Wall clock time and date at job start Tue Mar 31 2020 21:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46755 * 2 1 4 4 O 1.42893 * 109.47108 * 239.99495 * 2 1 3 5 5 C 1.35949 * 116.99939 * 88.24727 * 4 2 1 6 6 C 1.38715 * 120.02943 * 355.40291 * 5 4 2 7 7 C 1.38149 * 119.96740 * 180.29522 * 6 5 4 8 8 C 1.38453 * 120.03037 * 359.45490 * 7 6 5 9 9 F 1.35099 * 119.97054 * 180.27245 * 8 7 6 10 10 C 1.38458 * 120.05933 * 0.25190 * 8 7 6 11 11 C 1.38144 * 120.03318 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46854 * 119.99556 * 2 1 3 13 13 O 1.21284 * 119.99979 * 119.99997 * 12 2 1 14 14 N 1.34779 * 120.00207 * 300.00003 * 12 2 1 15 15 C 1.46498 * 119.99883 * 0.02562 * 14 12 2 16 16 C 1.46505 * 119.99969 * 179.97438 * 14 12 2 17 17 C 1.53004 * 109.46783 * 90.00168 * 16 14 12 18 18 C 1.52998 * 109.46713 * 179.97438 * 17 16 14 19 19 N 1.46508 * 109.46810 * 179.97438 * 18 17 16 20 20 C 1.46502 * 119.99810 * 90.00362 * 19 18 17 21 21 C 1.36935 * 119.99753 * 270.00193 * 19 18 17 22 22 H 1.08001 * 119.99619 * 140.18599 * 21 19 18 23 23 C 1.38817 * 120.00362 * 320.17582 * 21 19 18 24 24 N 1.31609 * 119.99981 * 160.79652 * 23 21 19 25 25 Si 1.86806 * 119.99790 * 340.79649 * 23 21 19 26 26 H 1.48501 * 109.47097 * 95.34390 * 25 23 21 27 27 H 1.48493 * 109.47143 * 215.34979 * 25 23 21 28 28 H 1.48500 * 109.47041 * 335.34739 * 25 23 21 29 29 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47342 * 300.00149 * 1 2 3 31 31 H 1.09003 * 109.47105 * 60.00455 * 1 2 3 32 32 H 1.07998 * 120.01237 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.98445 * 179.72554 * 7 6 5 34 34 H 1.08000 * 119.98214 * 180.02562 * 10 8 7 35 35 H 1.07997 * 120.01763 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.47240 * 90.00154 * 15 14 12 37 37 H 1.09007 * 109.46888 * 209.99835 * 15 14 12 38 38 H 1.09003 * 109.47485 * 329.99894 * 15 14 12 39 39 H 1.08997 * 109.47178 * 210.00122 * 16 14 12 40 40 H 1.08995 * 109.47304 * 330.00139 * 16 14 12 41 41 H 1.08997 * 109.47226 * 299.99924 * 17 16 14 42 42 H 1.08997 * 109.46706 * 59.99946 * 17 16 14 43 43 H 1.08997 * 109.47366 * 300.00027 * 18 17 16 44 44 H 1.08995 * 109.47186 * 60.00086 * 18 17 16 45 45 H 1.09001 * 109.46948 * 95.02560 * 20 19 18 46 46 H 1.09000 * 109.46627 * 215.02876 * 20 19 18 47 47 H 1.09004 * 109.47114 * 335.02573 * 20 19 18 48 48 H 0.97001 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1771 0.0776 -2.2867 6 6 1.8024 1.4132 -2.2906 7 6 1.9709 2.1739 -3.4314 8 6 2.5239 1.6068 -4.5669 9 9 2.6932 2.3533 -5.6801 10 6 2.9039 0.2754 -4.5625 11 6 2.7313 -0.4891 -3.4250 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 0.8640 0.9410 2.5889 16 6 2.1945 -0.9407 3.6509 17 6 3.5425 -0.3488 4.0675 18 6 4.0517 -1.0699 5.3172 19 7 5.3427 -0.5036 5.7158 20 6 5.3907 0.6263 6.6472 21 6 6.5044 -1.0303 5.2178 22 1 7.3169 -0.3765 4.9368 23 6 6.6380 -2.4046 5.0743 24 7 7.5574 -2.8960 4.2710 25 14 5.5129 -3.5563 6.0216 26 1 4.3640 -3.9425 5.1636 27 1 6.2678 -4.7729 6.4152 28 1 5.0124 -2.8688 7.2390 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3752 1.8569 -1.4035 33 1 1.6752 3.2126 -3.4360 34 1 3.3356 -0.1656 -5.4489 35 1 3.0282 -1.5275 -3.4217 36 1 -0.1839 0.6427 2.6225 37 1 1.1217 1.4667 3.5085 38 1 1.0271 1.5998 1.7359 39 1 1.4765 -0.8151 4.4612 40 1 2.3152 -2.0019 3.4337 41 1 4.2605 -0.4744 3.2572 42 1 3.4217 0.7125 4.2847 43 1 3.3335 -0.9439 6.1274 44 1 4.1723 -2.1313 5.1004 45 1 5.5350 0.2548 7.6617 46 1 6.2185 1.2829 6.3794 47 1 4.4543 1.1816 6.5933 48 1 7.6505 -3.8563 4.1704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717214613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:28 Heat of formation + Delta-G solvation = -50.635963 kcal Electronic energy + Delta-G solvation = -29402.080980 eV Core-core repulsion = 25180.774155 eV Total energy + Delta-G solvation = -4221.306825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.07431 -40.96104 -39.60102 -37.49317 -36.41219 -35.53950 -33.03818 -31.77701 -31.41105 -30.64359 -29.48522 -27.28252 -26.46627 -25.72299 -24.44210 -23.44661 -22.57963 -21.64583 -20.62140 -19.46917 -18.85941 -17.64193 -17.38761 -16.79735 -16.45828 -16.07485 -15.91400 -15.70504 -15.38459 -15.10972 -14.98432 -14.51962 -14.06443 -13.98423 -13.73491 -13.53493 -13.50742 -13.27465 -13.22160 -13.02320 -12.80277 -12.64741 -12.50135 -12.11804 -12.04033 -11.93400 -11.77990 -11.34376 -11.25295 -11.09114 -11.07221 -10.81035 -10.44587 -10.38266 -9.72795 -9.66754 -9.52470 -9.48307 -8.68450 -8.46903 -8.39242 -6.73388 -5.92595 -3.39009 0.81181 0.90031 2.35328 2.54847 3.24523 3.27473 3.36234 3.49237 3.54520 3.99929 4.12324 4.30310 4.37105 4.47258 4.54676 4.57422 4.76978 4.80993 4.94905 4.99818 5.05778 5.13024 5.20405 5.26597 5.32712 5.40501 5.42909 5.54189 5.68196 5.73613 5.76647 5.84438 5.87382 5.89456 5.99528 6.10025 6.25329 6.32701 6.35687 6.50085 6.65606 6.71999 6.80132 7.00830 7.05860 7.30065 8.12287 8.14880 8.44338 9.03734 9.76191 10.16962 11.22913 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002529 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.951417 B =11067.553647 C =11726.352044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.100 0.900 4 O -0.279 6.279 5 C 0.127 3.873 6 C -0.187 4.187 7 C -0.111 4.111 8 C 0.055 3.945 9 F -0.143 7.143 10 C -0.110 4.110 11 C -0.119 4.119 12 C 0.512 3.488 13 O -0.501 6.501 14 N -0.611 5.611 15 C 0.072 3.928 16 C 0.116 3.884 17 C -0.147 4.147 18 C 0.142 3.858 19 N -0.613 5.613 20 C 0.127 3.873 21 C -0.273 4.273 22 H 0.076 0.924 23 C 0.037 3.963 24 N -0.900 5.900 25 Si 0.883 3.117 26 H -0.283 1.283 27 H -0.301 1.301 28 H -0.270 1.270 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.145 0.855 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.053 0.947 43 H 0.037 0.963 44 H 0.053 0.947 45 H 0.008 0.992 46 H 0.037 0.963 47 H 0.029 0.971 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.830 11.474 -12.439 26.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.006 3.994 3 H 0.118 0.882 4 O -0.191 6.191 5 C 0.081 3.919 6 C -0.205 4.205 7 C -0.130 4.130 8 C 0.036 3.964 9 F -0.121 7.121 10 C -0.129 4.129 11 C -0.138 4.138 12 C 0.297 3.703 13 O -0.374 6.374 14 N -0.346 5.346 15 C -0.071 4.071 16 C -0.007 4.007 17 C -0.188 4.188 18 C 0.015 3.985 19 N -0.337 5.337 20 C -0.018 4.018 21 C -0.402 4.402 22 H 0.094 0.906 23 C -0.164 4.164 24 N -0.541 5.541 25 Si 0.714 3.286 26 H -0.211 1.211 27 H -0.230 1.230 28 H -0.195 1.195 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.071 0.929 45 H 0.026 0.974 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.292 10.610 -12.544 25.340 hybrid contribution -0.582 -0.238 0.313 0.702 sum -19.874 10.372 -12.231 25.537 Atomic orbital electron populations 1.22568 0.92578 1.04808 1.04347 1.22253 0.95750 0.97123 0.84232 0.88249 1.86261 1.80677 1.35440 1.16717 1.19115 0.95336 0.90081 0.87366 1.21137 1.06341 0.93425 0.99631 1.20908 0.99645 1.00819 0.91593 1.17578 1.04853 0.90089 0.83928 1.91490 1.93802 1.76274 1.50565 1.20984 1.00512 0.92195 0.99230 1.20356 1.01505 1.01615 0.90331 1.20021 0.81155 0.85250 0.83886 1.90824 1.35566 1.25242 1.85726 1.47779 1.51655 1.29447 1.05753 1.22005 0.94392 0.87319 1.03359 1.21662 0.96255 0.97991 0.84746 1.22504 0.95239 0.99618 1.01477 1.21079 0.87373 0.97014 0.92993 1.44015 1.01830 1.37484 1.50400 1.21050 0.98317 0.90206 0.92255 1.18741 0.93503 0.90265 1.37642 0.90632 1.25517 0.96408 0.97168 0.97287 1.69832 1.35781 1.12725 1.35764 0.86813 0.80078 0.80282 0.81456 1.21117 1.22958 1.19515 0.90587 0.89159 0.90782 0.84352 0.84420 0.83925 0.83754 0.92055 0.90372 0.91325 0.90688 0.89798 0.90780 0.92853 0.94412 0.92924 0.97392 0.94417 0.95257 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.39 8.91 37.16 0.33 -1.06 16 2 C 0.07 0.73 1.82 -27.88 -0.05 0.68 16 3 H 0.10 0.88 5.31 -51.93 -0.28 0.60 16 4 O -0.28 -3.77 9.32 -39.49 -0.37 -4.14 16 5 C 0.13 1.44 6.63 -39.23 -0.26 1.18 16 6 C -0.19 -1.68 8.43 -39.44 -0.33 -2.01 16 7 C -0.11 -0.96 10.02 -39.53 -0.40 -1.35 16 8 C 0.05 0.54 7.30 -39.42 -0.29 0.25 16 9 F -0.14 -1.49 17.27 2.25 0.04 -1.45 16 10 C -0.11 -1.03 10.02 -39.53 -0.40 -1.43 16 11 C -0.12 -1.26 9.98 -39.44 -0.39 -1.65 16 12 C 0.51 7.82 7.15 -10.99 -0.08 7.74 16 13 O -0.50 -10.52 16.08 -14.36 -0.23 -10.76 16 14 N -0.61 -7.85 2.87 -181.57 -0.52 -8.37 16 15 C 0.07 0.54 8.80 59.85 0.53 1.06 16 16 C 0.12 1.76 5.41 -4.04 -0.02 1.74 16 17 C -0.15 -2.76 5.86 -26.73 -0.16 -2.92 16 18 C 0.14 3.07 4.45 -4.04 -0.02 3.05 16 19 N -0.61 -15.02 2.45 -181.11 -0.44 -15.46 16 20 C 0.13 2.57 10.70 59.85 0.64 3.21 16 21 C -0.27 -7.93 9.95 -15.06 -0.15 -8.08 16 22 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 23 C 0.04 1.11 5.34 -17.43 -0.09 1.02 16 24 N -0.90 -28.64 13.97 55.49 0.78 -27.86 16 25 Si 0.88 23.08 24.93 -169.99 -4.24 18.84 16 26 H -0.28 -7.22 6.72 56.52 0.38 -6.84 16 27 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 28 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 0.47 4.53 -51.93 -0.24 0.24 16 31 H 0.07 0.45 7.35 -51.93 -0.38 0.07 16 32 H 0.14 0.91 5.59 -52.49 -0.29 0.62 16 33 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 36 H 0.06 0.33 6.95 -51.93 -0.36 -0.03 16 37 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 38 H 0.07 0.38 6.01 -51.93 -0.31 0.07 16 39 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.08 1.50 7.42 -51.93 -0.39 1.12 16 41 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.04 0.70 8.07 -51.93 -0.42 0.29 16 44 H 0.05 1.28 3.33 -51.93 -0.17 1.11 16 45 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.04 0.75 8.08 -51.93 -0.42 0.33 16 47 H 0.03 0.49 8.03 -51.93 -0.42 0.07 16 48 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 388.53 15.07 5.85 5.85 Total: -1.00 -36.99 388.53 -7.32 -44.31 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -7.05 Total: -2.40 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: -1.14 Total: 1.43 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: -0.19 Total: -51.70 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.60 Total: -14.89 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -4.24 Total: 18.84 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.99 -7.32 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717214613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.329 kcal (2) G-P(sol) polarization free energy of solvation -36.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds