Wall clock time and date at job start Tue Mar 31 2020 20:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46798 * 2 1 4 4 C 1.52987 * 109.46989 * 239.99517 * 2 1 3 5 5 N 1.46504 * 109.47201 * 184.99992 * 4 2 1 6 6 C 1.46503 * 120.00148 * 270.00026 * 5 4 2 7 7 C 1.36935 * 119.99856 * 90.00495 * 5 4 2 8 8 H 1.07998 * 120.00546 * 20.82561 * 7 5 4 9 9 C 1.38814 * 120.00087 * 200.83702 * 7 5 4 10 10 N 1.31628 * 119.99693 * 15.51636 * 9 7 5 11 11 Si 1.86795 * 120.00471 * 195.51893 * 9 7 5 12 12 H 1.48503 * 109.47261 * 89.99284 * 11 9 7 13 13 H 1.48496 * 109.47673 * 209.99751 * 11 9 7 14 14 H 1.48508 * 109.46708 * 329.99945 * 11 9 7 15 15 N 1.46508 * 109.47001 * 119.99735 * 2 1 3 16 16 C 1.34779 * 119.99580 * 275.00048 * 15 2 1 17 17 O 1.21273 * 120.00247 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99390 * 179.97438 * 16 15 2 19 19 H 1.09004 * 109.47673 * 305.00249 * 18 16 15 20 20 C 1.53004 * 109.47251 * 65.00110 * 18 16 15 21 21 O 1.42905 * 109.47286 * 184.99682 * 18 16 15 22 22 C 1.42896 * 114.00104 * 149.99761 * 21 18 16 23 23 C 1.50699 * 109.46975 * 180.02562 * 22 21 18 24 24 C 1.38246 * 119.97700 * 269.72757 * 23 22 21 25 25 C 1.38190 * 120.02553 * 179.72544 * 24 23 22 26 26 C 1.38458 * 119.97537 * 0.57429 * 25 24 23 27 27 F 1.35105 * 120.02700 * 179.68433 * 26 25 24 28 28 C 1.38464 * 119.94798 * 359.70193 * 26 25 24 29 29 C 1.38192 * 119.97084 * 359.97438 * 28 26 25 30 30 H 1.08994 * 109.46988 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46864 * 300.00170 * 1 2 3 32 32 H 1.08996 * 109.47072 * 60.00040 * 1 2 3 33 33 H 1.08998 * 109.47562 * 305.00264 * 4 2 1 34 34 H 1.09003 * 109.47412 * 65.00259 * 4 2 1 35 35 H 1.09003 * 109.46465 * 93.93889 * 6 5 4 36 36 H 1.08988 * 109.47059 * 213.93462 * 6 5 4 37 37 H 1.09003 * 109.46877 * 333.94557 * 6 5 4 38 38 H 0.96999 * 119.99710 * 180.02562 * 10 9 7 39 39 H 0.96992 * 119.99612 * 94.99440 * 15 2 1 40 40 H 1.09008 * 109.46701 * 299.99928 * 20 18 16 41 41 H 1.08994 * 109.47222 * 59.99554 * 20 18 16 42 42 H 1.08996 * 109.47391 * 179.97438 * 20 18 16 43 43 H 1.08997 * 109.47300 * 300.00952 * 22 21 18 44 44 H 1.09008 * 109.46848 * 60.00383 * 22 21 18 45 45 H 1.08005 * 119.98379 * 359.97438 * 24 23 22 46 46 H 1.08006 * 120.01449 * 180.25754 * 25 24 23 47 47 H 1.07995 * 120.01030 * 179.97438 * 28 26 25 48 48 H 1.08003 * 119.98421 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5001 -0.8265 -1.1905 6 6 4.3344 0.2339 -1.7613 7 6 4.0850 -1.9159 -0.6022 8 1 3.5256 -2.8325 -0.4864 9 6 5.3968 -1.8423 -0.1544 10 7 5.9779 -0.6701 -0.0096 11 14 6.3375 -3.4064 0.2428 12 1 7.0417 -3.8832 -0.9747 13 1 7.3299 -3.1294 1.3121 14 1 5.3886 -4.4504 0.7065 15 7 2.0184 -0.6906 1.1963 16 6 2.1471 -0.0181 2.3572 17 8 1.8582 1.1585 2.4117 18 6 2.6488 -0.7286 3.5878 19 1 2.0274 -1.6030 3.7814 20 6 4.0967 -1.1710 3.3667 21 8 2.5872 0.1570 4.7077 22 6 2.3724 -0.5009 5.9579 23 6 2.3243 0.5230 7.0625 24 6 3.4851 0.8837 7.7211 25 6 3.4430 1.8267 8.7304 26 6 2.2359 2.4016 9.0901 27 9 2.1926 3.3189 10.0810 28 6 1.0730 2.0353 8.4337 29 6 1.1186 1.0971 7.4202 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.6054 -1.7198 -1.2950 34 1 1.7517 -0.1584 -2.1369 35 1 4.5981 0.9482 -0.9812 36 1 5.2427 -0.2024 -2.1765 37 1 3.7829 0.7450 -2.5505 38 1 6.8947 -0.6186 0.3030 39 1 2.2490 -1.6317 1.1527 40 1 4.1437 -1.8465 2.5124 41 1 4.7182 -0.2968 3.1731 42 1 4.4598 -1.6845 4.2569 43 1 1.4281 -1.0442 5.9250 44 1 3.1875 -1.2001 6.1452 45 1 4.4258 0.4313 7.4438 46 1 4.3506 2.1114 9.2419 47 1 0.1309 2.4828 8.7137 48 1 0.2116 0.8109 6.9083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716503602.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:32 Heat of formation + Delta-G solvation = -97.646868 kcal Electronic energy + Delta-G solvation = -29834.088730 eV Core-core repulsion = 25610.743359 eV Total energy + Delta-G solvation = -4223.345371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -49.95461 -40.98037 -40.19239 -38.65535 -37.74599 -35.63093 -33.75803 -32.88148 -32.14804 -31.97428 -30.73392 -28.00109 -27.31703 -26.98881 -25.29035 -24.06625 -23.42900 -22.50414 -21.83371 -21.11159 -18.81385 -18.67886 -18.18275 -17.97987 -17.49989 -16.93297 -16.77510 -16.63499 -16.48164 -16.09389 -15.63106 -15.40185 -15.30745 -14.89855 -14.87522 -14.51177 -14.43579 -14.23770 -13.97945 -13.81941 -13.43627 -13.28930 -13.22632 -13.10941 -13.06991 -12.82693 -12.66760 -12.55606 -12.46357 -12.15174 -12.05701 -11.99671 -11.89683 -11.87452 -11.61838 -10.91717 -10.52214 -10.37483 -10.10519 -9.78271 -9.69657 -8.72129 -7.70076 -5.15615 0.00265 0.23957 1.50126 1.55891 1.61447 1.76253 2.08148 2.56087 2.59155 3.16618 3.23126 3.45100 3.70109 3.70928 3.79366 3.89445 3.95143 4.02102 4.09830 4.20875 4.21646 4.25414 4.46541 4.48888 4.58064 4.58503 4.76859 4.79954 4.81663 4.87796 4.93559 4.94894 4.95513 5.04417 5.09622 5.19944 5.22431 5.34163 5.35715 5.43903 5.50014 5.71475 5.77334 5.80761 5.85897 6.13206 6.40246 6.83385 7.22936 7.48644 7.96026 8.43299 9.33369 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013879 B = 0.002839 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.992841 B = 9859.232447 C =11082.939663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.122 3.878 3 H 0.034 0.966 4 C 0.142 3.858 5 N -0.610 5.610 6 C 0.178 3.822 7 C -0.247 4.247 8 H 0.082 0.918 9 C -0.037 4.037 10 N -0.928 5.928 11 Si 0.943 3.057 12 H -0.301 1.301 13 H -0.304 1.304 14 H -0.255 1.255 15 N -0.681 5.681 16 C 0.509 3.491 17 O -0.590 6.590 18 C 0.083 3.917 19 H 0.120 0.880 20 C -0.154 4.154 21 O -0.381 6.381 22 C 0.093 3.907 23 C -0.109 4.109 24 C -0.076 4.076 25 C -0.161 4.161 26 C 0.084 3.916 27 F -0.147 7.147 28 C -0.160 4.160 29 C -0.074 4.074 30 H 0.075 0.925 31 H 0.036 0.964 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.071 0.929 35 H -0.010 1.010 36 H 0.019 0.981 37 H 0.025 0.975 38 H 0.241 0.759 39 H 0.408 0.592 40 H 0.073 0.927 41 H 0.031 0.969 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.147 0.853 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.841 -3.438 13.157 17.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.014 3.986 3 H 0.052 0.948 4 C 0.015 3.985 5 N -0.333 5.333 6 C 0.033 3.967 7 C -0.377 4.377 8 H 0.100 0.900 9 C -0.233 4.233 10 N -0.575 5.575 11 Si 0.773 3.227 12 H -0.229 1.229 13 H -0.231 1.231 14 H -0.179 1.179 15 N -0.331 5.331 16 C 0.295 3.705 17 O -0.471 6.471 18 C 0.023 3.977 19 H 0.137 0.863 20 C -0.211 4.211 21 O -0.300 6.300 22 C 0.018 3.982 23 C -0.110 4.110 24 C -0.094 4.094 25 C -0.180 4.180 26 C 0.065 3.935 27 F -0.126 7.126 28 C -0.179 4.179 29 C -0.092 4.092 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.008 0.992 36 H 0.038 0.962 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.245 0.755 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.107 0.893 43 H 0.100 0.900 44 H 0.098 0.902 45 H 0.165 0.835 46 H 0.170 0.830 47 H 0.172 0.828 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.872 -2.362 13.233 17.289 hybrid contribution 1.397 -0.520 0.359 1.533 sum -9.475 -2.882 13.592 16.817 Atomic orbital electron populations 1.22023 0.93763 1.02814 1.01867 1.21710 0.94102 0.96034 0.86754 0.94760 1.21379 0.83324 0.99482 0.94286 1.44138 1.00780 1.22083 1.66266 1.20475 0.92854 0.90079 0.93338 1.19407 0.96133 0.90374 1.31746 0.89990 1.25489 0.99608 0.97717 1.00532 1.70289 1.12604 1.23459 1.51102 0.85630 0.79195 0.81256 0.76582 1.22895 1.23101 1.17863 1.45655 1.64902 1.14360 1.08233 1.20808 0.76959 0.86984 0.85766 1.90609 1.52523 1.17898 1.86049 1.21867 0.98037 0.92778 0.85048 0.86274 1.22059 0.94318 1.01380 1.03379 1.88106 1.93527 1.33935 1.14423 1.21637 1.02544 0.93019 0.81033 1.19860 0.94090 0.99887 0.97141 1.21193 0.98779 0.95592 0.93853 1.21358 0.97537 0.98920 1.00158 1.18002 0.95654 0.90890 0.88992 1.91480 1.97369 1.64370 1.59332 1.21364 0.98298 1.00230 0.97961 1.21187 0.98587 0.94311 0.95132 0.90631 0.94430 0.90262 0.90978 0.91101 0.99177 0.96193 0.95616 0.94999 0.75546 0.90799 0.94999 0.89327 0.90036 0.90227 0.83523 0.83006 0.82841 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.00 9.48 71.98 0.68 -3.31 16 2 C 0.12 4.34 2.88 44.99 0.13 4.47 16 3 H 0.03 1.52 7.58 -2.39 -0.02 1.50 16 4 C 0.14 4.95 5.36 86.37 0.46 5.41 16 5 N -0.61 -27.39 2.82 -726.95 -2.05 -29.44 16 6 C 0.18 8.58 9.03 127.77 1.15 9.73 16 7 C -0.25 -11.53 8.01 84.03 0.67 -10.86 16 8 H 0.08 3.55 7.86 -2.91 -0.02 3.52 16 9 C -0.04 -1.88 5.04 84.86 0.43 -1.45 16 10 N -0.93 -51.66 10.74 21.65 0.23 -51.43 16 11 Si 0.94 40.65 29.58 68.60 2.03 42.68 16 12 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 14 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 15 N -0.68 -24.72 4.45 -442.53 -1.97 -26.69 16 16 C 0.51 20.21 7.14 87.66 0.63 20.83 16 17 O -0.59 -28.71 16.17 15.98 0.26 -28.45 16 18 C 0.08 2.62 3.13 29.85 0.09 2.71 16 19 H 0.12 2.69 7.79 -2.39 -0.02 2.67 16 20 C -0.15 -5.13 9.48 71.98 0.68 -4.45 16 21 O -0.38 -12.37 9.51 -129.99 -1.24 -13.60 16 22 C 0.09 2.03 5.87 71.24 0.42 2.45 16 23 C -0.11 -2.44 5.51 -19.86 -0.11 -2.55 16 24 C -0.08 -1.60 9.70 22.26 0.22 -1.39 16 25 C -0.16 -3.29 10.03 22.31 0.22 -3.07 16 26 C 0.08 1.83 7.30 22.38 0.16 2.00 16 27 F -0.15 -3.35 17.27 44.97 0.78 -2.57 16 28 C -0.16 -3.20 10.03 22.31 0.22 -2.98 16 29 C -0.07 -1.53 9.70 22.26 0.22 -1.31 16 30 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 2.22 8.03 -2.39 -0.02 2.20 16 34 H 0.07 2.22 7.87 -2.39 -0.02 2.20 16 35 H -0.01 -0.56 7.46 -2.39 -0.02 -0.58 16 36 H 0.02 1.02 7.18 -2.39 -0.02 1.00 16 37 H 0.03 1.06 7.85 -2.39 -0.02 1.04 16 38 H 0.24 13.46 8.31 -92.71 -0.77 12.69 16 39 H 0.41 13.77 7.18 -92.71 -0.67 13.11 16 40 H 0.07 2.65 7.92 -2.38 -0.02 2.63 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 2.30 7.87 -2.39 -0.02 2.29 16 43 H 0.08 1.38 8.03 -2.39 -0.02 1.37 16 44 H 0.08 1.42 7.81 -2.38 -0.02 1.40 16 45 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 46 H 0.15 2.47 8.06 -2.91 -0.02 2.45 16 47 H 0.15 2.38 8.06 -2.91 -0.02 2.36 16 48 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 Total: -1.00 -69.83 403.07 4.61 -65.21 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.29 Total: 28.06 kcal Atomic # 6 Polarization: 9.95 SS G_CDS: 6.28 Total: 16.24 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -3.79 Total: -107.56 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.98 Total: -42.06 kcal Atomic # 9 Polarization: -3.35 SS G_CDS: 0.78 Total: -2.57 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -69.83 4.61 -65.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716503602.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.434 kcal (2) G-P(sol) polarization free energy of solvation -69.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds