Wall clock time and date at job start Tue Mar 31 2020 21:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36933 * 120.00473 * 2 1 4 4 H 1.07999 * 120.00346 * 202.34701 * 3 2 1 5 5 C 1.38817 * 119.99508 * 22.34455 * 3 2 1 6 6 N 1.31618 * 120.00064 * 11.34564 * 5 3 2 7 7 Si 1.86801 * 119.99688 * 191.34550 * 5 3 2 8 8 H 1.48506 * 109.46906 * 60.00111 * 7 5 3 9 9 H 1.48503 * 109.47088 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47395 * 300.00387 * 7 5 3 11 11 C 1.46503 * 119.99705 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46950 * 269.99861 * 11 2 1 13 13 N 1.46496 * 109.47013 * 180.02562 * 12 11 2 14 14 C 1.46507 * 119.99459 * 269.99993 * 13 12 11 15 15 C 1.34774 * 120.00443 * 89.99837 * 13 12 11 16 16 O 1.21279 * 119.99839 * 0.02562 * 15 13 12 17 17 C 1.50699 * 119.99865 * 179.97438 * 15 13 12 18 18 C 1.53010 * 109.46904 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.46940 * 179.97438 * 18 17 15 20 20 O 1.42901 * 109.47082 * 179.97438 * 19 18 17 21 21 C 1.35895 * 117.00167 * 180.02562 * 20 19 18 22 22 C 1.38768 * 120.04018 * 359.71699 * 21 20 19 23 23 C 1.38134 * 119.99245 * 179.74641 * 22 21 20 24 24 C 1.38258 * 120.07915 * 0.53858 * 23 22 21 25 25 C 1.38478 * 120.08262 * 359.74057 * 24 23 22 26 26 F 1.35095 * 119.99344 * 180.02562 * 25 24 23 27 27 C 1.38380 * 120.00464 * 359.97438 * 25 24 23 28 28 H 1.08998 * 109.47035 * 274.20828 * 1 2 3 29 29 H 1.09002 * 109.46764 * 34.21299 * 1 2 3 30 30 H 1.09004 * 109.47345 * 154.20958 * 1 2 3 31 31 H 0.97001 * 119.99390 * 179.97438 * 6 5 3 32 32 H 1.08998 * 109.47177 * 150.00036 * 11 2 1 33 33 H 1.08994 * 109.47440 * 30.00013 * 11 2 1 34 34 H 1.08998 * 109.47038 * 60.00089 * 12 11 2 35 35 H 1.08998 * 109.46698 * 300.00220 * 12 11 2 36 36 H 1.09007 * 109.47008 * 269.99672 * 14 13 12 37 37 H 1.08995 * 109.47201 * 30.00041 * 14 13 12 38 38 H 1.09002 * 109.47174 * 150.00573 * 14 13 12 39 39 H 1.08997 * 109.47410 * 59.99868 * 17 15 13 40 40 H 1.09004 * 109.46975 * 299.99540 * 17 15 13 41 41 H 1.08997 * 109.47129 * 60.00074 * 18 17 15 42 42 H 1.09001 * 109.46999 * 299.99876 * 18 17 15 43 43 H 1.09007 * 109.46970 * 60.00136 * 19 18 17 44 44 H 1.09001 * 109.47330 * 299.99866 * 19 18 17 45 45 H 1.07998 * 120.00904 * 0.02562 * 22 21 20 46 46 H 1.08002 * 119.96505 * 180.27595 * 23 22 21 47 47 H 1.08003 * 119.95856 * 179.76350 * 24 23 22 48 48 H 1.08001 * 120.03689 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2209 -0.3556 5 6 1.5338 2.3429 0.4571 6 7 0.3842 2.2690 1.0936 7 14 2.3368 4.0047 0.1687 8 1 2.4917 4.2330 -1.2905 9 1 1.4845 5.0735 0.7488 10 1 3.6721 4.0286 0.8179 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4418 13 7 3.1854 -2.9795 1.4413 14 6 2.4532 -4.2485 1.4406 15 6 4.5331 -2.9791 1.4414 16 8 5.1392 -1.9286 1.4424 17 6 5.2870 -4.2840 1.4414 18 6 6.7912 -4.0040 1.4422 19 6 7.5566 -5.3288 1.4429 20 8 8.9615 -5.0672 1.4430 21 6 9.7896 -6.1447 1.4430 22 6 9.2605 -7.4275 1.4489 23 6 10.1032 -8.5221 1.4436 24 6 11.4739 -8.3413 1.4438 25 6 12.0054 -7.0625 1.4438 26 9 13.3450 -6.8880 1.4434 27 6 11.1644 -5.9636 1.4431 28 1 -0.3633 0.0754 1.0249 29 1 -0.3633 0.8499 -0.5778 30 1 -0.3634 -0.9253 -0.4471 31 1 -0.0460 3.0775 1.4132 32 1 3.1498 -1.1383 -0.5143 33 1 1.6084 -2.0282 -0.5147 34 1 1.5000 -1.8416 1.9556 35 1 3.0415 -0.9516 1.9559 36 1 2.2715 -4.5638 2.4681 37 1 1.5008 -4.1182 0.9267 38 1 3.0426 -5.0078 0.9265 39 1 5.0239 -4.8556 0.5514 40 1 5.0238 -4.8556 2.3314 41 1 7.0539 -3.4326 2.3324 42 1 7.0548 -3.4321 0.5525 43 1 7.2939 -5.9006 0.5528 44 1 7.2930 -5.9003 2.3328 45 1 8.1900 -7.5703 1.4530 46 1 9.6909 -9.5203 1.4436 47 1 12.1310 -9.1984 1.4435 48 1 11.5783 -4.9661 1.4427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715536907.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:48 Heat of formation + Delta-G solvation = -90.927474 kcal Electronic energy + Delta-G solvation = -27959.004095 eV Core-core repulsion = 23735.950098 eV Total energy + Delta-G solvation = -4223.053996 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.98514 -41.18812 -40.82859 -38.37868 -37.84448 -36.37057 -34.90456 -33.44302 -31.88117 -30.88082 -30.38350 -28.27645 -27.91583 -27.29004 -25.27594 -24.06896 -23.55347 -22.52193 -22.04423 -20.10462 -19.44999 -18.84246 -18.09457 -17.52269 -17.48220 -17.22642 -17.07897 -16.99662 -16.70257 -16.66507 -16.34322 -15.63291 -15.34701 -15.25419 -14.87162 -14.70815 -14.53506 -14.17672 -13.89190 -13.82203 -13.70594 -13.27717 -13.21007 -13.07505 -12.99794 -12.92112 -12.78622 -12.72946 -12.47476 -12.40894 -12.22484 -12.10414 -12.02509 -11.86089 -11.60688 -11.55400 -10.79605 -10.69963 -9.91880 -9.71631 -9.31362 -8.78396 -7.88006 -5.35235 0.10824 0.28604 1.41718 1.43989 1.50728 1.71832 1.87392 2.25130 2.49328 2.59125 3.26195 3.33680 3.56253 3.76035 3.78259 3.93456 3.98687 4.00311 4.06585 4.13304 4.21093 4.37201 4.40115 4.42665 4.46933 4.48895 4.50199 4.60915 4.68082 4.81609 4.84484 4.98472 5.00657 5.02185 5.07415 5.09599 5.18498 5.20798 5.26842 5.32936 5.34513 5.55673 5.64333 5.71973 5.73461 6.29613 6.37185 6.54215 7.12537 7.29588 7.83315 8.23458 9.14908 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.001696 C = 0.001578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.986280 B =16501.375389 C =17741.675934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.617 5.617 3 C -0.264 4.264 4 H 0.056 0.944 5 C -0.049 4.049 6 N -0.934 5.934 7 Si 0.965 3.035 8 H -0.276 1.276 9 H -0.286 1.286 10 H -0.284 1.284 11 C 0.150 3.850 12 C 0.110 3.890 13 N -0.614 5.614 14 C 0.070 3.930 15 C 0.493 3.507 16 O -0.598 6.598 17 C -0.117 4.117 18 C -0.104 4.104 19 C 0.062 3.938 20 O -0.336 6.336 21 C 0.147 3.853 22 C -0.215 4.215 23 C -0.043 4.043 24 C -0.195 4.195 25 C 0.118 3.882 26 F -0.146 7.146 27 C -0.216 4.216 28 H 0.007 0.993 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.250 0.750 32 H 0.023 0.977 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.033 0.967 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.055 0.945 42 H 0.055 0.945 43 H 0.093 0.907 44 H 0.093 0.907 45 H 0.164 0.836 46 H 0.173 0.827 47 H 0.155 0.845 48 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.383 -30.910 1.468 33.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.341 5.341 3 C -0.395 4.395 4 H 0.074 0.926 5 C -0.244 4.244 6 N -0.580 5.580 7 Si 0.793 3.207 8 H -0.202 1.202 9 H -0.212 1.212 10 H -0.210 1.210 11 C 0.022 3.978 12 C -0.016 4.016 13 N -0.347 5.347 14 C -0.072 4.072 15 C 0.283 3.717 16 O -0.478 6.478 17 C -0.156 4.156 18 C -0.143 4.143 19 C -0.012 4.012 20 O -0.250 6.250 21 C 0.101 3.899 22 C -0.234 4.234 23 C -0.061 4.061 24 C -0.214 4.214 25 C 0.099 3.901 26 F -0.125 7.125 27 C -0.236 4.236 28 H 0.025 0.975 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.042 0.958 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.051 0.949 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.125 0.875 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.182 0.818 46 H 0.190 0.810 47 H 0.173 0.827 48 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 13.632 -30.027 1.517 33.011 hybrid contribution 0.566 1.908 0.134 1.995 sum 14.197 -28.119 1.651 31.543 Atomic orbital electron populations 1.20597 0.81812 0.96403 0.97830 1.44160 1.02567 1.01334 1.86056 1.19366 0.97660 0.86963 1.35485 0.92633 1.25720 0.98474 1.01614 0.98602 1.70191 1.18867 1.27625 1.41363 0.85378 0.77522 0.79769 0.78007 1.20234 1.21162 1.21035 1.21133 0.95003 0.87208 0.94418 1.21948 0.95177 0.84780 0.99662 1.48140 1.05918 1.08123 1.72553 1.22160 0.98014 0.83547 1.03436 1.21600 0.82398 0.92429 0.75251 1.90743 1.68852 1.36429 1.51810 1.21554 0.92637 0.93670 1.07780 1.21174 0.93480 0.96536 1.03082 1.23022 0.76264 0.97774 1.04120 1.86066 1.19131 1.31640 1.88138 1.18805 0.89378 0.87149 0.94580 1.21720 1.02790 0.90670 1.08216 1.21249 0.91372 1.00337 0.93161 1.21391 0.97541 0.95299 1.07162 1.17547 0.76564 0.94462 1.01547 1.91487 1.30640 1.96451 1.93885 1.20391 0.91781 0.99658 1.11736 0.97492 0.96333 0.94476 0.94071 0.95810 0.91326 0.90852 0.94856 0.90950 0.90569 0.87498 0.84919 0.85054 0.92584 0.92612 0.88936 0.88909 0.81811 0.80992 0.82709 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.77 9.01 127.77 1.15 9.92 16 2 N -0.62 -32.28 2.93 -726.92 -2.13 -34.41 16 3 C -0.26 -15.59 9.67 84.04 0.81 -14.77 16 4 H 0.06 3.35 7.84 -2.91 -0.02 3.33 16 5 C -0.05 -2.87 5.13 84.86 0.44 -2.44 16 6 N -0.93 -56.39 10.59 21.65 0.23 -56.16 16 7 Si 0.97 47.76 29.57 68.60 2.03 49.78 16 8 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 9 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 10 H -0.28 -14.04 7.11 99.48 0.71 -13.33 16 11 C 0.15 6.34 6.03 86.38 0.52 6.86 16 12 C 0.11 4.28 5.73 86.38 0.50 4.78 16 13 N -0.61 -17.01 2.87 -846.74 -2.43 -19.44 16 14 C 0.07 1.00 10.24 127.77 1.31 2.31 16 15 C 0.49 14.51 7.67 87.66 0.67 15.19 16 16 O -0.60 -25.53 15.56 -3.03 -0.05 -25.57 16 17 C -0.12 -1.74 4.25 29.85 0.13 -1.62 16 18 C -0.10 -2.01 4.87 30.60 0.15 -1.86 16 19 C 0.06 0.77 4.74 71.98 0.34 1.11 16 20 O -0.34 -6.66 10.14 -92.37 -0.94 -7.60 16 21 C 0.15 2.55 6.68 22.50 0.15 2.70 16 22 C -0.22 -2.26 9.04 22.37 0.20 -2.06 16 23 C -0.04 -0.36 10.04 22.25 0.22 -0.13 16 24 C -0.20 -2.30 10.02 22.33 0.22 -2.08 16 25 C 0.12 2.07 7.30 22.36 0.16 2.24 16 26 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 27 C -0.22 -4.20 9.97 22.41 0.22 -3.98 16 28 H 0.01 0.36 7.42 -2.39 -0.02 0.34 16 29 H 0.02 0.98 7.19 -2.39 -0.02 0.96 16 30 H 0.04 1.49 7.84 -2.39 -0.02 1.47 16 31 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.02 1.10 8.03 -2.39 -0.02 1.08 16 33 H 0.07 2.42 7.86 -2.39 -0.02 2.40 16 34 H 0.07 2.73 8.07 -2.39 -0.02 2.71 16 35 H 0.03 1.63 7.42 -2.39 -0.02 1.61 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.08 1.10 8.07 -2.39 -0.02 1.08 16 38 H 0.11 0.71 6.44 -2.39 -0.02 0.70 16 39 H 0.13 1.03 7.40 -2.39 -0.02 1.02 16 40 H 0.13 1.04 8.11 -2.39 -0.02 1.02 16 41 H 0.06 1.36 8.10 -2.39 -0.02 1.34 16 42 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 43 H 0.09 0.67 7.67 -2.38 -0.02 0.65 16 44 H 0.09 0.66 7.65 -2.39 -0.02 0.64 16 45 H 0.16 0.72 6.30 -2.91 -0.02 0.70 16 46 H 0.17 0.16 8.06 -2.91 -0.02 0.13 16 47 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.13 2.68 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -82.98 400.79 5.64 -77.35 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: 0.94 Total: 1.99 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 7.20 Total: 16.18 kcal Atomic # 7 Polarization: -105.68 SS G_CDS: -4.33 Total: -110.01 kcal Atomic # 8 Polarization: -32.19 SS G_CDS: -0.98 Total: -33.17 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 47.76 SS G_CDS: 2.03 Total: 49.78 kcal Total: -82.98 5.64 -77.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715536907.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.581 kcal (2) G-P(sol) polarization free energy of solvation -82.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds