Wall clock time and date at job start Tue Mar 31 2020 20:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.53005 * 109.46797 * 240.00674 * 2 1 3 5 5 N 1.46503 * 109.47129 * 184.99989 * 4 2 1 6 6 C 1.46499 * 119.99978 * 269.72453 * 5 4 2 7 7 C 1.36939 * 119.99922 * 89.99236 * 5 4 2 8 8 H 1.08002 * 120.00365 * 342.71157 * 7 5 4 9 9 C 1.38816 * 119.99872 * 162.70845 * 7 5 4 10 10 N 1.31620 * 119.99703 * 345.44197 * 9 7 5 11 11 Si 1.86799 * 120.00064 * 165.44166 * 9 7 5 12 12 H 1.48499 * 109.46835 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47196 * 120.00047 * 11 9 7 14 14 H 1.48496 * 109.46925 * 240.00214 * 11 9 7 15 15 N 1.46493 * 109.47317 * 120.00575 * 2 1 3 16 16 C 1.34781 * 119.99905 * 274.99989 * 15 2 1 17 17 O 1.21278 * 120.00082 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99943 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47283 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47271 * 179.97438 * 20 19 18 22 22 C 1.35949 * 117.00315 * 179.97438 * 21 20 19 23 23 C 1.38708 * 120.02657 * 359.72243 * 22 21 20 24 24 C 1.38152 * 119.97079 * 179.79332 * 23 22 21 25 25 C 1.38461 * 120.02606 * 0.48468 * 24 23 22 26 26 F 1.35103 * 119.96906 * 179.72621 * 25 24 23 27 27 C 1.38453 * 120.06024 * 359.74520 * 25 24 23 28 28 C 1.38147 * 120.02955 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47147 * 299.99770 * 1 2 3 31 31 H 1.08997 * 109.47591 * 59.99720 * 1 2 3 32 32 H 1.08993 * 109.47600 * 64.99472 * 4 2 1 33 33 H 1.09001 * 109.46815 * 304.99464 * 4 2 1 34 34 H 1.09001 * 109.46994 * 265.36631 * 6 5 4 35 35 H 1.09005 * 109.46793 * 25.36117 * 6 5 4 36 36 H 1.08997 * 109.47032 * 145.36371 * 6 5 4 37 37 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 38 38 H 0.97006 * 120.00123 * 94.99624 * 15 2 1 39 39 H 1.09004 * 109.46705 * 299.99553 * 18 16 15 40 40 H 1.08999 * 109.47680 * 59.99519 * 18 16 15 41 41 H 1.09006 * 109.46798 * 299.99908 * 19 18 16 42 42 H 1.08999 * 109.47222 * 59.99260 * 19 18 16 43 43 H 1.09006 * 109.47202 * 299.99751 * 20 19 18 44 44 H 1.08999 * 109.47522 * 59.99534 * 20 19 18 45 45 H 1.08001 * 120.01933 * 359.97438 * 23 22 21 46 46 H 1.07997 * 119.98718 * 180.21000 * 24 23 22 47 47 H 1.08001 * 119.98417 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01703 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2312 -1.7668 7 6 4.0849 -1.9158 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4196 -2.2055 -0.8506 10 7 6.0439 -1.6241 -1.8529 11 14 6.3296 -3.4205 0.2381 12 1 5.4102 -3.9303 1.2869 13 1 6.8181 -4.5547 -0.5867 14 1 7.4840 -2.7418 0.8798 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4116 18 6 2.6500 -0.7288 3.5873 19 6 2.7020 0.2543 4.7585 20 6 3.2119 -0.4670 6.0076 21 8 3.2611 0.4514 7.1013 22 6 3.6953 -0.0330 8.2951 23 6 4.0607 -1.3660 8.4117 24 6 4.5059 -1.8560 9.6243 25 6 4.5778 -1.0195 10.7253 26 9 5.0081 -1.5012 11.9119 27 6 4.2089 0.3101 10.6114 28 6 3.7679 0.8038 9.3989 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6101 -0.0383 -2.7862 35 1 3.7774 1.1683 -1.7768 36 1 5.2357 0.3506 -1.1658 37 1 6.9765 -1.8268 -2.0264 38 1 2.2490 -1.6319 1.1524 39 1 1.9777 -1.5511 3.8323 40 1 3.6493 -1.1206 3.3977 41 1 3.3744 1.0764 4.5132 42 1 1.7029 0.6466 4.9482 43 1 2.5391 -1.2888 6.2528 44 1 4.2110 -0.8595 5.8182 45 1 4.0000 -2.0199 7.5543 46 1 4.7936 -2.8930 9.7146 47 1 4.2659 0.9616 11.4709 48 1 3.4797 1.8409 9.3104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716036855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:15 Heat of formation + Delta-G solvation = -82.001869 kcal Electronic energy + Delta-G solvation = -28573.941841 eV Core-core repulsion = 24351.274888 eV Total energy + Delta-G solvation = -4222.666953 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.10084 -40.40631 -39.39340 -37.63420 -36.49078 -34.17417 -33.71837 -31.62219 -31.41981 -30.27229 -29.61945 -27.16957 -26.21737 -25.67533 -23.84831 -22.78612 -22.05361 -21.46804 -20.22002 -19.81056 -18.60326 -17.70002 -17.14960 -16.80655 -16.61083 -16.22467 -15.81920 -15.61987 -15.18916 -15.04056 -14.93112 -14.51704 -13.98319 -13.88190 -13.62983 -13.50712 -13.29586 -13.07258 -12.98310 -12.81717 -12.47863 -12.23271 -12.07845 -11.89395 -11.65209 -11.61640 -11.33723 -11.08596 -11.03580 -10.93286 -10.88949 -10.70737 -10.43269 -10.33622 -10.05739 -9.92774 -9.55761 -9.38062 -8.61280 -8.45038 -8.41368 -6.87121 -5.80141 -3.21922 0.79261 0.88337 2.80092 3.10621 3.22723 3.29103 3.32420 3.38333 3.76949 3.98679 4.31916 4.39873 4.41638 4.71405 4.74067 4.77273 4.91689 4.96316 5.10769 5.25505 5.26455 5.31189 5.40120 5.43588 5.51370 5.57340 5.64943 5.76711 5.78940 5.81066 5.88906 5.90706 6.01471 6.10964 6.16074 6.18664 6.37273 6.42789 6.42973 6.73484 6.79316 7.07666 7.11476 7.39555 7.59057 7.75290 8.10301 8.28355 8.74868 9.14509 9.79261 10.27541 11.24787 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002281 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.541029 B =12274.207939 C =13991.648481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.601 5.601 6 C 0.165 3.835 7 C -0.249 4.249 8 H 0.067 0.933 9 C -0.001 4.001 10 N -0.905 5.905 11 Si 0.900 3.100 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.290 1.290 15 N -0.695 5.695 16 C 0.514 3.486 17 O -0.559 6.559 18 C -0.140 4.140 19 C -0.100 4.100 20 C 0.057 3.943 21 O -0.308 6.308 22 C 0.128 3.872 23 C -0.183 4.183 24 C -0.111 4.111 25 C 0.053 3.947 26 F -0.143 7.143 27 C -0.113 4.113 28 C -0.126 4.126 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.026 0.974 35 H -0.005 1.005 36 H 0.048 0.952 37 H 0.252 0.748 38 H 0.403 0.597 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.140 0.860 46 H 0.138 0.862 47 H 0.141 0.859 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.181 0.510 18.749 20.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.324 5.324 6 C 0.021 3.979 7 C -0.378 4.378 8 H 0.085 0.915 9 C -0.199 4.199 10 N -0.550 5.550 11 Si 0.730 3.270 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.217 1.217 15 N -0.346 5.346 16 C 0.300 3.700 17 O -0.438 6.438 18 C -0.180 4.180 19 C -0.138 4.138 20 C -0.018 4.018 21 O -0.222 6.222 22 C 0.081 3.919 23 C -0.201 4.201 24 C -0.130 4.130 25 C 0.033 3.967 26 F -0.122 7.122 27 C -0.132 4.132 28 C -0.145 4.145 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.014 0.986 36 H 0.066 0.934 37 H 0.062 0.938 38 H 0.239 0.761 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.237 1.492 18.661 20.071 hybrid contribution 0.974 -1.537 0.628 1.925 sum -6.263 -0.045 19.289 20.280 Atomic orbital electron populations 1.22120 0.96591 1.01361 1.01639 1.21854 0.92134 0.98316 0.86758 0.90525 1.21048 0.86009 0.98218 0.93423 1.43894 0.98924 1.21445 1.68091 1.20799 0.93063 0.86073 0.97995 1.19071 0.94080 1.03994 1.20688 0.91482 1.24919 0.98204 0.99225 0.97544 1.70115 1.10886 1.45829 1.28188 0.86268 0.80059 0.80588 0.80068 1.20402 1.21772 1.21665 1.45934 1.65364 1.14372 1.08885 1.20301 0.77680 0.87232 0.84769 1.90651 1.51535 1.16104 1.85508 1.21521 1.03927 0.99245 0.93335 1.21199 1.03710 0.98533 0.90365 1.22970 1.01475 0.92099 0.85255 1.86110 1.80419 1.39259 1.16377 1.19074 0.94443 0.92094 0.86242 1.21202 1.04963 0.95048 0.98922 1.20961 1.00135 1.00378 0.91530 1.17583 1.04199 0.93105 0.81773 1.91489 1.87817 1.88541 1.44355 1.20956 0.99799 0.93945 0.98480 1.20318 1.03582 1.00594 0.89997 0.92938 0.92918 0.92145 0.93017 0.93100 0.95573 0.98617 0.93353 0.93765 0.76106 0.89086 0.88338 0.89856 0.90120 0.91722 0.91510 0.84244 0.84458 0.84103 0.84038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 2 C 0.12 2.00 2.88 -67.93 -0.20 1.81 16 3 H 0.08 1.51 7.58 -51.93 -0.39 1.11 16 4 C 0.14 2.64 5.30 -4.04 -0.02 2.62 16 5 N -0.60 -14.01 2.83 -181.11 -0.51 -14.52 16 6 C 0.17 4.00 8.97 59.85 0.54 4.54 16 7 C -0.25 -6.15 8.80 -15.06 -0.13 -6.28 16 8 H 0.07 1.54 6.40 -52.49 -0.34 1.20 16 9 C 0.00 -0.02 5.09 -17.43 -0.09 -0.11 16 10 N -0.90 -25.41 10.45 55.49 0.58 -24.83 16 11 Si 0.90 20.41 29.58 -169.99 -5.03 15.39 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 15 N -0.70 -11.56 4.49 -53.81 -0.24 -11.80 16 16 C 0.51 8.50 7.79 -10.98 -0.09 8.41 16 17 O -0.56 -11.03 15.64 5.56 0.09 -10.94 16 18 C -0.14 -1.71 5.70 -27.88 -0.16 -1.87 16 19 C -0.10 -1.19 4.87 -26.73 -0.13 -1.32 16 20 C 0.06 0.56 4.74 37.15 0.18 0.73 16 21 O -0.31 -3.49 10.14 -19.58 -0.20 -3.69 16 22 C 0.13 1.31 6.69 -39.24 -0.26 1.05 16 23 C -0.18 -1.66 9.04 -39.44 -0.36 -2.02 16 24 C -0.11 -0.98 10.02 -39.53 -0.40 -1.38 16 25 C 0.05 0.50 7.30 -39.42 -0.29 0.21 16 26 F -0.14 -1.46 17.27 2.25 0.04 -1.43 16 27 C -0.11 -0.96 10.02 -39.54 -0.40 -1.35 16 28 C -0.13 -1.15 9.98 -39.44 -0.39 -1.54 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.91 8.07 -51.93 -0.42 0.49 16 33 H 0.05 0.92 8.04 -51.93 -0.42 0.50 16 34 H 0.03 0.68 7.51 -51.93 -0.39 0.29 16 35 H 0.00 -0.10 8.04 -51.93 -0.42 -0.52 16 36 H 0.05 1.28 6.95 -51.93 -0.36 0.92 16 37 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 38 H 0.40 6.48 6.58 -40.82 -0.27 6.21 16 39 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 41 H 0.08 1.14 8.10 -51.93 -0.42 0.72 16 42 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 43 H 0.06 0.52 7.65 -51.93 -0.40 0.12 16 44 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 45 H 0.14 1.04 6.30 -52.49 -0.33 0.71 16 46 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 47 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -30.91 398.57 -8.59 -39.50 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -7.49 Total: 4.68 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -1.84 Total: 1.64 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.17 Total: -51.15 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.11 Total: -14.64 kcal Atomic # 9 Polarization: -1.46 SS G_CDS: 0.04 Total: -1.43 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.91 -8.59 -39.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716036855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.501 kcal (2) G-P(sol) polarization free energy of solvation -30.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds