 1.2151 -0.3254
5 6 1.5206 2.3505 0.4182
6 7 0.3875 2.2836 1.0844
7 14 2.2825 4.0126 0.0355
8 1 1.8683 4.4459 -1.3231
9 1 1.8222 5.0100 1.0349
10 1 3.7624 3.9033 0.0906
11 6 2.1974 -1.2687 0.0006
12 6 2.4524 -1.7099 1.4432
13 7 3.1844 -2.9789 1.4438
14 6 2.4512 -4.2474 1.4444
15 6 4.5321 -2.9795 1.4437
16 8 5.1389 -1.9295 1.4427
17 6 5.2850 -4.2849 1.4437
18 6 6.7894 -4.0060 1.4429
19 6 7.5538 -5.3313 1.4436
20 8 8.9589 -5.0708 1.4435
21 6 9.7865 -6.1493 1.4435
22 6 9.2565 -7.4311 1.4494
23 6 10.0988 -8.5262 1.4450
24 6 11.4713 -8.3446 1.4449
25 9 12.2939 -9.4163 1.4463
26 6 12.0017 -7.0657 1.4438
27 6 11.1619 -5.9689 1.4434
28 1 -0.3634 0.0913 1.0236
29 1 -0.3633 0.8408 -0.5909
30 1 -0.3633 -0.9321 -0.4328
31 1 -0.0523 3.0975 1.3763
32 1 3.1498 -1.1386 -0.5133
33 1 1.6084 -2.0286 -0.5130
34 1 1.4999 -1.8400 1.9571
35 1 3.0414 -0.9500 1.9568
36 1 2.2695 -4.5614 2.4723
37 1 1.4989 -4.1168 0.9306
38 1 3.0400 -5.0074 0.9308
39 1 5.0214 -4.8565 0.5538
40 1 5.0216 -4.8563 2.3337
41 1 7.0534 -3.4342 2.3326
42 1 7.0525 -3.4348 0.5527
43 1 7.2900 -5.9034 0.5541
44 1 7.2906 -5.9022 2.3341
45 1 8.1859 -7.5730 1.4544
46 1 9.6863 -9.5243 1.4462
47 1 13.0727 -6.9255 1.4433
48 1 11.5758 -4.9714 1.4429
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001715527364.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:44:45
Heat of formation + Delta-G solvation = -69.998782 kcal
Electronic energy + Delta-G solvation = -27912.229072 eV
Core-core repulsion = 23690.082612 eV
Total energy + Delta-G solvation = -4222.146460 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-49.18906 -40.52626 -39.68560 -37.73674 -36.14124 -34.87023 -34.01888 -31.71004
-31.44334 -29.93447 -28.89050 -27.35980 -26.25313 -25.80938 -24.12331 -23.28958
-22.56946 -21.62701 -20.47225 -19.05999 -18.52403 -17.75115 -17.17886 -16.82522
-16.72420 -16.53450 -15.93851 -15.76519 -15.52932 -15.13834 -14.74349 -14.59551
-14.07838 -14.07380 -13.67762 -13.53929 -13.32764 -13.17882 -12.98158 -12.83007
-12.64314 -12.44404 -12.35941 -12.22087 -11.90886 -11.68725 -11.53465 -11.27234
-11.14943 -10.87802 -10.85684 -10.79760 -10.49497 -10.13057 -9.90401 -9.76442
-9.65458 -9.52710 -8.61451 -8.51535 -8.35360 -6.75548 -5.69849 -3.12888
0.69483 0.78590 2.66267 2.85303 3.12919 3.30628 3.44263 3.49338
3.52365 3.89180 4.20572 4.30943 4.44762 4.56603 4.56969 4.63326
4.71739 4.80862 4.93556 4.98270 5.03449 5.13189 5.19787 5.33409
5.39061 5.42095 5.47737 5.64373 5.65904 5.67944 5.70664 5.77858
5.81594 5.83513 6.04156 6.24014 6.27296 6.28012 6.60423 6.70991
6.77085 6.96814 7.04445 7.36815 7.66238 7.70675 7.87864 8.40653
8.45587 9.27177 9.89771 10.36708 11.35816
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.001640 C = 0.001545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.619720 B =17071.907677 C =18121.106625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.163 3.837
2 N -0.599 5.599
3 C -0.251 4.251
4 H 0.071 0.929
5 C 0.000 4.000
6 N -0.910 5.910
7 Si 0.905 3.095
8 H -0.288 1.288
9 H -0.291 1.291
10 H -0.279 1.279
11 C 0.144 3.856
12 C 0.092 3.908
13 N -0.615 5.615
14 C 0.078 3.922
15 C 0.505 3.495
16 O -0.530 6.530
17 C -0.135 4.135
18 C -0.106 4.106
19 C 0.059 3.941
20 O -0.308 6.308
21 C 0.127 3.873
22 C -0.183 4.183
23 C -0.112 4.112
24 C 0.054 3.946
25 F -0.143 7.143
26 C -0.112 4.112
27 C -0.125 4.125
28 H 0.029 0.971
29 H 0.044 0.956
30 H -0.003 1.003
31 H 0.252 0.748
32 H 0.046 0.954
33 H 0.034 0.966
34 H 0.066 0.934
35 H 0.085 0.915
36 H 0.052 0.948
37 H 0.073 0.927
38 H 0.066 0.934
39 H 0.094 0.906
40 H 0.092 0.908
41 H 0.083 0.917
42 H 0.084 0.916
43 H 0.065 0.935
44 H 0.064 0.936
45 H 0.139 0.861
46 H 0.137 0.863
47 H 0.142 0.858
48 H 0.143 0.857
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.860 -25.235 1.776 29.339
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 N -0.322 5.322
3 C -0.380 4.380
4 H 0.089 0.911
5 C -0.198 4.198
6 N -0.556 5.556
7 Si 0.735 3.265
8 H -0.215 1.215
9 H -0.218 1.218
10 H -0.204 1.204
11 C 0.016 3.984
12 C -0.032 4.032
13 N -0.349 5.349
14 C -0.065 4.065
15 C 0.292 3.708
16 O -0.406 6.406
17 C -0.175 4.175
18 C -0.143 4.143
19 C -0.016 4.016
20 O -0.221 6.221
21 C 0.081 3.919
22 C -0.202 4.202
23 C -0.131 4.131
24 C 0.034 3.966
25 F -0.122 7.122
26 C -0.131 4.131
27 C -0.144 4.144
28 H 0.047 0.953
29 H 0.063 0.937
30 H 0.015 0.985
31 H 0.062 0.938
32 H 0.065 0.935
33 H 0.053 0.947
34 H 0.085 0.915
35 H 0.103 0.897
36 H 0.071 0.929
37 H 0.091 0.909
38 H 0.085 0.915
39 H 0.112 0.888
40 H 0.111 0.889
41 H 0.102 0.898
42 H 0.103 0.897
43 H 0.083 0.917
44 H 0.083 0.917
45 H 0.157 0.843
46 H 0.155 0.845
47 H 0.160 0.840
48 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 15.106 -24.334 1.829 28.699
hybrid contribution 0.116 0.398 0.001 0.414
sum 15.222 -23.936 1.830 28.425
Atomic orbital electron populations
1.20817 0.82397 0.95506 0.99435 1.43994 1.01937 1.00650 1.85607
1.19274 0.97024 0.84783 1.36965 0.91117 1.24966 0.97892 0.98425
0.98511 1.70081 1.18932 1.26794 1.39766 0.86251 0.78852 0.83866
0.77532 1.21499 1.21776 1.20424 1.21097 0.96019 0.88110 0.93177
1.22630 0.95445 0.83262 1.01880 1.48109 1.05689 1.07954 1.73135
1.21766 0.97727 0.85637 1.01398 1.20421 0.82359 0.90971 0.77013
1.90761 1.67459 1.33499 1.48930 1.21547 0.94840 0.96910 1.04210
1.21254 0.91959 0.95399 1.05736 1.22926 0.77960 0.99217 1.01475
1.86131 1.17646 1.30280 1.88022 1.19072 0.90686 0.86256 0.95907
1.21163 1.00812 0.91238 1.06985 1.20947 0.91429 1.00100 1.00608
1.17587 0.88042 0.83566 1.07373 1.91492 1.72005 1.54283 1.94375
1.20978 1.00984 0.90343 1.00800 1.20345 0.89947 0.99901 1.04165
0.95274 0.93719 0.98480 0.93808 0.93548 0.94724 0.91506 0.89669
0.92935 0.90862 0.91521 0.88815 0.88949 0.89806 0.89700 0.91697
0.91746 0.84341 0.84478 0.84044 0.83957
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.16 4.00 9.02 59.84 0.54 4.54 16
2 N -0.60 -15.37 2.93 -181.12 -0.53 -15.90 16
3 C -0.25 -7.15 9.68 -15.06 -0.15 -7.30 16
4 H 0.07 2.04 7.86 -52.49 -0.41 1.62 16
5 C 0.00 0.00 5.06 -17.43 -0.09 -0.09 16
6 N -0.91 -26.85 10.67 55.49 0.59 -26.26 16
7 Si 0.90 22.63 29.58 -169.99 -5.03 17.60 16
8 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16
9 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16
10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16
11 C 0.14 3.05 6.03 -4.04 -0.02 3.03 16
12 C 0.09 1.76 5.73 -4.04 -0.02 1.74 16
13 N -0.61 -8.99 2.87 -181.57 -0.52 -9.51 16
14 C 0.08 0.74 10.24 59.85 0.61 1.35 16
15 C 0.51 7.58 7.67 -10.99 -0.08 7.50 16
16 O -0.53 -10.66 15.56 5.56 0.09 -10.58 16
17 C -0.13 -1.23 4.25 -27.88 -0.12 -1.35 16
18 C -0.11 -1.05 4.87 -26.73 -0.13 -1.18 16
19 C 0.06 0.44 4.74 37.16 0.18 0.62 16
20 O -0.31 -3.02 10.14 -19.57 -0.20 -3.21 16
21 C 0.13 1.11 6.69 -39.23 -0.26 0.85 16
22 C -0.18 -1.32 9.04 -39.44 -0.36 -1.67 16
23 C -0.11 -0.80 10.02 -39.53 -0.40 -1.20 16
24 C 0.05 0.44 7.30 -39.42 -0.29 0.15 16
25 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16
26 C -0.11 -0.82 10.02 -39.54 -0.40 -1.22 16
27 C -0.12 -0.99 9.98 -39.44 -0.39 -1.39 16
28 H 0.03 0.76 7.40 -51.93 -0.38 0.38 16
29 H 0.04 1.18 7.21 -51.93 -0.37 0.81 16
30 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16
31 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16
32 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16
33 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16
34 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16
35 H 0.08 1.97 7.42 -51.93 -0.39 1.58 16
36 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16
37 H 0.07 0.69 8.07 -51.93 -0.42 0.27 16
38 H 0.07 0.44 6.44 -51.93 -0.33 0.11 16
39 H 0.09 0.64 7.40 -51.93 -0.38 0.26 16
40 H 0.09 0.63 8.11 -51.93 -0.42 0.20 16
41 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16
42 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16
43 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16
44 H 0.06 0.38 7.65 -51.93 -0.40 -0.02 16
45 H 0.14 0.71 6.30 -52.48 -0.33 0.38 16
46 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16
47 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16
48 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16
LS Contribution 400.84 15.07 6.04 6.04
Total: -1.00 -34.44 400.84 -8.46 -42.90
By element:
Atomic # 1 Polarization: 3.35 SS G_CDS: -7.56 Total: -4.21 kcal
Atomic # 6 Polarization: 5.76 SS G_CDS: -1.38 Total: 4.39 kcal
Atomic # 7 Polarization: -51.21 SS G_CDS: -0.46 Total: -51.67 kcal
Atomic # 8 Polarization: -13.68 SS G_CDS: -0.11 Total: -13.79 kcal
Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal
Atomic # 14 Polarization: 22.63 SS G_CDS: -5.03 Total: 17.60 kcal
Total LS contribution 6.04 Total: 6.04 kcal
Total: -34.44 -8.46 -42.90 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715527364.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.096 kcal
(2) G-P(sol) polarization free energy of solvation -34.443 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.540 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.902 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds