Wall clock time and date at job start Tue Mar 31 2020 20:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47611 * 2 1 4 4 C 1.53008 * 109.47239 * 119.99994 * 2 1 3 5 5 N 1.46503 * 109.46987 * 174.99758 * 4 2 1 6 6 C 1.46491 * 120.00164 * 269.99859 * 5 4 2 7 7 C 1.36939 * 119.99432 * 90.00312 * 5 4 2 8 8 H 1.07998 * 120.00244 * 23.82702 * 7 5 4 9 9 C 1.38813 * 119.99435 * 203.82540 * 7 5 4 10 10 N 1.31622 * 120.00333 * 10.87944 * 9 7 5 11 11 Si 1.86803 * 119.99905 * 190.87465 * 9 7 5 12 12 H 1.48500 * 109.46995 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47037 * 120.00104 * 11 9 7 14 14 H 1.48507 * 109.46935 * 240.00188 * 11 9 7 15 15 N 1.46505 * 109.47060 * 239.99939 * 2 1 3 16 16 C 1.34773 * 120.00114 * 85.00277 * 15 2 1 17 17 O 1.21283 * 119.99892 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99958 * 180.02562 * 16 15 2 19 19 H 1.09003 * 109.47498 * 59.99732 * 18 16 15 20 20 C 1.52999 * 109.47138 * 299.99493 * 18 16 15 21 21 O 1.42900 * 109.47199 * 179.97438 * 18 16 15 22 22 C 1.42899 * 114.00556 * 209.99907 * 21 18 16 23 23 C 1.50700 * 109.47465 * 179.97438 * 22 21 18 24 24 C 1.38244 * 119.97475 * 89.99687 * 23 22 21 25 25 C 1.38194 * 120.02466 * 179.74073 * 24 23 22 26 26 C 1.38453 * 119.97383 * 0.26132 * 25 24 23 27 27 F 1.35100 * 120.02416 * 180.02562 * 26 25 24 28 28 C 1.38457 * 119.95375 * 359.97438 * 26 25 24 29 29 C 1.38200 * 119.96851 * 359.97438 * 28 26 25 30 30 H 1.09004 * 109.47151 * 299.99861 * 1 2 3 31 31 H 1.08998 * 109.47160 * 60.00218 * 1 2 3 32 32 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46915 * 294.99789 * 4 2 1 34 34 H 1.09003 * 109.46854 * 55.00207 * 4 2 1 35 35 H 1.09005 * 109.47264 * 94.93769 * 6 5 4 36 36 H 1.08998 * 109.47103 * 214.93926 * 6 5 4 37 37 H 1.09002 * 109.47566 * 334.93886 * 6 5 4 38 38 H 0.97003 * 120.00509 * 180.02562 * 10 9 7 39 39 H 0.97002 * 119.99558 * 264.99652 * 15 2 1 40 40 H 1.08997 * 109.47153 * 60.00072 * 20 18 16 41 41 H 1.08996 * 109.47418 * 180.02562 * 20 18 16 42 42 H 1.09003 * 109.47121 * 300.00470 * 20 18 16 43 43 H 1.09002 * 109.46847 * 59.99719 * 22 21 18 44 44 H 1.09003 * 109.46993 * 300.00003 * 22 21 18 45 45 H 1.08004 * 119.98309 * 0.02930 * 24 23 22 46 46 H 1.08007 * 120.01070 * 180.27538 * 25 24 23 47 47 H 1.07998 * 120.01738 * 180.02562 * 28 26 25 48 48 H 1.08000 * 119.98259 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1648 1.7240 8 1 3.8845 0.8048 2.4990 9 6 5.5784 0.3470 1.2687 10 7 5.9910 -0.2804 0.1877 11 14 6.7405 1.4829 2.1901 12 1 6.0391 2.0626 3.3635 13 1 7.9231 0.7124 2.6518 14 1 7.1833 2.5760 1.2876 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7289 -3.5877 19 1 1.9759 -1.5507 -3.8326 20 6 4.0513 -1.2799 -3.3222 21 8 2.6965 0.1891 -4.6817 22 6 2.4887 -0.4172 -5.9589 23 6 2.5590 0.6374 -7.0331 24 6 3.7698 0.9363 -7.6296 25 6 3.8345 1.8994 -8.6185 26 6 2.6869 2.5689 -9.0081 27 9 2.7489 3.5103 -9.9751 28 6 1.4756 2.2723 -8.4067 29 6 1.4132 1.3080 -7.4187 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7199 1.2952 35 1 4.3597 -1.7618 -0.4783 36 1 5.0434 -2.2431 1.0931 37 1 3.4398 -2.8382 0.6005 38 1 6.8986 -0.1534 -0.1303 39 1 2.2490 -1.6318 -1.1526 40 1 4.0145 -1.9803 -2.4879 41 1 4.4144 -1.7935 -4.2124 42 1 4.7242 -0.4581 -3.0774 43 1 1.5080 -0.8923 -5.9803 44 1 3.2598 -1.1673 -6.1347 45 1 4.6647 0.4135 -7.3257 46 1 4.7798 2.1295 -9.0874 47 1 0.5797 2.7936 -8.7101 48 1 0.4684 1.0761 -6.9497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716503605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:48 Heat of formation + Delta-G solvation = -79.951440 kcal Electronic energy + Delta-G solvation = -29662.318233 eV Core-core repulsion = 25439.740193 eV Total energy + Delta-G solvation = -4222.578040 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.08850 -39.75346 -39.20607 -37.46355 -36.13942 -33.97066 -32.54059 -31.39316 -31.35770 -30.64217 -29.43428 -26.22482 -26.06373 -25.61683 -24.03838 -23.27051 -21.74594 -21.62248 -20.35835 -19.73098 -17.90495 -17.11355 -16.97057 -16.71342 -16.54822 -15.76837 -15.74694 -15.40077 -14.92518 -14.86975 -14.40734 -14.11813 -13.85529 -13.75039 -13.62651 -13.28295 -13.22037 -12.99030 -12.73654 -12.38873 -12.24258 -12.20547 -12.07818 -11.80245 -11.52279 -11.42838 -11.22121 -11.12129 -10.93191 -10.83436 -10.76395 -10.54446 -10.18947 -9.93528 -9.85400 -9.78233 -9.31087 -9.03196 -8.82464 -8.58906 -8.33371 -6.73734 -5.72887 -3.18703 0.84785 1.03485 3.05594 3.25103 3.39090 3.47160 3.48297 3.59014 4.04436 4.20743 4.46967 4.51431 4.64451 4.73816 4.91703 5.00842 5.03866 5.16367 5.25817 5.29600 5.36279 5.40063 5.49957 5.68913 5.69498 5.76497 5.85621 5.89561 5.95220 5.96183 6.00709 6.01511 6.10505 6.24977 6.30552 6.47779 6.53400 6.59893 6.63203 6.65853 6.89548 7.10087 7.25065 7.30765 7.65655 7.81495 8.15256 8.39481 8.87231 9.23482 9.85354 10.33507 11.32136 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002675 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.688104 B =10466.301259 C =11462.478155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.159 3.841 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.902 5.902 11 Si 0.902 3.098 12 H -0.279 1.279 13 H -0.291 1.291 14 H -0.291 1.291 15 N -0.696 5.696 16 C 0.519 3.481 17 O -0.532 6.532 18 C 0.073 3.927 19 H 0.078 0.922 20 C -0.165 4.165 21 O -0.349 6.349 22 C 0.100 3.900 23 C -0.095 4.095 24 C -0.067 4.067 25 C -0.158 4.158 26 C 0.100 3.900 27 F -0.142 7.142 28 C -0.158 4.158 29 C -0.066 4.066 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.041 0.959 35 H 0.036 0.964 36 H 0.042 0.958 37 H -0.007 1.007 38 H 0.250 0.750 39 H 0.393 0.607 40 H 0.078 0.922 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.052 -5.055 -15.127 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.011 3.989 3 H 0.103 0.897 4 C 0.015 3.985 5 N -0.319 5.319 6 C 0.014 3.986 7 C -0.384 4.384 8 H 0.085 0.915 9 C -0.192 4.192 10 N -0.547 5.547 11 Si 0.733 3.267 12 H -0.204 1.204 13 H -0.218 1.218 14 H -0.218 1.218 15 N -0.348 5.348 16 C 0.303 3.697 17 O -0.408 6.408 18 C 0.012 3.988 19 H 0.096 0.904 20 C -0.223 4.223 21 O -0.267 6.267 22 C 0.023 3.977 23 C -0.096 4.096 24 C -0.085 4.085 25 C -0.176 4.176 26 C 0.081 3.919 27 F -0.120 7.120 28 C -0.176 4.176 29 C -0.084 4.084 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.012 0.988 38 H 0.060 0.940 39 H 0.228 0.772 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.154 0.846 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.035 -3.974 -15.228 18.147 hybrid contribution 0.925 0.203 0.154 0.960 sum -8.110 -3.771 -15.074 17.527 Atomic orbital electron populations 1.22156 0.96976 1.01003 1.01686 1.21856 0.91559 0.99222 0.86244 0.89663 1.21198 0.85845 0.97152 0.94334 1.43874 0.99022 1.20853 1.68160 1.20913 0.94474 0.85040 0.98150 1.19192 0.94649 1.10555 1.14051 0.91491 1.25002 0.98873 0.98967 0.96367 1.70019 1.17108 1.45455 1.22152 0.86219 0.80999 0.80363 0.79141 1.20415 1.21768 1.21753 1.45695 1.66487 1.13568 1.09010 1.20085 0.77853 0.87416 0.84327 1.90669 1.49596 1.15635 1.84937 1.21961 0.98345 0.91526 0.86989 0.90429 1.22207 0.95418 1.02674 1.01984 1.88154 1.92868 1.33222 1.12462 1.21363 1.00568 0.93131 0.82601 1.19664 0.93615 0.99034 0.97238 1.20972 0.97619 0.95864 0.94038 1.21138 0.97824 0.98488 1.00178 1.17769 0.95006 0.89742 0.89386 1.91496 1.97212 1.62593 1.60719 1.21129 0.96991 1.00606 0.98924 1.20954 0.98804 0.93806 0.94871 0.92107 0.93014 0.93237 0.92321 0.94073 0.94604 0.93949 0.98844 0.93980 0.77240 0.90342 0.92337 0.90182 0.92313 0.92051 0.84655 0.84577 0.84615 0.84777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.02 16 2 C 0.12 2.20 2.88 -67.93 -0.20 2.00 16 3 H 0.09 1.95 7.58 -51.93 -0.39 1.56 16 4 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 5 N -0.60 -13.93 2.78 -181.12 -0.50 -14.43 16 6 C 0.16 3.51 7.59 59.84 0.45 3.96 16 7 C -0.25 -6.79 9.66 -15.06 -0.15 -6.94 16 8 H 0.07 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.01 0.18 5.14 -17.43 -0.09 0.09 16 10 N -0.90 -25.08 10.64 55.49 0.59 -24.49 16 11 Si 0.90 21.94 29.57 -169.99 -5.03 16.91 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 15 N -0.70 -12.34 4.31 -53.80 -0.23 -12.57 16 16 C 0.52 9.96 7.20 -10.99 -0.08 9.88 16 17 O -0.53 -12.54 16.16 -14.35 -0.23 -12.78 16 18 C 0.07 1.10 3.14 -27.88 -0.09 1.02 16 19 H 0.08 0.89 7.79 -51.93 -0.40 0.49 16 20 C -0.17 -2.48 9.42 37.16 0.35 -2.13 16 21 O -0.35 -5.60 9.50 -55.14 -0.52 -6.13 16 22 C 0.10 1.13 5.87 36.01 0.21 1.34 16 23 C -0.10 -1.09 5.51 -104.62 -0.58 -1.66 16 24 C -0.07 -0.71 9.70 -39.60 -0.38 -1.10 16 25 C -0.16 -1.64 10.03 -39.52 -0.40 -2.04 16 26 C 0.10 1.12 7.30 -39.42 -0.29 0.83 16 27 F -0.14 -1.64 17.27 2.25 0.04 -1.60 16 28 C -0.16 -1.64 10.03 -39.51 -0.40 -2.04 16 29 C -0.07 -0.71 9.70 -39.59 -0.38 -1.09 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 34 H 0.04 0.68 7.86 -51.93 -0.41 0.27 16 35 H 0.04 0.82 5.58 -51.93 -0.29 0.53 16 36 H 0.04 1.04 7.33 -51.93 -0.38 0.66 16 37 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 38 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 39 H 0.39 6.23 6.60 -40.82 -0.27 5.96 16 40 H 0.08 1.17 6.25 -51.93 -0.32 0.85 16 41 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 42 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 43 H 0.06 0.55 8.03 -51.93 -0.42 0.13 16 44 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 45 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 47 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 48 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 399.06 15.07 6.01 6.01 Total: -1.00 -32.96 399.06 -9.00 -41.96 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -7.45 Total: 4.33 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -1.68 Total: 2.78 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: -0.14 Total: -51.49 kcal Atomic # 8 Polarization: -18.15 SS G_CDS: -0.76 Total: -18.90 kcal Atomic # 9 Polarization: -1.64 SS G_CDS: 0.04 Total: -1.60 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.96 -9.00 -41.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716503605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.987 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds