Wall clock time and date at job start Tue Mar 31 2020 20:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09005 * 109.47216 * 2 1 4 4 C 1.52997 * 109.47040 * 120.00627 * 2 1 3 5 5 N 1.46506 * 109.46773 * 174.99969 * 4 2 1 6 6 C 1.46500 * 119.99616 * 269.99695 * 5 4 2 7 7 C 1.36928 * 120.00077 * 90.00144 * 5 4 2 8 8 H 1.07996 * 120.00347 * 23.60911 * 7 5 4 9 9 C 1.38814 * 120.00014 * 203.61197 * 7 5 4 10 10 N 1.31620 * 119.99796 * 11.31847 * 9 7 5 11 11 Si 1.86794 * 120.00272 * 191.31948 * 9 7 5 12 12 H 1.48500 * 109.47255 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47441 * 119.99822 * 11 9 7 14 14 H 1.48501 * 109.47226 * 240.00199 * 11 9 7 15 15 N 1.46507 * 109.46631 * 240.00475 * 2 1 3 16 16 C 1.34777 * 119.99991 * 85.00305 * 15 2 1 17 17 O 1.21286 * 119.99739 * 359.97438 * 16 15 2 18 18 C 1.50698 * 120.00172 * 179.97438 * 16 15 2 19 19 C 1.52999 * 109.47186 * 179.97438 * 18 16 15 20 20 C 1.53007 * 109.46923 * 179.97438 * 19 18 16 21 21 O 1.42901 * 109.46902 * 180.02562 * 20 19 18 22 22 C 1.35949 * 116.99611 * 180.02562 * 21 20 19 23 23 C 1.38699 * 120.03123 * 359.72509 * 22 21 20 24 24 C 1.38158 * 119.96841 * 179.79158 * 23 22 21 25 25 C 1.38449 * 120.02863 * 0.48237 * 24 23 22 26 26 F 1.35097 * 119.97231 * 179.72269 * 25 24 23 27 27 C 1.38459 * 120.06106 * 359.74544 * 25 24 23 28 28 C 1.38144 * 120.02957 * 0.02562 * 27 25 24 29 29 H 1.08999 * 109.46519 * 299.99846 * 1 2 3 30 30 H 1.09002 * 109.46877 * 59.98959 * 1 2 3 31 31 H 1.08998 * 109.47344 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47130 * 294.99640 * 4 2 1 33 33 H 1.09000 * 109.47269 * 54.99841 * 4 2 1 34 34 H 1.09002 * 109.46985 * 94.53795 * 6 5 4 35 35 H 1.09007 * 109.47222 * 214.53138 * 6 5 4 36 36 H 1.08997 * 109.47387 * 334.53066 * 6 5 4 37 37 H 0.97002 * 119.99925 * 180.02562 * 10 9 7 38 38 H 0.96993 * 119.99857 * 264.99489 * 15 2 1 39 39 H 1.08998 * 109.47337 * 59.99642 * 18 16 15 40 40 H 1.09004 * 109.46944 * 299.99793 * 18 16 15 41 41 H 1.08995 * 109.47375 * 60.00130 * 19 18 16 42 42 H 1.08999 * 109.47211 * 299.99325 * 19 18 16 43 43 H 1.08995 * 109.46892 * 59.99953 * 20 19 18 44 44 H 1.08999 * 109.46724 * 299.99743 * 20 19 18 45 45 H 1.08006 * 120.01662 * 359.97438 * 23 22 21 46 46 H 1.07997 * 119.98216 * 180.20352 * 24 23 22 47 47 H 1.08001 * 119.98521 * 179.97438 * 27 25 24 48 48 H 1.07998 * 120.01972 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5001 -0.8265 1.1904 6 6 4.1258 -1.9920 0.5609 7 6 4.2799 0.1646 1.7239 8 1 3.8835 0.8068 2.4964 9 6 5.5800 0.3440 1.2717 10 7 5.9918 -0.2795 0.1882 11 14 6.7451 1.4702 2.2010 12 1 6.0437 2.0477 3.3756 13 1 7.9238 0.6927 2.6607 14 1 7.1938 2.5663 1.3051 15 7 2.0183 -0.6906 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6498 -0.7282 -3.5876 19 6 2.7005 0.2548 -4.7589 20 6 3.2116 -0.4661 -6.0080 21 8 3.2596 0.4522 -7.1018 22 6 3.6945 -0.0319 -8.2954 23 6 4.0725 -1.3615 -8.4090 24 6 4.5103 -1.8532 -9.6236 25 6 4.5812 -1.0169 -10.7247 26 9 5.0148 -1.4975 -11.9105 27 6 4.2087 0.3118 -10.6115 28 6 3.7661 0.8049 -9.3993 29 1 -0.3632 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7517 -0.1585 2.1369 33 1 1.6054 -1.7199 1.2950 34 1 4.3532 -1.7642 -0.4805 35 1 5.0473 -2.2390 1.0883 36 1 3.4427 -2.8401 0.6066 37 1 6.9005 -0.1545 -0.1276 38 1 2.2490 -1.6316 -1.1528 39 1 1.9776 -1.5505 -3.8328 40 1 3.6491 -1.1201 -3.3981 41 1 3.3725 1.0773 -4.5141 42 1 1.7010 0.6462 -4.9484 43 1 2.5399 -1.2888 -6.2530 44 1 4.2112 -0.8572 -5.8183 45 1 4.0219 -2.0130 -7.5490 46 1 4.8015 -2.8893 -9.7131 47 1 4.2649 0.9633 -11.4711 48 1 3.4759 1.8415 -9.3112 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716036856.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:19 Heat of formation + Delta-G solvation = -102.204271 kcal Electronic energy + Delta-G solvation = -28610.736084 eV Core-core repulsion = 24387.193089 eV Total energy + Delta-G solvation = -4223.542995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -49.82763 -41.15039 -40.68121 -38.40050 -38.01459 -35.74923 -34.77238 -33.08068 -32.25595 -31.80120 -30.38861 -28.11426 -27.90716 -27.37588 -24.66037 -23.73149 -23.26437 -22.52039 -21.63479 -21.12799 -19.32768 -18.75703 -18.45536 -17.99631 -17.43863 -17.41410 -17.05250 -16.66777 -16.53791 -16.13938 -15.70896 -15.53209 -15.37128 -15.19222 -14.80560 -14.58537 -14.43586 -14.41022 -14.01890 -13.77333 -13.57676 -13.45786 -13.14983 -13.10380 -13.00477 -12.80816 -12.64021 -12.50453 -12.44963 -12.27851 -12.18173 -12.01047 -11.80886 -11.73830 -11.67532 -11.53375 -10.74792 -10.61825 -10.19561 -9.84146 -9.12585 -8.69223 -7.81378 -5.26664 0.15416 0.18732 1.42293 1.45610 1.53282 1.83426 2.02910 2.50062 2.55800 2.60956 3.31861 3.32833 3.65901 3.73466 3.79968 3.82418 3.92307 4.03833 4.11096 4.19128 4.28130 4.37991 4.40065 4.45336 4.46983 4.57900 4.63827 4.71266 4.79427 4.88128 4.90233 4.94727 5.03364 5.07263 5.11414 5.13270 5.19143 5.24055 5.26182 5.40282 5.41803 5.67225 5.70738 5.78613 5.84084 6.36493 6.37014 6.78499 7.20245 7.48889 7.92301 8.32202 9.20582 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013238 B = 0.002104 C = 0.001941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.621409 B =13304.530447 C =14425.378181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.122 3.878 3 H 0.032 0.968 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.258 4.258 8 H 0.063 0.937 9 C -0.049 4.049 10 N -0.926 5.926 11 Si 0.956 3.044 12 H -0.270 1.270 13 H -0.289 1.289 14 H -0.301 1.301 15 N -0.695 5.695 16 C 0.506 3.494 17 O -0.601 6.601 18 C -0.125 4.125 19 C -0.095 4.095 20 C 0.062 3.938 21 O -0.330 6.330 22 C 0.109 3.891 23 C -0.183 4.183 24 C -0.112 4.112 25 C 0.037 3.963 26 F -0.149 7.149 27 C -0.111 4.111 28 C -0.136 4.136 29 H 0.072 0.928 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.016 0.984 35 H 0.009 0.991 36 H 0.038 0.962 37 H 0.244 0.756 38 H 0.406 0.594 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.047 0.953 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.076 0.924 45 H 0.159 0.841 46 H 0.157 0.843 47 H 0.160 0.840 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.396 -7.706 -17.141 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.014 3.986 3 H 0.050 0.950 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.028 3.972 7 C -0.388 4.388 8 H 0.081 0.919 9 C -0.244 4.244 10 N -0.573 5.573 11 Si 0.786 3.214 12 H -0.194 1.194 13 H -0.216 1.216 14 H -0.229 1.229 15 N -0.344 5.344 16 C 0.294 3.706 17 O -0.483 6.483 18 C -0.165 4.165 19 C -0.133 4.133 20 C -0.012 4.012 21 O -0.244 6.244 22 C 0.063 3.937 23 C -0.202 4.202 24 C -0.131 4.131 25 C 0.018 3.982 26 F -0.128 7.128 27 C -0.130 4.130 28 C -0.155 4.155 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.035 0.965 35 H 0.028 0.972 36 H 0.056 0.944 37 H 0.053 0.947 38 H 0.241 0.759 39 H 0.151 0.849 40 H 0.121 0.879 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.176 0.824 46 H 0.175 0.825 47 H 0.178 0.822 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.491 -6.738 -17.168 20.304 hybrid contribution 1.390 0.470 0.342 1.506 sum -7.101 -6.268 -16.827 19.309 Atomic orbital electron populations 1.22008 0.93802 1.02839 1.01713 1.21617 0.93942 0.96287 0.86764 0.94993 1.21357 0.83281 0.99244 0.94546 1.44085 1.00832 1.20472 1.68017 1.20659 0.94251 0.86022 0.96236 1.19460 0.95041 1.10561 1.13776 0.91878 1.25635 1.00410 1.00896 0.97484 1.70161 1.16819 1.47082 1.23219 0.85366 0.79398 0.78459 0.78208 1.19441 1.21599 1.22854 1.45781 1.65683 1.14066 1.08917 1.21128 0.76610 0.86897 0.85998 1.90636 1.53134 1.18247 1.86246 1.21480 1.04680 0.99574 0.90774 1.21073 1.02348 0.98011 0.91876 1.22941 1.02539 0.91926 0.83798 1.86076 1.80860 1.40355 1.17111 1.19332 0.95251 0.93070 0.86002 1.21399 1.04424 0.94763 0.99594 1.21198 0.99586 1.01242 0.91063 1.17827 1.04753 0.93725 0.81917 1.91469 1.87862 1.88678 1.44825 1.21161 0.98946 0.94048 0.98844 1.20521 1.03721 1.01070 0.90148 0.90879 0.94249 0.90380 0.92245 0.90433 0.96530 0.97201 0.94387 0.94683 0.75865 0.84922 0.87876 0.93372 0.91136 0.88861 0.90566 0.82392 0.82547 0.82220 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.48 71.98 0.68 -3.27 16 2 C 0.12 4.34 2.88 44.99 0.13 4.47 16 3 H 0.03 1.48 7.58 -2.38 -0.02 1.46 16 4 C 0.14 5.08 5.33 86.38 0.46 5.54 16 5 N -0.61 -28.02 2.78 -726.94 -2.02 -30.03 16 6 C 0.17 7.48 7.61 127.77 0.97 8.45 16 7 C -0.26 -13.77 9.66 84.04 0.81 -12.96 16 8 H 0.06 3.36 7.85 -2.91 -0.02 3.34 16 9 C -0.05 -2.69 5.13 84.86 0.44 -2.25 16 10 N -0.93 -52.73 10.66 21.65 0.23 -52.49 16 11 Si 0.96 45.53 29.57 68.60 2.03 47.56 16 12 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 14 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 15 N -0.69 -23.07 4.41 -442.51 -1.95 -25.02 16 16 C 0.51 17.86 7.79 87.66 0.68 18.54 16 17 O -0.60 -26.82 15.65 -3.05 -0.05 -26.87 16 18 C -0.13 -3.04 5.70 29.85 0.17 -2.87 16 19 C -0.09 -2.42 4.87 30.60 0.15 -2.27 16 20 C 0.06 1.19 4.74 71.98 0.34 1.53 16 21 O -0.33 -7.71 10.14 -92.98 -0.94 -8.65 16 22 C 0.11 2.22 6.69 22.49 0.15 2.37 16 23 C -0.18 -3.05 9.04 22.36 0.20 -2.84 16 24 C -0.11 -1.80 10.02 22.30 0.22 -1.57 16 25 C 0.04 0.67 7.30 22.37 0.16 0.83 16 26 F -0.15 -2.93 17.27 44.97 0.78 -2.15 16 27 C -0.11 -1.83 10.02 22.30 0.22 -1.61 16 28 C -0.14 -2.49 9.98 22.36 0.22 -2.27 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 33 H 0.08 2.23 7.86 -2.39 -0.02 2.22 16 34 H 0.02 0.76 6.90 -2.39 -0.02 0.74 16 35 H 0.01 0.46 7.30 -2.38 -0.02 0.44 16 36 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 37 H 0.24 13.71 8.31 -92.71 -0.77 12.94 16 38 H 0.41 11.54 7.17 -92.71 -0.66 10.88 16 39 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 41 H 0.05 1.55 8.10 -2.39 -0.02 1.53 16 42 H 0.07 1.90 8.10 -2.39 -0.02 1.88 16 43 H 0.09 1.23 7.67 -2.39 -0.02 1.22 16 44 H 0.08 1.31 7.65 -2.39 -0.02 1.29 16 45 H 0.16 1.93 6.30 -2.91 -0.02 1.91 16 46 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 47 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 48 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -72.44 399.57 4.39 -68.05 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.29 Total: 19.78 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: 6.02 Total: 9.82 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.74 Total: -107.55 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.99 Total: -35.51 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.78 Total: -2.15 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -72.44 4.39 -68.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716036856.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.152 kcal (2) G-P(sol) polarization free energy of solvation -72.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds