Wall clock time and date at job start Tue Mar 31 2020 21:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46755 * 2 1 4 4 O 1.42893 * 109.47108 * 239.99495 * 2 1 3 5 5 C 1.35949 * 116.99939 * 88.24727 * 4 2 1 6 6 C 1.38715 * 120.02943 * 355.40291 * 5 4 2 7 7 C 1.38149 * 119.96740 * 180.29522 * 6 5 4 8 8 C 1.38453 * 120.03037 * 359.45490 * 7 6 5 9 9 F 1.35099 * 119.97054 * 180.27245 * 8 7 6 10 10 C 1.38458 * 120.05933 * 0.25190 * 8 7 6 11 11 C 1.38144 * 120.03318 * 0.02562 * 10 8 7 12 12 C 1.50699 * 109.46854 * 119.99556 * 2 1 3 13 13 O 1.21284 * 119.99979 * 119.99997 * 12 2 1 14 14 N 1.34779 * 120.00207 * 300.00003 * 12 2 1 15 15 C 1.46498 * 119.99883 * 0.02562 * 14 12 2 16 16 C 1.46505 * 119.99969 * 179.97438 * 14 12 2 17 17 C 1.53004 * 109.46783 * 90.00168 * 16 14 12 18 18 C 1.52998 * 109.46713 * 179.97438 * 17 16 14 19 19 N 1.46508 * 109.46810 * 179.97438 * 18 17 16 20 20 C 1.46502 * 119.99810 * 90.00362 * 19 18 17 21 21 C 1.36935 * 119.99753 * 270.00193 * 19 18 17 22 22 H 1.08001 * 119.99619 * 140.18599 * 21 19 18 23 23 C 1.38817 * 120.00362 * 320.17582 * 21 19 18 24 24 N 1.31609 * 119.99981 * 160.79652 * 23 21 19 25 25 Si 1.86806 * 119.99790 * 340.79649 * 23 21 19 26 26 H 1.48501 * 109.47097 * 95.34390 * 25 23 21 27 27 H 1.48493 * 109.47143 * 215.34979 * 25 23 21 28 28 H 1.48500 * 109.47041 * 335.34739 * 25 23 21 29 29 H 1.08997 * 109.47408 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47342 * 300.00149 * 1 2 3 31 31 H 1.09003 * 109.47105 * 60.00455 * 1 2 3 32 32 H 1.07998 * 120.01237 * 0.02562 * 6 5 4 33 33 H 1.08000 * 119.98445 * 179.72554 * 7 6 5 34 34 H 1.08000 * 119.98214 * 180.02562 * 10 8 7 35 35 H 1.07997 * 120.01763 * 180.02562 * 11 10 8 36 36 H 1.09000 * 109.47240 * 90.00154 * 15 14 12 37 37 H 1.09007 * 109.46888 * 209.99835 * 15 14 12 38 38 H 1.09003 * 109.47485 * 329.99894 * 15 14 12 39 39 H 1.08997 * 109.47178 * 210.00122 * 16 14 12 40 40 H 1.08995 * 109.47304 * 330.00139 * 16 14 12 41 41 H 1.08997 * 109.47226 * 299.99924 * 17 16 14 42 42 H 1.08997 * 109.46706 * 59.99946 * 17 16 14 43 43 H 1.08997 * 109.47366 * 300.00027 * 18 17 16 44 44 H 1.08995 * 109.47186 * 60.00086 * 18 17 16 45 45 H 1.09001 * 109.46948 * 95.02560 * 20 19 18 46 46 H 1.09000 * 109.46627 * 215.02876 * 20 19 18 47 47 H 1.09004 * 109.47114 * 335.02573 * 20 19 18 48 48 H 0.97001 * 120.00036 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 2.1771 0.0776 -2.2867 6 6 1.8024 1.4132 -2.2906 7 6 1.9709 2.1739 -3.4314 8 6 2.5239 1.6068 -4.5669 9 9 2.6932 2.3533 -5.6801 10 6 2.9039 0.2754 -4.5625 11 6 2.7313 -0.4891 -3.4250 12 6 2.0323 -0.7103 1.2305 13 8 2.7295 -1.6964 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 0.8640 0.9410 2.5889 16 6 2.1945 -0.9407 3.6509 17 6 3.5425 -0.3488 4.0675 18 6 4.0517 -1.0699 5.3172 19 7 5.3427 -0.5036 5.7158 20 6 5.3907 0.6263 6.6472 21 6 6.5044 -1.0303 5.2178 22 1 7.3169 -0.3765 4.9368 23 6 6.6380 -2.4046 5.0743 24 7 7.5574 -2.8960 4.2710 25 14 5.5129 -3.5563 6.0216 26 1 4.3640 -3.9425 5.1636 27 1 6.2678 -4.7729 6.4152 28 1 5.0124 -2.8688 7.2390 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.3752 1.8569 -1.4035 33 1 1.6752 3.2126 -3.4360 34 1 3.3356 -0.1656 -5.4489 35 1 3.0282 -1.5275 -3.4217 36 1 -0.1839 0.6427 2.6225 37 1 1.1217 1.4667 3.5085 38 1 1.0271 1.5998 1.7359 39 1 1.4765 -0.8151 4.4612 40 1 2.3152 -2.0019 3.4337 41 1 4.2605 -0.4744 3.2572 42 1 3.4217 0.7125 4.2847 43 1 3.3335 -0.9439 6.1274 44 1 4.1723 -2.1313 5.1004 45 1 5.5350 0.2548 7.6617 46 1 6.2185 1.2829 6.3794 47 1 4.4543 1.1816 6.5933 48 1 7.6505 -3.8563 4.1704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717214613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:27 Heat of formation + Delta-G solvation = -74.884639 kcal Electronic energy + Delta-G solvation = -29403.132481 eV Core-core repulsion = 25180.774155 eV Total energy + Delta-G solvation = -4222.358327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -49.84631 -41.87162 -40.58204 -38.42005 -38.01562 -36.85110 -34.30782 -33.58696 -32.40231 -31.77034 -30.25389 -28.29617 -27.96660 -27.25281 -25.35942 -24.33239 -23.70216 -22.86603 -22.38361 -20.49397 -19.64631 -18.80475 -18.43445 -18.31294 -17.52086 -17.33417 -17.04525 -16.77818 -16.53885 -16.16821 -15.80172 -15.76694 -15.34173 -15.27564 -14.97882 -14.79229 -14.48635 -14.43254 -14.22823 -14.09375 -13.92152 -13.77144 -13.52524 -13.39037 -13.34168 -12.97842 -12.86472 -12.76562 -12.54981 -12.41012 -12.26791 -12.21737 -11.99640 -11.80420 -11.74371 -11.35542 -10.83999 -10.68876 -10.23346 -9.76297 -9.18309 -8.74146 -8.23766 -5.66654 0.10269 0.13903 1.27397 1.34829 1.43689 1.46350 1.47929 2.38692 2.39573 2.51355 3.01972 3.25149 3.29243 3.43156 3.56631 3.68530 3.79273 3.83641 4.00016 4.10688 4.22748 4.25801 4.28220 4.39599 4.44185 4.52891 4.62938 4.65420 4.66331 4.70783 4.74351 4.80011 4.84468 4.93090 5.03023 5.05126 5.09724 5.12899 5.14222 5.18558 5.21074 5.36290 5.52597 5.64701 5.91743 6.11995 6.17525 6.35062 6.97777 7.05964 7.60594 8.00873 8.95931 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.014225 B = 0.002529 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.951417 B =11067.553647 C =11726.352044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.069 3.931 3 H 0.126 0.874 4 O -0.314 6.314 5 C 0.106 3.894 6 C -0.180 4.180 7 C -0.105 4.105 8 C 0.041 3.959 9 F -0.147 7.147 10 C -0.111 4.111 11 C -0.139 4.139 12 C 0.498 3.502 13 O -0.579 6.579 14 N -0.605 5.605 15 C 0.057 3.943 16 C 0.120 3.880 17 C -0.131 4.131 18 C 0.134 3.866 19 N -0.629 5.629 20 C 0.124 3.876 21 C -0.262 4.262 22 H 0.034 0.966 23 C -0.028 4.028 24 N -0.954 5.954 25 Si 0.954 3.046 26 H -0.279 1.279 27 H -0.308 1.308 28 H -0.246 1.246 29 H 0.058 0.942 30 H 0.120 0.880 31 H 0.094 0.906 32 H 0.168 0.832 33 H 0.166 0.834 34 H 0.158 0.842 35 H 0.138 0.862 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.123 0.877 40 H 0.046 0.954 41 H 0.014 0.986 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.022 0.978 45 H 0.015 0.985 46 H 0.030 0.970 47 H 0.073 0.927 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.017 14.499 -10.982 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.010 3.990 3 H 0.143 0.857 4 O -0.228 6.228 5 C 0.060 3.940 6 C -0.198 4.198 7 C -0.123 4.123 8 C 0.022 3.978 9 F -0.126 7.126 10 C -0.130 4.130 11 C -0.158 4.158 12 C 0.286 3.714 13 O -0.458 6.458 14 N -0.338 5.338 15 C -0.083 4.083 16 C -0.003 4.003 17 C -0.171 4.171 18 C 0.008 3.992 19 N -0.354 5.354 20 C -0.020 4.020 21 C -0.392 4.392 22 H 0.051 0.949 23 C -0.224 4.224 24 N -0.598 5.598 25 Si 0.782 3.218 26 H -0.207 1.207 27 H -0.237 1.237 28 H -0.170 1.170 29 H 0.077 0.923 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.186 0.814 33 H 0.184 0.816 34 H 0.176 0.824 35 H 0.156 0.844 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.065 0.935 41 H 0.033 0.967 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.034 0.966 46 H 0.049 0.951 47 H 0.092 0.908 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -23.554 13.723 -11.053 29.416 hybrid contribution 0.745 -1.022 -0.180 1.277 sum -22.809 12.701 -11.233 28.421 Atomic orbital electron populations 1.22587 0.89368 1.04552 1.06822 1.22433 0.97913 0.97038 0.81649 0.85650 1.86220 1.81487 1.37193 1.17852 1.19378 0.96467 0.91247 0.86883 1.21397 1.05492 0.92174 1.00755 1.21229 0.98368 1.02027 0.90716 1.17814 1.05410 0.90232 0.84342 1.91478 1.93910 1.76314 1.50906 1.21133 1.00183 0.92296 0.99339 1.20478 1.02432 1.01807 0.91079 1.20986 0.80007 0.84567 0.85851 1.90786 1.39182 1.28821 1.86981 1.47868 1.51201 1.30497 1.04227 1.22493 0.95016 0.85467 1.05337 1.21487 0.95705 0.95998 0.87090 1.22249 0.95637 1.01115 0.98146 1.21233 0.86971 0.95378 0.95582 1.44204 1.01298 1.38426 1.51463 1.21193 1.00490 0.88903 0.91371 1.18637 0.94364 0.89881 1.36341 0.94873 1.26260 0.98638 0.99118 0.98362 1.69988 1.38873 1.12840 1.38144 0.85677 0.77927 0.77689 0.80487 1.20679 1.23660 1.16977 0.92278 0.86146 0.88685 0.81448 0.81619 0.82435 0.84381 0.88889 0.88859 0.88913 0.85859 0.93522 0.96747 0.90089 0.89835 0.96026 0.96636 0.95123 0.90843 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.06 8.91 71.98 0.64 -1.42 16 2 C 0.07 1.42 1.82 29.85 0.05 1.47 16 3 H 0.13 1.83 5.31 -2.39 -0.01 1.81 16 4 O -0.31 -8.69 9.32 -73.94 -0.69 -9.37 16 5 C 0.11 2.37 6.63 22.50 0.15 2.52 16 6 C -0.18 -2.79 8.43 22.36 0.19 -2.60 16 7 C -0.10 -1.54 10.02 22.30 0.22 -1.32 16 8 C 0.04 0.76 7.30 22.37 0.16 0.92 16 9 F -0.15 -2.89 17.27 44.97 0.78 -2.11 16 10 C -0.11 -2.06 10.02 22.30 0.22 -1.84 16 11 C -0.14 -3.06 9.98 22.36 0.22 -2.83 16 12 C 0.50 15.27 7.15 87.66 0.63 15.90 16 13 O -0.58 -26.11 16.08 16.00 0.26 -25.86 16 14 N -0.60 -14.19 2.87 -846.74 -2.43 -16.62 16 15 C 0.06 0.55 8.80 127.77 1.12 1.67 16 16 C 0.12 3.45 5.41 86.38 0.47 3.91 16 17 C -0.13 -4.73 5.86 30.60 0.18 -4.55 16 18 C 0.13 5.51 4.45 86.38 0.38 5.89 16 19 N -0.63 -30.16 2.45 -726.91 -1.78 -31.94 16 20 C 0.12 4.67 10.70 127.77 1.37 6.04 16 21 C -0.26 -15.74 9.95 84.03 0.84 -14.90 16 22 H 0.03 2.22 8.06 -2.91 -0.02 2.20 16 23 C -0.03 -1.73 5.34 84.86 0.45 -1.27 16 24 N -0.95 -64.07 13.97 21.65 0.30 -63.77 16 25 Si 0.95 48.98 24.93 68.60 1.71 50.69 16 26 H -0.28 -14.01 6.72 99.48 0.67 -13.34 16 27 H -0.31 -15.94 7.11 99.48 0.71 -15.23 16 28 H -0.25 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.12 0.62 4.53 -2.39 -0.01 0.61 16 31 H 0.09 0.75 7.35 -2.39 -0.02 0.73 16 32 H 0.17 1.47 5.59 -2.91 -0.02 1.45 16 33 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 36 H 0.09 0.39 6.95 -2.39 -0.02 0.37 16 37 H 0.09 0.70 8.07 -2.38 -0.02 0.68 16 38 H 0.09 0.48 6.01 -2.39 -0.01 0.46 16 39 H 0.12 2.36 8.07 -2.39 -0.02 2.34 16 40 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 41 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 43 H 0.08 2.70 8.07 -2.39 -0.02 2.68 16 44 H 0.02 1.04 3.33 -2.39 -0.01 1.03 16 45 H 0.02 0.56 8.14 -2.39 -0.02 0.55 16 46 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 47 H 0.07 2.11 8.03 -2.39 -0.02 2.09 16 48 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 Total: -1.00 -90.72 388.53 6.38 -84.35 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: 0.93 Total: 7.04 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 7.31 Total: 7.59 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -3.91 Total: -112.32 kcal Atomic # 8 Polarization: -34.80 SS G_CDS: -0.43 Total: -35.23 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.78 Total: -2.11 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 1.71 Total: 50.69 kcal Total: -90.72 6.38 -84.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717214613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.462 kcal (2) G-P(sol) polarization free energy of solvation -90.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds