Wall clock time and date at job start Tue Mar 31 2020 21:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47479 * 2 1 4 4 C 1.46493 * 120.00343 * 270.00034 * 3 2 1 5 5 C 1.53006 * 109.47071 * 270.00082 * 4 3 2 6 6 N 1.46503 * 109.47036 * 179.97438 * 5 4 3 7 7 C 1.36929 * 119.99870 * 179.97438 * 6 5 4 8 8 H 1.08000 * 120.00624 * 359.97438 * 7 6 5 9 9 C 1.38812 * 120.00036 * 180.02562 * 7 6 5 10 10 N 1.31618 * 120.00082 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 120.00356 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.46622 * 359.97438 * 11 9 7 13 13 H 1.48497 * 109.46978 * 119.99674 * 11 9 7 14 14 H 1.48495 * 109.47402 * 240.00081 * 11 9 7 15 15 C 1.34784 * 119.99674 * 90.00121 * 3 2 1 16 16 O 1.21281 * 119.99814 * 180.02562 * 15 3 2 17 17 C 1.50693 * 119.99868 * 359.97438 * 15 3 2 18 18 C 1.53002 * 109.47220 * 180.02562 * 17 15 3 19 19 C 1.50693 * 109.47599 * 180.02562 * 18 17 15 20 20 C 1.38295 * 119.98534 * 264.99749 * 19 18 17 21 21 C 1.38217 * 120.12691 * 179.97438 * 20 19 18 22 22 C 1.38218 * 120.09850 * 0.02562 * 21 20 19 23 23 C 1.38619 * 119.96784 * 359.97438 * 22 21 20 24 24 O 1.35958 * 120.06530 * 180.02562 * 23 22 21 25 25 C 1.42893 * 116.99813 * 359.97438 * 24 23 22 26 26 C 1.38293 * 119.98498 * 84.99683 * 19 18 17 27 27 F 1.35100 * 120.04859 * 0.28233 * 26 19 18 28 28 H 1.09003 * 109.47144 * 59.99619 * 1 2 3 29 29 H 1.08998 * 109.47833 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46857 * 300.00327 * 1 2 3 31 31 H 1.09003 * 109.46857 * 239.99673 * 2 1 3 32 32 H 1.09001 * 109.46973 * 120.00901 * 2 1 3 33 33 H 1.08999 * 109.47022 * 29.99843 * 4 3 2 34 34 H 1.08994 * 109.47274 * 149.99931 * 4 3 2 35 35 H 1.08999 * 109.47003 * 299.99773 * 5 4 3 36 36 H 1.09002 * 109.47010 * 60.00094 * 5 4 3 37 37 H 0.97005 * 120.00018 * 0.02562 * 6 5 4 38 38 H 0.96999 * 120.00132 * 179.97438 * 10 9 7 39 39 H 1.08999 * 109.47300 * 60.00188 * 17 15 3 40 40 H 1.08994 * 109.47369 * 299.99962 * 17 15 3 41 41 H 1.09003 * 109.47357 * 59.99674 * 18 17 15 42 42 H 1.09007 * 109.47079 * 300.00042 * 18 17 15 43 43 H 1.08000 * 119.93820 * 359.97438 * 20 19 18 44 44 H 1.08004 * 119.95534 * 179.97438 * 21 20 19 45 45 H 1.08005 * 120.01828 * 180.02562 * 22 21 20 46 46 H 1.08996 * 109.47200 * 300.00040 * 25 24 23 47 47 H 1.08998 * 109.47460 * 60.00264 * 25 24 23 48 48 H 1.09003 * 109.47092 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2686 5 6 3.7077 1.8313 -1.7103 6 7 3.9517 2.5215 -2.9793 7 6 5.1840 2.4492 -3.5720 8 1 5.9761 1.8838 -3.1039 9 6 5.4154 3.1036 -4.7741 10 7 4.4502 3.7931 -5.3446 11 14 7.0967 3.0056 -5.5824 12 1 8.0004 2.1756 -4.7459 13 1 6.9640 2.3916 -6.9280 14 1 7.6624 4.3722 -5.7155 15 6 2.2431 2.0164 1.1673 16 8 2.6470 3.1600 1.1673 17 6 1.9913 1.3062 2.4723 18 6 2.3223 2.2436 3.6353 19 6 2.0712 1.5332 4.9404 20 6 0.8610 1.6901 5.5910 21 6 0.6273 1.0395 6.7878 22 6 1.6029 0.2301 7.3388 23 6 2.8174 0.0700 6.6900 24 8 3.7782 -0.7261 7.2299 25 6 3.4688 -1.3671 8.4690 26 6 3.0510 0.7246 5.4868 27 9 4.2355 0.5756 4.8544 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3635 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 1.5818 1.6877 -2.0283 34 1 2.0957 3.1410 -1.1383 35 1 4.3885 2.2153 -0.9506 36 1 3.8745 0.7620 -1.8407 37 1 3.2406 3.0302 -3.3993 38 1 4.6120 4.2507 -6.1844 39 1 2.6211 0.4184 2.5302 40 1 0.9433 1.0125 2.5298 41 1 1.6922 3.1312 3.5773 42 1 3.3704 2.5377 3.5780 43 1 0.0969 2.3222 5.1631 44 1 -0.3187 1.1643 7.2938 45 1 1.4188 -0.2780 8.2739 46 1 3.2551 -0.6119 9.2253 47 1 2.5967 -2.0079 8.3388 48 1 4.3188 -1.9702 8.7882 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716219882.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:22 Heat of formation + Delta-G solvation = -109.286346 kcal Electronic energy + Delta-G solvation = -28854.898465 eV Core-core repulsion = 24631.048368 eV Total energy + Delta-G solvation = -4223.850097 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.84033 -41.22856 -40.88584 -38.76311 -37.57929 -36.39018 -34.89730 -33.58584 -31.59123 -31.26631 -30.81908 -29.13576 -28.17743 -26.32558 -25.14833 -24.20745 -23.54391 -23.18043 -22.02600 -20.04579 -19.23864 -19.07174 -18.19688 -18.08924 -17.82788 -17.40778 -17.12685 -16.67411 -16.47411 -16.04342 -15.74112 -15.52874 -15.41341 -15.39135 -15.18953 -14.91194 -14.60842 -14.55792 -14.18774 -13.86182 -13.65353 -13.49666 -13.13392 -13.01366 -12.97010 -12.93907 -12.79288 -12.63051 -12.48948 -12.31455 -12.17630 -12.11765 -12.02067 -11.94284 -11.89352 -11.80800 -11.02228 -10.87415 -9.75595 -9.73536 -9.21571 -9.09559 -8.00516 -5.31469 0.08762 0.26671 1.43907 1.46253 1.56246 1.60446 1.94054 2.20194 2.53137 2.57819 3.27450 3.32254 3.37879 3.78370 3.84381 3.94211 3.99925 4.02671 4.08383 4.14959 4.20165 4.25031 4.28304 4.38694 4.39353 4.41570 4.47530 4.53552 4.55816 4.61697 4.72860 4.86025 4.89399 4.96724 5.01110 5.05559 5.08008 5.08933 5.14546 5.33111 5.39962 5.41246 5.45173 5.56651 5.69289 6.21134 6.31821 6.41727 7.16587 7.27124 7.98244 8.24519 9.22950 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.016697 B = 0.002097 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.513707 B =13347.724936 C =14174.023161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.606 5.606 4 C 0.123 3.877 5 C 0.149 3.851 6 N -0.742 5.742 7 C -0.251 4.251 8 H 0.071 0.929 9 C -0.074 4.074 10 N -0.967 5.967 11 Si 0.979 3.021 12 H -0.269 1.269 13 H -0.285 1.285 14 H -0.291 1.291 15 C 0.505 3.495 16 O -0.586 6.586 17 C -0.118 4.118 18 C -0.063 4.063 19 C -0.081 4.081 20 C -0.124 4.124 21 C -0.076 4.076 22 C -0.182 4.182 23 C 0.083 3.917 24 O -0.341 6.341 25 C 0.017 3.983 26 C 0.033 3.967 27 F -0.153 7.153 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.093 0.907 34 H 0.060 0.940 35 H -0.003 1.003 36 H 0.028 0.972 37 H 0.376 0.624 38 H 0.254 0.746 39 H 0.101 0.899 40 H 0.130 0.870 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.157 0.843 44 H 0.169 0.831 45 H 0.165 0.835 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.943 -14.177 31.795 37.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.027 4.027 3 N -0.338 5.338 4 C 0.000 4.000 5 C 0.021 3.979 6 N -0.385 5.385 7 C -0.383 4.383 8 H 0.089 0.911 9 C -0.266 4.266 10 N -0.617 5.617 11 Si 0.807 3.193 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.218 1.218 15 C 0.295 3.705 16 O -0.466 6.466 17 C -0.158 4.158 18 C -0.101 4.101 19 C -0.082 4.082 20 C -0.142 4.142 21 C -0.094 4.094 22 C -0.201 4.201 23 C 0.037 3.963 24 O -0.255 6.255 25 C -0.077 4.077 26 C 0.013 3.987 27 F -0.132 7.132 28 H 0.067 0.933 29 H 0.110 0.890 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.118 0.882 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.015 0.985 36 H 0.046 0.954 37 H 0.208 0.792 38 H 0.063 0.937 39 H 0.119 0.881 40 H 0.148 0.852 41 H 0.109 0.891 42 H 0.073 0.927 43 H 0.175 0.825 44 H 0.186 0.814 45 H 0.183 0.817 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.321 -13.733 31.705 37.402 hybrid contribution 1.259 0.441 -1.027 1.684 sum -13.061 -13.292 30.678 35.894 Atomic orbital electron populations 1.22169 0.93964 1.03723 1.02392 1.21928 0.95900 0.80212 1.04696 1.48067 1.65216 1.15664 1.04841 1.21285 0.95574 0.97662 0.85517 1.20955 0.95105 0.95090 0.86767 1.42389 1.12066 1.61150 1.22943 1.19616 0.90277 1.25790 1.02621 0.91080 1.25646 1.01859 1.00332 0.98799 1.69823 1.33544 1.38425 1.19894 0.85000 0.79066 0.77122 0.78092 1.19300 1.21209 1.21848 1.21361 0.76198 0.86324 0.86633 1.90712 1.47379 1.20457 1.88060 1.21655 1.05990 0.99171 0.88966 1.20199 1.02676 0.97827 0.89366 1.19769 0.94053 0.97083 0.97276 1.21217 0.95594 1.01366 0.96002 1.21433 0.99811 0.93658 0.94465 1.21512 0.91931 1.03871 1.02738 1.19223 0.90569 0.93821 0.92709 1.86117 1.39756 1.59488 1.40138 1.23422 1.04390 0.97495 0.82361 1.17304 0.83616 1.04567 0.93216 1.91444 1.45139 1.94781 1.81786 0.93283 0.89036 0.91720 0.89938 0.88161 0.88840 0.92190 0.98536 0.95381 0.79190 0.93723 0.88086 0.85225 0.89052 0.92696 0.82540 0.81372 0.81731 0.91032 0.90768 0.86791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.24 71.98 0.74 -1.60 16 2 C 0.09 1.78 5.93 86.38 0.51 2.29 16 3 N -0.61 -17.33 2.47 -821.83 -2.03 -19.36 16 4 C 0.12 4.49 5.52 86.38 0.48 4.97 16 5 C 0.15 6.73 6.58 86.38 0.57 7.30 16 6 N -0.74 -41.00 5.60 -343.44 -1.92 -42.92 16 7 C -0.25 -15.06 9.99 84.03 0.84 -14.22 16 8 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 9 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 10 N -0.97 -61.19 13.06 21.65 0.28 -60.91 16 11 Si 0.98 48.10 29.55 68.60 2.03 50.13 16 12 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 14 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 15 C 0.50 15.49 7.67 87.65 0.67 16.16 16 16 O -0.59 -24.05 15.56 -3.03 -0.05 -24.10 16 17 C -0.12 -2.45 4.23 29.85 0.13 -2.33 16 18 C -0.06 -1.42 4.41 29.85 0.13 -1.29 16 19 C -0.08 -1.53 5.14 -19.84 -0.10 -1.63 16 20 C -0.12 -1.51 9.68 22.28 0.22 -1.29 16 21 C -0.08 -0.65 10.04 22.26 0.22 -0.43 16 22 C -0.18 -1.98 9.04 22.36 0.20 -1.78 16 23 C 0.08 1.54 6.69 22.53 0.15 1.69 16 24 O -0.34 -6.49 10.36 -93.08 -0.96 -7.45 16 25 C 0.02 0.13 9.81 113.37 1.11 1.25 16 26 C 0.03 0.75 7.25 22.45 0.16 0.91 16 27 F -0.15 -4.44 16.41 44.97 0.74 -3.70 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.82 7.22 -2.39 -0.02 0.80 16 31 H 0.08 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.10 1.45 6.44 -2.39 -0.02 1.44 16 33 H 0.09 3.05 8.07 -2.39 -0.02 3.04 16 34 H 0.06 2.48 7.42 -2.39 -0.02 2.47 16 35 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 36 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.38 21.59 7.67 -92.70 -0.71 20.88 16 38 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 39 H 0.10 1.99 7.40 -2.39 -0.02 1.97 16 40 H 0.13 1.77 7.18 -2.39 -0.02 1.75 16 41 H 0.09 1.98 8.01 -2.39 -0.02 1.96 16 42 H 0.05 1.58 7.74 -2.38 -0.02 1.57 16 43 H 0.16 1.21 8.06 -2.91 -0.02 1.19 16 44 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 45 H 0.17 0.75 6.30 -2.91 -0.02 0.73 16 46 H 0.07 0.34 7.66 -2.39 -0.02 0.32 16 47 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 48 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -83.24 401.88 4.83 -78.41 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: 0.26 Total: 23.89 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.50 Total: 6.01 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -3.67 Total: -123.19 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.01 Total: -31.55 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.74 Total: -3.70 kcal Atomic # 14 Polarization: 48.10 SS G_CDS: 2.03 Total: 50.13 kcal Total: -83.24 4.83 -78.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716219882.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.881 kcal (2) G-P(sol) polarization free energy of solvation -83.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds