Wall clock time and date at job start Tue Mar 31 2020 20:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47054 * 2 1 4 4 C 1.53005 * 109.46797 * 240.00674 * 2 1 3 5 5 N 1.46503 * 109.47129 * 184.99989 * 4 2 1 6 6 C 1.46499 * 119.99978 * 269.72453 * 5 4 2 7 7 C 1.36939 * 119.99922 * 89.99236 * 5 4 2 8 8 H 1.08002 * 120.00365 * 342.71157 * 7 5 4 9 9 C 1.38816 * 119.99872 * 162.70845 * 7 5 4 10 10 N 1.31620 * 119.99703 * 345.44197 * 9 7 5 11 11 Si 1.86799 * 120.00064 * 165.44166 * 9 7 5 12 12 H 1.48499 * 109.46835 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47196 * 120.00047 * 11 9 7 14 14 H 1.48496 * 109.46925 * 240.00214 * 11 9 7 15 15 N 1.46493 * 109.47317 * 120.00575 * 2 1 3 16 16 C 1.34781 * 119.99905 * 274.99989 * 15 2 1 17 17 O 1.21278 * 120.00082 * 359.97438 * 16 15 2 18 18 C 1.50701 * 119.99943 * 180.02562 * 16 15 2 19 19 C 1.52999 * 109.47113 * 179.97438 * 18 16 15 20 20 C 1.52995 * 109.47283 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47271 * 179.97438 * 20 19 18 22 22 C 1.35949 * 117.00315 * 179.97438 * 21 20 19 23 23 C 1.38708 * 120.02657 * 359.72243 * 22 21 20 24 24 C 1.38152 * 119.97079 * 179.79332 * 23 22 21 25 25 C 1.38461 * 120.02606 * 0.48468 * 24 23 22 26 26 F 1.35103 * 119.96906 * 179.72621 * 25 24 23 27 27 C 1.38453 * 120.06024 * 359.74520 * 25 24 23 28 28 C 1.38147 * 120.02955 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.47386 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47147 * 299.99770 * 1 2 3 31 31 H 1.08997 * 109.47591 * 59.99720 * 1 2 3 32 32 H 1.08993 * 109.47600 * 64.99472 * 4 2 1 33 33 H 1.09001 * 109.46815 * 304.99464 * 4 2 1 34 34 H 1.09001 * 109.46994 * 265.36631 * 6 5 4 35 35 H 1.09005 * 109.46793 * 25.36117 * 6 5 4 36 36 H 1.08997 * 109.47032 * 145.36371 * 6 5 4 37 37 H 0.97002 * 119.99714 * 180.02562 * 10 9 7 38 38 H 0.97006 * 120.00123 * 94.99624 * 15 2 1 39 39 H 1.09004 * 109.46705 * 299.99553 * 18 16 15 40 40 H 1.08999 * 109.47680 * 59.99519 * 18 16 15 41 41 H 1.09006 * 109.46798 * 299.99908 * 19 18 16 42 42 H 1.08999 * 109.47222 * 59.99260 * 19 18 16 43 43 H 1.09006 * 109.47202 * 299.99751 * 20 19 18 44 44 H 1.08999 * 109.47522 * 59.99534 * 20 19 18 45 45 H 1.08001 * 120.01933 * 359.97438 * 23 22 21 46 46 H 1.07997 * 119.98718 * 180.21000 * 24 23 22 47 47 H 1.08001 * 119.98417 * 180.02562 * 27 25 24 48 48 H 1.08000 * 120.01703 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2494 5 7 3.5000 -0.8263 -1.1908 6 6 4.3342 0.2312 -1.7668 7 6 4.0849 -1.9158 -0.6025 8 1 3.5078 -2.5498 0.0544 9 6 5.4196 -2.2055 -0.8506 10 7 6.0439 -1.6241 -1.8529 11 14 6.3296 -3.4205 0.2381 12 1 5.4102 -3.9303 1.2869 13 1 6.8181 -4.5547 -0.5867 14 1 7.4840 -2.7418 0.8798 15 7 2.0183 -0.6907 1.1960 16 6 2.1471 -0.0184 2.3571 17 8 1.8591 1.1584 2.4116 18 6 2.6500 -0.7288 3.5873 19 6 2.7020 0.2543 4.7585 20 6 3.2119 -0.4670 6.0076 21 8 3.2611 0.4514 7.1013 22 6 3.6953 -0.0330 8.2951 23 6 4.0607 -1.3660 8.4117 24 6 4.5059 -1.8560 9.6243 25 6 4.5778 -1.0195 10.7253 26 9 5.0081 -1.5012 11.9119 27 6 4.2089 0.3101 10.6114 28 6 3.7679 0.8038 9.3989 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.7515 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6101 -0.0383 -2.7862 35 1 3.7774 1.1683 -1.7768 36 1 5.2357 0.3506 -1.1658 37 1 6.9765 -1.8268 -2.0264 38 1 2.2490 -1.6319 1.1524 39 1 1.9777 -1.5511 3.8323 40 1 3.6493 -1.1206 3.3977 41 1 3.3744 1.0764 4.5132 42 1 1.7029 0.6466 4.9482 43 1 2.5391 -1.2888 6.2528 44 1 4.2110 -0.8595 5.8182 45 1 4.0000 -2.0199 7.5543 46 1 4.7936 -2.8930 9.7146 47 1 4.2659 0.9616 11.4709 48 1 3.4797 1.8409 9.3104 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716036855.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:14 Heat of formation + Delta-G solvation = -99.239634 kcal Electronic energy + Delta-G solvation = -28574.689326 eV Core-core repulsion = 24351.274888 eV Total energy + Delta-G solvation = -4223.414439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.83443 -41.15277 -40.68814 -38.40835 -38.04079 -35.75601 -34.76232 -33.13248 -32.25734 -31.69788 -30.38977 -28.12898 -28.00086 -27.35975 -24.65427 -23.73881 -23.30584 -22.54784 -21.56054 -21.15068 -19.35044 -18.78379 -18.39041 -17.89429 -17.44003 -17.37041 -16.95656 -16.92175 -16.56166 -16.12359 -15.71568 -15.55373 -15.36311 -14.99017 -14.80593 -14.58202 -14.53819 -14.39348 -14.02821 -13.81878 -13.54950 -13.48054 -13.18043 -13.11915 -12.99417 -12.77567 -12.65905 -12.51782 -12.44721 -12.19666 -12.16731 -11.94988 -11.84908 -11.74063 -11.72924 -11.52871 -10.72842 -10.57266 -10.20275 -9.82475 -9.13154 -8.78802 -7.76261 -5.19454 0.14709 0.18051 1.50650 1.51708 1.61263 1.82368 2.01830 2.54879 2.55211 2.60250 3.31312 3.38638 3.65321 3.70959 3.79311 3.82239 3.93025 4.05013 4.10061 4.14336 4.26749 4.37071 4.40670 4.44494 4.46915 4.55212 4.64318 4.71605 4.77485 4.85071 4.89649 4.91631 5.02108 5.07630 5.10973 5.12884 5.19089 5.20350 5.26280 5.33718 5.47000 5.62596 5.69879 5.72831 5.80764 6.33888 6.36180 6.80065 7.17568 7.47046 7.90938 8.36590 9.28706 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012173 B = 0.002281 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.541029 B =12274.207939 C =13991.648481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.046 0.954 4 C 0.142 3.858 5 N -0.615 5.615 6 C 0.181 3.819 7 C -0.237 4.237 8 H 0.091 0.909 9 C -0.066 4.066 10 N -0.946 5.946 11 Si 0.960 3.040 12 H -0.246 1.246 13 H -0.302 1.302 14 H -0.304 1.304 15 N -0.696 5.696 16 C 0.506 3.494 17 O -0.597 6.597 18 C -0.131 4.131 19 C -0.094 4.094 20 C 0.059 3.941 21 O -0.328 6.328 22 C 0.110 3.890 23 C -0.184 4.184 24 C -0.114 4.114 25 C 0.036 3.964 26 F -0.150 7.150 27 C -0.111 4.111 28 C -0.135 4.135 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.002 0.998 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.242 0.758 38 H 0.407 0.593 39 H 0.128 0.872 40 H 0.106 0.894 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.077 0.923 45 H 0.157 0.843 46 H 0.155 0.845 47 H 0.161 0.839 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.669 -1.275 20.369 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.016 3.984 3 H 0.064 0.936 4 C 0.015 3.985 5 N -0.338 5.338 6 C 0.036 3.964 7 C -0.367 4.367 8 H 0.108 0.892 9 C -0.260 4.260 10 N -0.595 5.595 11 Si 0.789 3.211 12 H -0.169 1.169 13 H -0.230 1.230 14 H -0.231 1.231 15 N -0.347 5.347 16 C 0.294 3.706 17 O -0.480 6.480 18 C -0.171 4.171 19 C -0.132 4.132 20 C -0.015 4.015 21 O -0.242 6.242 22 C 0.064 3.936 23 C -0.203 4.203 24 C -0.132 4.132 25 C 0.017 3.983 26 F -0.129 7.129 27 C -0.130 4.130 28 C -0.153 4.153 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.020 0.980 35 H 0.035 0.965 36 H 0.035 0.965 37 H 0.052 0.948 38 H 0.244 0.756 39 H 0.146 0.854 40 H 0.124 0.876 41 H 0.074 0.926 42 H 0.089 0.911 43 H 0.108 0.892 44 H 0.095 0.905 45 H 0.175 0.825 46 H 0.173 0.827 47 H 0.178 0.822 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.780 -0.315 20.307 22.126 hybrid contribution 1.357 -0.912 0.105 1.638 sum -7.424 -1.227 20.412 21.755 Atomic orbital electron populations 1.22001 0.93805 1.02681 1.02019 1.21618 0.94164 0.96288 0.86308 0.93609 1.21233 0.83253 0.99398 0.94631 1.44143 1.00866 1.20862 1.67943 1.20477 0.92500 0.87439 0.96008 1.19580 0.94055 1.03490 1.19609 0.89163 1.25729 0.99528 1.01683 0.99025 1.70299 1.10507 1.48261 1.30413 0.85292 0.78811 0.78006 0.78972 1.16891 1.23024 1.23141 1.45970 1.65324 1.14512 1.08860 1.21068 0.76830 0.86923 0.85787 1.90636 1.53187 1.17959 1.86173 1.21527 1.04849 0.99670 0.91057 1.21075 1.02582 0.98011 0.91544 1.22969 1.02542 0.92002 0.84016 1.86070 1.80870 1.40210 1.17029 1.19314 0.95238 0.92935 0.86075 1.21394 1.04512 0.94795 0.99578 1.21195 0.99621 1.01219 0.91194 1.17841 1.04828 0.93766 0.81840 1.91471 1.87988 1.88659 1.44769 1.21169 0.98935 0.93953 0.98922 1.20524 1.03617 1.01140 0.90030 0.91071 0.93752 0.90602 0.91973 0.91647 0.98014 0.96514 0.96463 0.94849 0.75562 0.85417 0.87617 0.92555 0.91103 0.89247 0.90515 0.82519 0.82746 0.82187 0.83150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.48 71.98 0.68 -3.05 16 2 C 0.12 4.04 2.88 44.99 0.13 4.17 16 3 H 0.05 1.79 7.58 -2.39 -0.02 1.77 16 4 C 0.14 5.00 5.30 86.38 0.46 5.46 16 5 N -0.62 -28.18 2.83 -726.92 -2.05 -30.23 16 6 C 0.18 8.91 8.97 127.77 1.15 10.06 16 7 C -0.24 -11.38 8.80 84.03 0.74 -10.64 16 8 H 0.09 3.84 6.40 -2.91 -0.02 3.82 16 9 C -0.07 -3.44 5.09 84.86 0.43 -3.01 16 10 N -0.95 -54.46 10.45 21.65 0.23 -54.23 16 11 Si 0.96 41.42 29.58 68.60 2.03 43.45 16 12 H -0.25 -9.15 7.11 99.48 0.71 -8.45 16 13 H -0.30 -13.52 7.11 99.48 0.71 -12.82 16 14 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 15 N -0.70 -21.74 4.49 -442.54 -1.99 -23.72 16 16 C 0.51 16.04 7.79 87.66 0.68 16.72 16 17 O -0.60 -23.61 15.64 -3.02 -0.05 -23.65 16 18 C -0.13 -2.87 5.70 29.85 0.17 -2.70 16 19 C -0.09 -2.11 4.87 30.59 0.15 -1.96 16 20 C 0.06 1.02 4.74 71.98 0.34 1.37 16 21 O -0.33 -7.03 10.14 -92.97 -0.94 -7.98 16 22 C 0.11 2.10 6.69 22.49 0.15 2.25 16 23 C -0.18 -2.94 9.04 22.36 0.20 -2.74 16 24 C -0.11 -1.78 10.02 22.30 0.22 -1.56 16 25 C 0.04 0.64 7.30 22.37 0.16 0.80 16 26 F -0.15 -2.89 17.27 44.97 0.78 -2.12 16 27 C -0.11 -1.73 10.02 22.30 0.22 -1.51 16 28 C -0.13 -2.29 9.98 22.36 0.22 -2.07 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 33 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 34 H 0.00 0.08 7.51 -2.39 -0.02 0.07 16 35 H 0.02 0.72 8.04 -2.38 -0.02 0.70 16 36 H 0.02 0.92 6.95 -2.39 -0.02 0.90 16 37 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 38 H 0.41 11.84 6.58 -92.70 -0.61 11.23 16 39 H 0.13 1.88 8.14 -2.38 -0.02 1.86 16 40 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 1.55 8.10 -2.38 -0.02 1.53 16 42 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 43 H 0.09 1.11 7.65 -2.38 -0.02 1.09 16 44 H 0.08 1.18 7.67 -2.39 -0.02 1.16 16 45 H 0.16 1.85 6.30 -2.91 -0.02 1.83 16 46 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 47 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 48 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -68.51 398.57 4.47 -64.04 By element: Atomic # 1 Polarization: 22.49 SS G_CDS: 0.35 Total: 22.84 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 6.12 Total: 11.59 kcal Atomic # 7 Polarization: -104.37 SS G_CDS: -3.81 Total: -108.19 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.99 Total: -31.63 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.12 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -68.51 4.47 -64.04 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716036855.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.196 kcal (2) G-P(sol) polarization free energy of solvation -68.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.044 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds