Wall clock time and date at job start Tue Mar 31 2020 20:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.52987 * 109.46989 * 239.99517 * 2 1 3 5 5 N 1.46504 * 109.47201 * 184.99992 * 4 2 1 6 6 C 1.46503 * 120.00148 * 270.00026 * 5 4 2 7 7 C 1.36935 * 119.99856 * 90.00495 * 5 4 2 8 8 H 1.07998 * 120.00546 * 20.82561 * 7 5 4 9 9 C 1.38814 * 120.00087 * 200.83702 * 7 5 4 10 10 N 1.31628 * 119.99693 * 15.51636 * 9 7 5 11 11 Si 1.86795 * 120.00471 * 195.51893 * 9 7 5 12 12 H 1.48503 * 109.47261 * 89.99284 * 11 9 7 13 13 H 1.48496 * 109.47673 * 209.99751 * 11 9 7 14 14 H 1.48508 * 109.46708 * 329.99945 * 11 9 7 15 15 N 1.46508 * 109.47001 * 119.99735 * 2 1 3 16 16 C 1.34779 * 119.99580 * 275.00048 * 15 2 1 17 17 O 1.21273 * 120.00247 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99390 * 179.97438 * 16 15 2 19 19 H 1.09004 * 109.47673 * 305.00249 * 18 16 15 20 20 C 1.53004 * 109.47251 * 65.00110 * 18 16 15 21 21 O 1.42905 * 109.47286 * 184.99682 * 18 16 15 22 22 C 1.42896 * 114.00104 * 149.99761 * 21 18 16 23 23 C 1.50699 * 109.46975 * 180.02562 * 22 21 18 24 24 C 1.38246 * 119.97700 * 269.72757 * 23 22 21 25 25 C 1.38190 * 120.02553 * 179.72544 * 24 23 22 26 26 C 1.38458 * 119.97537 * 0.57429 * 25 24 23 27 27 F 1.35105 * 120.02700 * 179.68433 * 26 25 24 28 28 C 1.38464 * 119.94798 * 359.70193 * 26 25 24 29 29 C 1.38192 * 119.97084 * 359.97438 * 28 26 25 30 30 H 1.08994 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46864 * 300.00170 * 1 2 3 32 32 H 1.08996 * 109.47072 * 60.00040 * 1 2 3 33 33 H 1.08998 * 109.47562 * 305.00264 * 4 2 1 34 34 H 1.09003 * 109.47412 * 65.00259 * 4 2 1 35 35 H 1.09003 * 109.46465 * 93.93889 * 6 5 4 36 36 H 1.08988 * 109.47059 * 213.93462 * 6 5 4 37 37 H 1.09003 * 109.46877 * 333.94557 * 6 5 4 38 38 H 0.96999 * 119.99710 * 180.02562 * 10 9 7 39 39 H 0.96992 * 119.99612 * 94.99440 * 15 2 1 40 40 H 1.09008 * 109.46701 * 299.99928 * 20 18 16 41 41 H 1.08994 * 109.47222 * 59.99554 * 20 18 16 42 42 H 1.08996 * 109.47391 * 179.97438 * 20 18 16 43 43 H 1.08997 * 109.47300 * 300.00952 * 22 21 18 44 44 H 1.09008 * 109.46848 * 60.00383 * 22 21 18 45 45 H 1.08005 * 119.98379 * 359.97438 * 24 23 22 46 46 H 1.08006 * 120.01449 * 180.25754 * 25 24 23 47 47 H 1.07995 * 120.01030 * 179.97438 * 28 26 25 48 48 H 1.08003 * 119.98421 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3344 0.2339 -1.7613 7 6 4.0850 -1.9159 -0.6022 8 1 3.5256 -2.8325 -0.4864 9 6 5.3968 -1.8423 -0.1544 10 7 5.9779 -0.6701 -0.0096 11 14 6.3375 -3.4064 0.2428 12 1 7.0417 -3.8832 -0.9747 13 1 7.3299 -3.1294 1.3121 14 1 5.3886 -4.4504 0.7065 15 7 2.0184 -0.6906 1.1963 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1585 2.4117 18 6 2.6488 -0.7286 3.5878 19 1 2.0274 -1.6030 3.7814 20 6 4.0967 -1.1710 3.3667 21 8 2.5872 0.1570 4.7077 22 6 2.3724 -0.5009 5.9579 23 6 2.3243 0.5230 7.0625 24 6 3.4851 0.8837 7.7211 25 6 3.4430 1.8267 8.7304 26 6 2.2359 2.4016 9.0901 27 9 2.1926 3.3189 10.0810 28 6 1.0730 2.0353 8.4337 29 6 1.1186 1.0971 7.4202 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 4.5981 0.9482 -0.9812 36 1 5.2427 -0.2024 -2.1765 37 1 3.7829 0.7450 -2.5505 38 1 6.8947 -0.6186 0.3030 39 1 2.2490 -1.6317 1.1527 40 1 4.1437 -1.8465 2.5124 41 1 4.7182 -0.2968 3.1731 42 1 4.4598 -1.6845 4.2569 43 1 1.4281 -1.0442 5.9250 44 1 3.1875 -1.2001 6.1452 45 1 4.4258 0.4313 7.4438 46 1 4.3506 2.1114 9.2419 47 1 0.1309 2.4828 8.7137 48 1 0.2116 0.8109 6.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716503602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:33 Heat of formation + Delta-G solvation = -80.788448 kcal Electronic energy + Delta-G solvation = -29833.357694 eV Core-core repulsion = 25610.743359 eV Total energy + Delta-G solvation = -4222.614335 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -49.07563 -39.67940 -39.14184 -37.40009 -36.10745 -33.93414 -32.46342 -31.43739 -31.34121 -30.54852 -29.36282 -26.20012 -26.02964 -25.62828 -23.92591 -23.25014 -21.76994 -21.61401 -20.31680 -19.57809 -17.88818 -17.15451 -16.80593 -16.62416 -16.53801 -15.75752 -15.65971 -15.35415 -14.91297 -14.88632 -14.36343 -14.11089 -13.81474 -13.72457 -13.62290 -13.33097 -13.07663 -12.88924 -12.73240 -12.37547 -12.19205 -12.10989 -11.97725 -11.76918 -11.46035 -11.40176 -11.32967 -11.19558 -10.89935 -10.84382 -10.73447 -10.42031 -10.25703 -10.07744 -9.85797 -9.70297 -9.29511 -8.95627 -8.78572 -8.59569 -8.23787 -6.82890 -5.77845 -3.22069 0.86911 1.05084 3.12959 3.28149 3.32233 3.36077 3.39217 3.65403 4.05824 4.29929 4.41417 4.49065 4.66904 4.79144 4.95520 5.05095 5.12712 5.29010 5.31449 5.32643 5.35695 5.46809 5.52274 5.66600 5.71545 5.78689 5.88575 5.91041 5.98498 6.02436 6.09432 6.16142 6.18314 6.25031 6.33289 6.44508 6.52619 6.67476 6.73041 6.77623 6.88832 7.18896 7.33744 7.35470 7.66332 7.75746 8.30623 8.33325 8.98933 9.15741 9.80785 10.31176 11.25944 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002839 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.992841 B = 9859.232447 C =11082.939663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.120 3.880 3 H 0.076 0.924 4 C 0.142 3.858 5 N -0.597 5.597 6 C 0.163 3.837 7 C -0.257 4.257 8 H 0.066 0.934 9 C 0.010 3.990 10 N -0.892 5.892 11 Si 0.890 3.110 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.279 1.279 15 N -0.686 5.686 16 C 0.520 3.480 17 O -0.542 6.542 18 C 0.074 3.926 19 H 0.077 0.923 20 C -0.165 4.165 21 O -0.350 6.350 22 C 0.099 3.901 23 C -0.093 4.093 24 C -0.068 4.068 25 C -0.157 4.157 26 C 0.099 3.901 27 F -0.142 7.142 28 C -0.157 4.157 29 C -0.067 4.067 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.058 0.942 33 H 0.048 0.952 34 H 0.052 0.948 35 H 0.028 0.972 36 H 0.043 0.957 37 H -0.003 1.003 38 H 0.252 0.748 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.959 -1.141 12.780 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 H 0.094 0.906 4 C 0.014 3.986 5 N -0.320 5.320 6 C 0.018 3.982 7 C -0.387 4.387 8 H 0.084 0.916 9 C -0.190 4.190 10 N -0.536 5.536 11 Si 0.720 3.280 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.205 1.205 15 N -0.337 5.337 16 C 0.304 3.696 17 O -0.420 6.420 18 C 0.013 3.987 19 H 0.094 0.906 20 C -0.223 4.223 21 O -0.269 6.269 22 C 0.023 3.977 23 C -0.094 4.094 24 C -0.086 4.086 25 C -0.176 4.176 26 C 0.080 3.920 27 F -0.120 7.120 28 C -0.176 4.176 29 C -0.085 4.085 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.046 0.954 36 H 0.062 0.938 37 H 0.015 0.985 38 H 0.063 0.937 39 H 0.238 0.762 40 H 0.106 0.894 41 H 0.093 0.907 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.943 -0.016 12.863 15.667 hybrid contribution 0.864 -1.278 0.498 1.621 sum -8.080 -1.294 13.362 15.668 Atomic orbital electron populations 1.22162 0.96993 1.01175 1.01545 1.21804 0.91688 0.98426 0.86855 0.90581 1.21180 0.85952 0.97871 0.93612 1.43899 0.98897 1.22667 1.66490 1.20785 0.92999 0.90512 0.93890 1.19046 0.96257 0.89652 1.33748 0.91639 1.24904 0.98550 0.95884 0.99660 1.70099 1.13085 1.21480 1.48954 0.86511 0.80310 0.83363 0.77832 1.21605 1.21739 1.20491 1.45618 1.65517 1.14244 1.08317 1.20057 0.77759 0.87331 0.84455 1.90642 1.50336 1.15800 1.85181 1.21951 0.98295 0.92086 0.86331 0.90557 1.22183 0.94261 1.03377 1.02438 1.88134 1.93312 1.32450 1.12974 1.21359 1.00598 0.92761 0.83031 1.19674 0.93509 0.99310 0.96872 1.20976 0.98333 0.95449 0.93809 1.21133 0.96993 0.99236 1.00230 1.17766 0.94964 0.90571 0.88699 1.91495 1.97314 1.64144 1.59097 1.21123 0.97680 1.00485 0.98335 1.20954 0.98156 0.94375 0.95023 0.93052 0.92992 0.92284 0.93350 0.92990 0.95374 0.93785 0.98480 0.93744 0.76178 0.89440 0.90701 0.92677 0.92327 0.92082 0.84674 0.84601 0.84634 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.38 9.48 37.16 0.35 -2.03 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 4 C 0.14 2.64 5.36 -4.05 -0.02 2.62 16 5 N -0.60 -13.67 2.82 -181.12 -0.51 -14.18 16 6 C 0.16 3.87 9.03 59.85 0.54 4.41 16 7 C -0.26 -6.19 8.01 -15.06 -0.12 -6.31 16 8 H 0.07 1.52 7.86 -52.49 -0.41 1.11 16 9 C 0.01 0.24 5.04 -17.43 -0.09 0.15 16 10 N -0.89 -24.04 10.74 55.49 0.60 -23.45 16 11 Si 0.89 19.92 29.58 -169.99 -5.03 14.89 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 N -0.69 -12.78 4.45 -53.80 -0.24 -13.01 16 16 C 0.52 10.34 7.14 -10.98 -0.08 10.26 16 17 O -0.54 -12.85 16.17 -14.30 -0.23 -13.08 16 18 C 0.07 1.22 3.13 -27.88 -0.09 1.13 16 19 H 0.08 0.99 7.79 -51.93 -0.40 0.59 16 20 C -0.16 -2.82 9.48 37.16 0.35 -2.47 16 21 O -0.35 -5.86 9.51 -55.09 -0.52 -6.39 16 22 C 0.10 1.19 5.87 36.01 0.21 1.40 16 23 C -0.09 -1.10 5.51 -104.62 -0.58 -1.68 16 24 C -0.07 -0.74 9.70 -39.60 -0.38 -1.13 16 25 C -0.16 -1.67 10.03 -39.52 -0.40 -2.07 16 26 C 0.10 1.12 7.30 -39.42 -0.29 0.83 16 27 F -0.14 -1.66 17.27 2.25 0.04 -1.62 16 28 C -0.16 -1.66 10.03 -39.51 -0.40 -2.05 16 29 C -0.07 -0.73 9.70 -39.60 -0.38 -1.12 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.84 8.03 -51.93 -0.42 0.43 16 34 H 0.05 0.89 7.87 -51.93 -0.41 0.48 16 35 H 0.03 0.74 7.46 -51.93 -0.39 0.36 16 36 H 0.04 1.12 7.18 -51.94 -0.37 0.75 16 37 H 0.00 -0.07 7.85 -51.93 -0.41 -0.48 16 38 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.40 7.20 7.18 -40.82 -0.29 6.90 16 40 H 0.09 1.61 7.92 -51.92 -0.41 1.20 16 41 H 0.07 1.52 8.14 -51.93 -0.42 1.09 16 42 H 0.05 0.77 7.87 -51.93 -0.41 0.37 16 43 H 0.06 0.59 8.03 -51.93 -0.42 0.18 16 44 H 0.06 0.63 7.81 -51.92 -0.41 0.23 16 45 H 0.14 1.29 8.06 -52.48 -0.42 0.86 16 46 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 47 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 48 H 0.13 1.26 8.06 -52.48 -0.42 0.83 16 LS Contribution 403.07 15.07 6.07 6.07 Total: -1.00 -30.82 403.07 -9.04 -39.87 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.66 Total: 6.92 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.56 Total: 3.97 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.15 Total: -50.64 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.75 Total: -19.47 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.04 Total: -1.62 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.03 Total: 14.89 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -30.82 -9.04 -39.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716503602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.923 kcal (2) G-P(sol) polarization free energy of solvation -30.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds