Wall clock time and date at job start Tue Mar 31 2020 20:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47611 * 2 1 4 4 C 1.53008 * 109.47239 * 119.99994 * 2 1 3 5 5 N 1.46503 * 109.46987 * 174.99758 * 4 2 1 6 6 C 1.46491 * 120.00164 * 269.99859 * 5 4 2 7 7 C 1.36939 * 119.99432 * 90.00312 * 5 4 2 8 8 H 1.07998 * 120.00244 * 23.82702 * 7 5 4 9 9 C 1.38813 * 119.99435 * 203.82540 * 7 5 4 10 10 N 1.31622 * 120.00333 * 10.87944 * 9 7 5 11 11 Si 1.86803 * 119.99905 * 190.87465 * 9 7 5 12 12 H 1.48500 * 109.46995 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47037 * 120.00104 * 11 9 7 14 14 H 1.48507 * 109.46935 * 240.00188 * 11 9 7 15 15 N 1.46505 * 109.47060 * 239.99939 * 2 1 3 16 16 C 1.34773 * 120.00114 * 85.00277 * 15 2 1 17 17 O 1.21283 * 119.99892 * 359.97438 * 16 15 2 18 18 C 1.50697 * 119.99958 * 180.02562 * 16 15 2 19 19 H 1.09003 * 109.47498 * 59.99732 * 18 16 15 20 20 C 1.52999 * 109.47138 * 299.99493 * 18 16 15 21 21 O 1.42900 * 109.47199 * 179.97438 * 18 16 15 22 22 C 1.42899 * 114.00556 * 209.99907 * 21 18 16 23 23 C 1.50700 * 109.47465 * 179.97438 * 22 21 18 24 24 C 1.38244 * 119.97475 * 89.99687 * 23 22 21 25 25 C 1.38194 * 120.02466 * 179.74073 * 24 23 22 26 26 C 1.38453 * 119.97383 * 0.26132 * 25 24 23 27 27 F 1.35100 * 120.02416 * 180.02562 * 26 25 24 28 28 C 1.38457 * 119.95375 * 359.97438 * 26 25 24 29 29 C 1.38200 * 119.96851 * 359.97438 * 28 26 25 30 30 H 1.09004 * 109.47151 * 299.99861 * 1 2 3 31 31 H 1.08998 * 109.47160 * 60.00218 * 1 2 3 32 32 H 1.09001 * 109.47115 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.46915 * 294.99789 * 4 2 1 34 34 H 1.09003 * 109.46854 * 55.00207 * 4 2 1 35 35 H 1.09005 * 109.47264 * 94.93769 * 6 5 4 36 36 H 1.08998 * 109.47103 * 214.93926 * 6 5 4 37 37 H 1.09002 * 109.47566 * 334.93886 * 6 5 4 38 38 H 0.97003 * 120.00509 * 180.02562 * 10 9 7 39 39 H 0.97002 * 119.99558 * 264.99652 * 15 2 1 40 40 H 1.08997 * 109.47153 * 60.00072 * 20 18 16 41 41 H 1.08996 * 109.47418 * 180.02562 * 20 18 16 42 42 H 1.09003 * 109.47121 * 300.00470 * 20 18 16 43 43 H 1.09002 * 109.46847 * 59.99719 * 22 21 18 44 44 H 1.09003 * 109.46993 * 300.00003 * 22 21 18 45 45 H 1.08004 * 119.98309 * 0.02930 * 24 23 22 46 46 H 1.08007 * 120.01070 * 180.27538 * 25 24 23 47 47 H 1.07998 * 120.01738 * 180.02562 * 28 26 25 48 48 H 1.08000 * 119.98259 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5001 -0.8264 1.1905 6 6 4.1258 -1.9919 0.5612 7 6 4.2798 0.1648 1.7240 8 1 3.8845 0.8048 2.4990 9 6 5.5784 0.3470 1.2687 10 7 5.9910 -0.2804 0.1877 11 14 6.7405 1.4829 2.1901 12 1 6.0391 2.0626 3.3635 13 1 7.9231 0.7124 2.6518 14 1 7.1833 2.5760 1.2876 15 7 2.0183 -0.6906 -1.1962 16 6 2.1471 -0.0183 -2.3571 17 8 1.8582 1.1583 -2.4117 18 6 2.6488 -0.7289 -3.5877 19 1 1.9759 -1.5507 -3.8326 20 6 4.0513 -1.2799 -3.3222 21 8 2.6965 0.1891 -4.6817 22 6 2.4887 -0.4172 -5.9589 23 6 2.5590 0.6374 -7.0331 24 6 3.7698 0.9363 -7.6296 25 6 3.8345 1.8994 -8.6185 26 6 2.6869 2.5689 -9.0081 27 9 2.7489 3.5103 -9.9751 28 6 1.4756 2.2723 -8.4067 29 6 1.4132 1.3080 -7.4187 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -0.1583 2.1369 34 1 1.6054 -1.7199 1.2952 35 1 4.3597 -1.7618 -0.4783 36 1 5.0434 -2.2431 1.0931 37 1 3.4398 -2.8382 0.6005 38 1 6.8986 -0.1534 -0.1303 39 1 2.2490 -1.6318 -1.1526 40 1 4.0145 -1.9803 -2.4879 41 1 4.4144 -1.7935 -4.2124 42 1 4.7242 -0.4581 -3.0774 43 1 1.5080 -0.8923 -5.9803 44 1 3.2598 -1.1673 -6.1347 45 1 4.6647 0.4135 -7.3257 46 1 4.7798 2.1295 -9.0874 47 1 0.5797 2.7936 -8.7101 48 1 0.4684 1.0761 -6.9497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716503605.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:58:47 Heat of formation + Delta-G solvation = -99.007215 kcal Electronic energy + Delta-G solvation = -29663.144553 eV Core-core repulsion = 25439.740193 eV Total energy + Delta-G solvation = -4223.404360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.95766 -41.02452 -40.19804 -38.66101 -37.76501 -35.69086 -33.74934 -32.87897 -32.14498 -32.08825 -30.72957 -27.94163 -27.36741 -26.97737 -25.32638 -24.06573 -23.37539 -22.50031 -21.88072 -21.20025 -18.77661 -18.75090 -18.34030 -17.95014 -17.49593 -16.98755 -16.82790 -16.63755 -16.49775 -16.05458 -15.66412 -15.44916 -15.20382 -15.09736 -14.86040 -14.52400 -14.47774 -14.22033 -13.96188 -13.73596 -13.49996 -13.29687 -13.23451 -13.15258 -12.96458 -12.84214 -12.62495 -12.57600 -12.50034 -12.25273 -12.05437 -11.99136 -11.97999 -11.79206 -11.63768 -10.91724 -10.61251 -10.38531 -10.10231 -9.87450 -9.69594 -8.65443 -7.78079 -5.23463 0.00485 0.24220 1.42701 1.46452 1.53579 1.72267 2.07582 2.51645 2.55845 3.15555 3.23331 3.35735 3.70529 3.71375 3.78698 3.87486 3.94425 4.01190 4.10585 4.20999 4.23434 4.25930 4.45313 4.47494 4.57525 4.59114 4.74676 4.79998 4.85056 4.89507 4.93842 4.95166 4.96073 5.04350 5.09960 5.20273 5.23285 5.32472 5.41938 5.44046 5.50148 5.70319 5.75612 5.86190 5.89719 6.14465 6.39290 6.75690 7.23305 7.44415 7.95076 8.34809 9.23122 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013114 B = 0.002675 C = 0.002442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.688104 B =10466.301259 C =11462.478155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.123 3.877 3 H 0.031 0.969 4 C 0.143 3.857 5 N -0.611 5.611 6 C 0.168 3.832 7 C -0.259 4.259 8 H 0.062 0.938 9 C -0.045 4.045 10 N -0.920 5.920 11 Si 0.953 3.047 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.303 1.303 15 N -0.688 5.688 16 C 0.507 3.493 17 O -0.587 6.587 18 C 0.082 3.918 19 H 0.125 0.875 20 C -0.154 4.154 21 O -0.384 6.384 22 C 0.095 3.905 23 C -0.111 4.111 24 C -0.075 4.075 25 C -0.162 4.162 26 C 0.083 3.917 27 F -0.147 7.147 28 C -0.161 4.161 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.009 0.991 37 H 0.036 0.964 38 H 0.243 0.757 39 H 0.405 0.595 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.030 0.970 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.149 0.851 46 H 0.152 0.848 47 H 0.153 0.847 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 -7.118 -15.392 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 H 0.049 0.951 4 C 0.016 3.984 5 N -0.334 5.334 6 C 0.024 3.976 7 C -0.389 4.389 8 H 0.080 0.920 9 C -0.241 4.241 10 N -0.566 5.566 11 Si 0.783 3.217 12 H -0.196 1.196 13 H -0.216 1.216 14 H -0.231 1.231 15 N -0.339 5.339 16 C 0.293 3.707 17 O -0.467 6.467 18 C 0.021 3.979 19 H 0.143 0.857 20 C -0.212 4.212 21 O -0.303 6.303 22 C 0.019 3.981 23 C -0.111 4.111 24 C -0.093 4.093 25 C -0.181 4.181 26 C 0.064 3.936 27 F -0.126 7.126 28 C -0.180 4.180 29 C -0.093 4.093 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.079 0.921 34 H 0.097 0.903 35 H 0.043 0.957 36 H 0.028 0.972 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.242 0.758 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.049 0.951 43 H 0.100 0.900 44 H 0.102 0.898 45 H 0.167 0.833 46 H 0.170 0.830 47 H 0.170 0.830 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.486 -6.080 -15.473 19.656 hybrid contribution 1.313 0.848 0.243 1.582 sum -9.173 -5.232 -15.231 18.534 Atomic orbital electron populations 1.22015 0.93664 1.02987 1.01738 1.21661 0.94032 0.96292 0.86496 0.95063 1.21364 0.83372 0.99280 0.94369 1.44074 1.00774 1.20488 1.68049 1.20758 0.94189 0.85949 0.96747 1.19417 0.95139 1.10694 1.13688 0.92034 1.25599 1.00334 1.00748 0.97438 1.70146 1.16765 1.46627 1.23092 0.85416 0.79527 0.78596 0.78161 1.19557 1.21577 1.23071 1.45666 1.65779 1.13987 1.08514 1.20972 0.76880 0.87031 0.85795 1.90635 1.52074 1.18086 1.85941 1.21928 0.98840 0.91860 0.85251 0.85733 1.22109 0.94520 1.00971 1.03592 1.88119 1.93152 1.34875 1.14144 1.21639 1.02676 0.93357 0.80409 1.19891 0.94073 0.99575 0.97543 1.21209 0.98089 0.96013 0.94010 1.21369 0.98383 0.98209 1.00110 1.18013 0.95742 0.90106 0.89751 1.91478 1.97276 1.62866 1.60989 1.21365 0.97457 1.00536 0.98647 1.21194 0.99384 0.93745 0.94929 0.90714 0.94380 0.90144 0.92128 0.90273 0.95739 0.97236 0.94528 0.94767 0.75843 0.90318 0.88802 0.95075 0.90013 0.89826 0.83325 0.83028 0.82959 0.83439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.01 9.48 71.98 0.68 -3.33 16 2 C 0.12 4.46 2.88 44.99 0.13 4.59 16 3 H 0.03 1.47 7.58 -2.39 -0.02 1.46 16 4 C 0.14 5.12 5.33 86.38 0.46 5.58 16 5 N -0.61 -28.04 2.78 -726.94 -2.02 -30.06 16 6 C 0.17 7.22 7.59 127.77 0.97 8.19 16 7 C -0.26 -13.87 9.66 84.03 0.81 -13.06 16 8 H 0.06 3.30 7.85 -2.91 -0.02 3.28 16 9 C -0.05 -2.50 5.14 84.86 0.44 -2.07 16 10 N -0.92 -52.22 10.64 21.65 0.23 -51.99 16 11 Si 0.95 45.91 29.57 68.60 2.03 47.94 16 12 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 14 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 15 N -0.69 -23.60 4.31 -442.53 -1.91 -25.50 16 16 C 0.51 19.37 7.20 87.66 0.63 20.00 16 17 O -0.59 -28.53 16.16 16.00 0.26 -28.27 16 18 C 0.08 2.34 3.14 29.85 0.09 2.43 16 19 H 0.13 2.37 7.79 -2.39 -0.02 2.35 16 20 C -0.15 -4.45 9.42 71.98 0.68 -3.77 16 21 O -0.38 -11.91 9.50 -129.94 -1.24 -13.14 16 22 C 0.09 1.91 5.87 71.24 0.42 2.33 16 23 C -0.11 -2.38 5.51 -19.86 -0.11 -2.49 16 24 C -0.08 -1.53 9.70 22.26 0.22 -1.32 16 25 C -0.16 -3.27 10.03 22.31 0.22 -3.05 16 26 C 0.08 1.82 7.30 22.37 0.16 1.98 16 27 F -0.15 -3.38 17.27 44.97 0.78 -2.61 16 28 C -0.16 -3.23 10.03 22.31 0.22 -3.01 16 29 C -0.07 -1.51 9.70 22.26 0.22 -1.30 16 30 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 2.15 8.03 -2.39 -0.02 2.13 16 34 H 0.08 2.27 7.86 -2.39 -0.02 2.25 16 35 H 0.02 1.11 5.58 -2.38 -0.01 1.10 16 36 H 0.01 0.44 7.33 -2.39 -0.02 0.42 16 37 H 0.04 1.24 7.84 -2.39 -0.02 1.22 16 38 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 39 H 0.41 11.82 6.60 -92.71 -0.61 11.21 16 40 H 0.08 2.23 6.25 -2.39 -0.01 2.22 16 41 H 0.09 2.00 7.87 -2.39 -0.02 1.98 16 42 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.08 1.25 8.03 -2.39 -0.02 1.23 16 44 H 0.08 1.29 7.82 -2.39 -0.02 1.27 16 45 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 46 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 47 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 48 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -75.26 399.06 4.73 -70.54 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.35 Total: 21.40 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 6.25 Total: 11.70 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -3.70 Total: -107.56 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -0.98 Total: -41.42 kcal Atomic # 9 Polarization: -3.38 SS G_CDS: 0.78 Total: -2.61 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -75.26 4.73 -70.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716503605.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.472 kcal (2) G-P(sol) polarization free energy of solvation -75.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds