Wall clock time and date at job start Tue Mar 31 2020 21:44:44
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46496 * 1
3 3 C 1.36932 * 120.00128 * 2 1
4 4 H 1.08001 * 120.00373 * 200.35842 * 3 2 1
5 5 C 1.38815 * 119.99957 * 20.35671 * 3 2 1
6 6 N 1.31616 * 119.99795 * 14.99353 * 5 3 2
7 7 Si 1.86801 * 119.99905 * 194.98698 * 5 3 2
8 8 H 1.48497 * 109.46863 * 85.00732 * 7 5 3
9 9 H 1.48504 * 109.47199 * 205.00178 * 7 5 3
10 10 H 1.48494 * 109.47529 * 325.00413 * 7 5 3
11 11 C 1.46498 * 119.99986 * 179.97438 * 2 1 3
12 12 C 1.53001 * 109.47632 * 270.00472 * 11 2 1
13 13 N 1.46498 * 109.47632 * 179.97438 * 12 11 2
14 14 C 1.46505 * 119.99762 * 270.00395 * 13 12 11
15 15 C 1.34776 * 119.99872 * 89.99908 * 13 12 11
16 16 O 1.21273 * 120.00093 * 359.97438 * 15 13 12
17 17 C 1.50700 * 119.99746 * 180.02562 * 15 13 12
18 18 C 1.52996 * 109.47029 * 179.97438 * 17 15 13
19 19 C 1.52999 * 109.47043 * 179.97438 * 18 17 15
20 20 O 1.42907 * 109.47023 * 180.02562 * 19 18 17
21 21 C 1.35945 * 116.99939 * 180.02562 * 20 19 18
22 22 C 1.38707 * 120.03010 * 359.72265 * 21 20 19
23 23 C 1.38158 * 119.96787 * 179.79209 * 22 21 20
24 24 C 1.38449 * 120.02758 * 0.48664 * 23 22 21
25 25 F 1.35101 * 119.96799 * 179.72285 * 24 23 22
26 26 C 1.38455 * 120.06300 * 359.74298 * 24 23 22
27 27 C 1.38143 * 120.03128 * 0.02606 * 26 24 23
28 28 H 1.09004 * 109.47705 * 275.09931 * 1 2 3
29 29 H 1.08999 * 109.47032 * 35.10245 * 1 2 3
30 30 H 1.09000 * 109.47187 * 155.09583 * 1 2 3
31 31 H 0.97008 * 119.99768 * 180.02562 * 6 5 3
32 32 H 1.08996 * 109.47282 * 149.99978 * 11 2 1
33 33 H 1.09002 * 109.47011 * 30.00168 * 11 2 1
34 34 H 1.09005 * 109.46961 * 59.99453 * 12 11 2
35 35 H 1.08997 * 109.46707 * 300.00381 * 12 11 2
36 36 H 1.09005 * 109.46464 * 269.99783 * 14 13 12
37 37 H 1.08994 * 109.47028 * 29.99320 * 14 13 12
38 38 H 1.08999 * 109.46614 * 149.99813 * 14 13 12
39 39 H 1.09002 * 109.47491 * 59.99652 * 17 15 13
40 40 H 1.08999 * 109.47103 * 299.99743 * 17 15 13
41 41 H 1.09002 * 109.47206 * 59.99553 * 18 17 15
42 42 H 1.08999 * 109.47031 * 299.99863 * 18 17 15
43 43 H 1.08996 * 109.47313 * 60.00482 * 19 18 17
44 44 H 1.08999 * 109.47178 * 299.99874 * 19 18 17
45 45 H 1.08003 * 120.01700 * 359.97438 * 22 21 20
46 46 H 1.07995 * 119.97874 * 180.20600 * 23 22 21
47 47 H 1.08006 * 119.98533 * 180.02562 * 26 24 23
48 48 H 1.08000 * 120.01819 * 179.97438 * 27 26 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1496 1.1858 0.0000
4 1 3.1791 1.2151 -0.3254
5 6 1.5206 2.3505 0.4182
6 7 0.3875 2.2836 1.0844
7 14 2.2825 4.0126 0.0355
8 1 1.8683 4.4459 -1.3231
9 1 1.8222 5.0100 1.0349
10 1 3.7624 3.9033 0.0906
11 6 2.1974 -1.2687 0.0006
12 6 2.4524 -1.7099 1.4432
13 7 3.1844 -2.9789 1.4438
14 6 2.4512 -4.2474 1.4444
15 6 4.5321 -2.9795 1.4437
16 8 5.1389 -1.9295 1.4427
17 6 5.2850 -4.2849 1.4437
18 6 6.7894 -4.0060 1.4429
19 6 7.5538 -5.3313 1.4436
20 8 8.9589 -5.0708 1.4435
21 6 9.7865 -6.1493 1.4435
22 6 9.2565 -7.4311 1.4494
23 6 10.0988 -8.5262 1.4450
24 6 11.4713 -8.3446 1.4449
25 9 12.2939 -9.4163 1.4463
26 6 12.0017 -7.0657 1.4438
27 6 11.1619 -5.9689 1.4434
28 1 -0.3634 0.0913 1.0236
29 1 -0.3633 0.8408 -0.5909
30 1 -0.3633 -0.9321 -0.4328
31 1 -0.0523 3.0975 1.3763
32 1 3.1498 -1.1386 -0.5133
33 1 1.6084 -2.0286 -0.5130
34 1 1.4999 -1.8400 1.9571
35 1 3.0414 -0.9500 1.9568
36 1 2.2695 -4.5614 2.4723
37 1 1.4989 -4.1168 0.9306
38 1 3.0400 -5.0074 0.9308
39 1 5.0214 -4.8565 0.5538
40 1 5.0216 -4.8563 2.3337
41 1 7.0534 -3.4342 2.3326
42 1 7.0525 -3.4348 0.5527
43 1 7.2900 -5.9034 0.5541
44 1 7.2906 -5.9022 2.3341
45 1 8.1859 -7.5730 1.4544
46 1 9.6863 -9.5243 1.4462
47 1 13.0727 -6.9255 1.4433
48 1 11.5758 -4.9714 1.4429
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001715527364.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 21:44:44
Heat of formation + Delta-G solvation = -90.636697 kcal
Electronic energy + Delta-G solvation = -27913.124000 eV
Core-core repulsion = 23690.082612 eV
Total energy + Delta-G solvation = -4223.041387 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 338.179 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-49.81576 -41.16814 -40.82271 -38.34989 -37.84441 -36.36990 -34.86653 -33.43948
-32.22808 -30.80544 -30.15235 -28.21721 -27.91169 -27.28793 -25.31768 -24.23809
-23.32381 -22.56805 -22.06711 -20.06519 -19.22136 -18.83844 -18.39752 -18.01232
-17.49521 -17.40785 -17.11417 -16.78680 -16.57712 -16.33302 -15.70872 -15.59421
-15.25662 -15.24569 -14.86922 -14.60421 -14.48833 -14.16229 -14.03675 -13.86741
-13.82487 -13.52964 -13.24797 -13.18737 -13.07536 -12.90177 -12.79990 -12.70874
-12.44959 -12.38862 -12.17596 -12.08167 -12.01415 -11.71204 -11.60851 -11.49857
-10.79226 -10.69624 -10.17978 -9.71696 -9.10744 -8.80557 -7.88038 -5.33198
0.17026 0.20338 1.42615 1.43329 1.52475 1.72081 1.93277 2.31735
2.50266 2.57495 3.25507 3.33704 3.55642 3.71755 3.77487 3.82653
3.94465 4.02969 4.07369 4.14663 4.27379 4.36343 4.40607 4.42488
4.48027 4.48970 4.60896 4.64386 4.69879 4.81281 4.83679 4.91577
4.98562 5.02020 5.08348 5.12953 5.15481 5.18391 5.21247 5.28825
5.32097 5.55672 5.64724 5.70993 5.72261 6.28702 6.40473 6.54278
7.12099 7.29694 7.83540 8.23175 9.15096
Molecular weight = 338.18amu
Principal moments of inertia in cm(-1)
A = 0.021791 B = 0.001640 C = 0.001545
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1284.619720 B =17071.907677 C =18121.106625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.177 3.823
2 N -0.617 5.617
3 C -0.264 4.264
4 H 0.057 0.943
5 C -0.049 4.049
6 N -0.933 5.933
7 Si 0.965 3.035
8 H -0.280 1.280
9 H -0.289 1.289
10 H -0.279 1.279
11 C 0.149 3.851
12 C 0.110 3.890
13 N -0.615 5.615
14 C 0.070 3.930
15 C 0.494 3.506
16 O -0.597 6.597
17 C -0.118 4.118
18 C -0.103 4.103
19 C 0.061 3.939
20 O -0.333 6.333
21 C 0.111 3.889
22 C -0.180 4.180
23 C -0.112 4.112
24 C 0.035 3.965
25 F -0.151 7.151
26 C -0.114 4.114
27 C -0.139 4.139
28 H 0.007 0.993
29 H 0.016 0.984
30 H 0.039 0.961
31 H 0.250 0.750
32 H 0.024 0.976
33 H 0.069 0.931
34 H 0.073 0.927
35 H 0.033 0.967
36 H 0.072 0.928
37 H 0.076 0.924
38 H 0.106 0.894
39 H 0.132 0.868
40 H 0.130 0.870
41 H 0.057 0.943
42 H 0.056 0.944
43 H 0.090 0.910
44 H 0.090 0.910
45 H 0.165 0.835
46 H 0.158 0.842
47 H 0.156 0.844
48 H 0.145 0.855
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 14.438 -28.550 1.464 32.026
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C 0.032 3.968
2 N -0.341 5.341
3 C -0.394 4.394
4 H 0.075 0.925
5 C -0.245 4.245
6 N -0.580 5.580
7 Si 0.793 3.207
8 H -0.206 1.206
9 H -0.215 1.215
10 H -0.204 1.204
11 C 0.022 3.978
12 C -0.016 4.016
13 N -0.348 5.348
14 C -0.071 4.071
15 C 0.284 3.716
16 O -0.477 6.477
17 C -0.157 4.157
18 C -0.142 4.142
19 C -0.013 4.013
20 O -0.247 6.247
21 C 0.065 3.935
22 C -0.198 4.198
23 C -0.130 4.130
24 C 0.016 3.984
25 F -0.130 7.130
26 C -0.132 4.132
27 C -0.157 4.157
28 H 0.026 0.974
29 H 0.035 0.965
30 H 0.057 0.943
31 H 0.059 0.941
32 H 0.043 0.957
33 H 0.087 0.913
34 H 0.091 0.909
35 H 0.052 0.948
36 H 0.090 0.910
37 H 0.094 0.906
38 H 0.124 0.876
39 H 0.149 0.851
40 H 0.148 0.852
41 H 0.075 0.925
42 H 0.075 0.925
43 H 0.108 0.892
44 H 0.108 0.892
45 H 0.182 0.818
46 H 0.176 0.824
47 H 0.174 0.826
48 H 0.163 0.837
Dipole moment (debyes) X Y Z Total
from point charges 14.676 -27.726 1.513 31.407
hybrid contribution 0.276 1.353 0.090 1.384
sum 14.952 -26.373 1.603 30.359
Atomic orbital electron populations
1.20599 0.81825 0.96406 0.97931 1.44190 1.02569 1.01374 1.85926
1.19405 0.96718 0.86535 1.36762 0.92526 1.25661 0.98623 1.01422
0.98748 1.70215 1.19924 1.27267 1.40594 0.85323 0.77931 0.79973
0.77490 1.20644 1.21548 1.20424 1.21134 0.95039 0.87180 0.94432
1.21953 0.95198 0.84773 0.99655 1.48141 1.05941 1.08101 1.72580
1.22153 0.97992 0.83589 1.03409 1.21587 0.82377 0.92423 0.75247
1.90739 1.68779 1.36432 1.51774 1.21557 0.92845 0.93670 1.07673
1.21159 0.93328 0.96497 1.03168 1.22984 0.76749 0.97748 1.03836
1.86092 1.18827 1.31366 1.88409 1.19288 0.90800 0.86713 0.96666
1.21415 1.02140 0.90293 1.05970 1.21218 0.90954 1.01210 0.99645
1.17862 0.88697 0.83576 1.08274 1.91470 1.72340 1.54625 1.94541
1.21145 1.01805 0.90023 1.00260 1.20512 0.90261 1.00330 1.04622
0.97428 0.96489 0.94301 0.94092 0.95737 0.91318 0.90884 0.94790
0.90980 0.90566 0.87561 0.85051 0.85178 0.92463 0.92496 0.89238
0.89226 0.81751 0.82421 0.82615 0.83672
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.18 8.68 9.02 127.77 1.15 9.84 16
2 N -0.62 -32.11 2.93 -726.95 -2.13 -34.24 16
3 C -0.26 -15.50 9.68 84.04 0.81 -14.69 16
4 H 0.06 3.41 7.86 -2.91 -0.02 3.39 16
5 C -0.05 -2.88 5.06 84.86 0.43 -2.45 16
6 N -0.93 -56.28 10.67 21.65 0.23 -56.05 16
7 Si 0.96 47.54 29.58 68.60 2.03 49.57 16
8 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16
9 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16
10 H -0.28 -13.60 7.11 99.48 0.71 -12.90 16
11 C 0.15 6.30 6.03 86.38 0.52 6.82 16
12 C 0.11 4.26 5.73 86.38 0.49 4.75 16
13 N -0.61 -16.94 2.87 -846.75 -2.43 -19.37 16
14 C 0.07 1.01 10.24 127.77 1.31 2.32 16
15 C 0.49 14.42 7.67 87.66 0.67 15.09 16
16 O -0.60 -25.21 15.56 -3.01 -0.05 -25.26 16
17 C -0.12 -1.75 4.25 29.85 0.13 -1.63 16
18 C -0.10 -1.93 4.87 30.59 0.15 -1.78 16
19 C 0.06 0.74 4.74 71.98 0.34 1.08 16
20 O -0.33 -6.15 10.14 -92.93 -0.94 -7.09 16
21 C 0.11 1.78 6.69 22.50 0.15 1.93 16
22 C -0.18 -2.07 9.04 22.36 0.20 -1.87 16
23 C -0.11 -1.33 10.02 22.30 0.22 -1.11 16
24 C 0.04 0.53 7.30 22.37 0.16 0.69 16
25 F -0.15 -2.58 17.27 44.97 0.78 -1.80 16
26 C -0.11 -1.58 10.02 22.30 0.22 -1.36 16
27 C -0.14 -2.13 9.98 22.36 0.22 -1.91 16
28 H 0.01 0.39 7.40 -2.39 -0.02 0.38 16
29 H 0.02 0.89 7.21 -2.39 -0.02 0.87 16
30 H 0.04 1.55 7.84 -2.39 -0.02 1.53 16
31 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16
32 H 0.02 1.12 8.03 -2.39 -0.02 1.10 16
33 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16
34 H 0.07 2.70 8.07 -2.38 -0.02 2.68 16
35 H 0.03 1.65 7.42 -2.39 -0.02 1.63 16
36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16
37 H 0.08 1.10 8.07 -2.39 -0.02 1.08 16
38 H 0.11 0.73 6.44 -2.39 -0.02 0.72 16
39 H 0.13 1.05 7.40 -2.39 -0.02 1.03 16
40 H 0.13 1.05 8.11 -2.39 -0.02 1.03 16
41 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16
42 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16
43 H 0.09 0.66 7.67 -2.39 -0.02 0.64 16
44 H 0.09 0.65 7.65 -2.39 -0.02 0.63 16
45 H 0.17 0.93 6.30 -2.91 -0.02 0.91 16
46 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16
47 H 0.16 1.55 8.06 -2.91 -0.02 1.53 16
48 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16
Total: -1.00 -81.15 400.84 5.63 -75.52
By element:
Atomic # 1 Polarization: 2.07 SS G_CDS: 0.94 Total: 3.02 kcal
Atomic # 6 Polarization: 8.52 SS G_CDS: 7.20 Total: 15.71 kcal
Atomic # 7 Polarization: -105.33 SS G_CDS: -4.33 Total: -109.66 kcal
Atomic # 8 Polarization: -31.36 SS G_CDS: -0.99 Total: -32.35 kcal
Atomic # 9 Polarization: -2.58 SS G_CDS: 0.78 Total: -1.80 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.57 kcal
Total: -81.15 5.63 -75.52 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001715527364.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.115 kcal
(2) G-P(sol) polarization free energy of solvation -81.148 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.263 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.626 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) -90.637 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds