Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46923 * 2 1 4 4 N 1.46498 * 109.47042 * 120.00164 * 2 1 3 5 5 C 1.36938 * 119.99884 * 274.99787 * 4 2 1 6 6 H 1.07999 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00177 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47101 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47176 * 209.99990 * 9 7 5 12 12 H 1.48499 * 109.46830 * 329.99755 * 9 7 5 13 13 C 1.52999 * 109.46495 * 240.00019 * 2 1 3 14 14 H 1.09001 * 109.46751 * 175.00199 * 13 2 1 15 15 C 1.52997 * 109.47284 * 294.99897 * 13 2 1 16 16 N 1.46499 * 109.47481 * 55.00419 * 13 2 1 17 17 C 1.34777 * 120.00199 * 154.99940 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 C 1.52996 * 109.47159 * 179.72352 * 19 17 16 21 21 C 1.52994 * 109.47118 * 179.97438 * 20 19 17 22 22 O 1.42906 * 109.47097 * 179.97438 * 21 20 19 23 23 C 1.35941 * 116.99893 * 179.97438 * 22 21 20 24 24 C 1.38703 * 120.03305 * 359.73034 * 23 22 21 25 25 C 1.38151 * 119.96996 * 179.78787 * 24 23 22 26 26 C 1.38453 * 120.03047 * 0.48074 * 25 24 23 27 27 F 1.35103 * 119.96825 * 179.72110 * 26 25 24 28 28 C 1.38455 * 120.05937 * 359.75176 * 26 25 24 29 29 C 1.38151 * 120.03157 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47196 * 59.99384 * 1 2 3 31 31 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46620 * 300.00260 * 1 2 3 33 33 H 0.97000 * 120.00287 * 94.99592 * 4 2 1 34 34 H 0.97002 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47320 * 300.00586 * 15 13 2 36 36 H 1.08993 * 109.47268 * 60.00476 * 15 13 2 37 37 H 1.09006 * 109.47495 * 180.02562 * 15 13 2 38 38 H 0.97000 * 119.99484 * 334.99037 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09004 * 109.47066 * 299.99797 * 20 19 17 42 42 H 1.09000 * 109.47234 * 59.99288 * 20 19 17 43 43 H 1.08998 * 109.46965 * 299.99512 * 21 20 19 44 44 H 1.09003 * 109.47184 * 60.00331 * 21 20 19 45 45 H 1.08003 * 120.01280 * 359.97438 * 24 23 22 46 46 H 1.07998 * 119.98696 * 180.21169 * 25 24 23 47 47 H 1.08000 * 119.98478 * 179.97438 * 28 26 25 48 48 H 1.07992 * 120.01267 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6617 3.5089 8 7 2.9254 -1.9389 3.4499 9 14 2.7915 0.2703 5.1180 10 1 1.5241 0.1792 5.8865 11 1 3.8964 -0.3229 5.9132 12 1 3.0964 1.6954 4.8331 13 6 2.0399 -0.7213 -1.2493 14 1 3.1262 -0.6444 -1.2952 15 6 1.6351 -2.1954 -1.1880 16 7 1.4558 -0.1036 -2.4424 17 6 2.0911 -0.1938 -3.6276 18 8 3.1467 -0.7859 -3.7063 19 6 1.4933 0.4469 -4.8537 20 6 2.4099 0.2041 -6.0543 21 6 1.8027 0.8540 -7.2992 22 8 2.6592 0.6277 -8.4206 23 6 2.2622 1.1430 -9.6142 24 6 1.0704 1.8467 -9.7046 25 6 0.6703 2.3737 -10.9174 26 6 1.4536 2.1911 -12.0444 27 9 1.0584 2.7021 -13.2310 28 6 2.6412 1.4847 -11.9566 29 6 3.0459 0.9606 -10.7441 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2487 -2.3962 4.2419 35 1 2.0697 -2.6550 -0.3002 36 1 0.5489 -2.2724 -1.1421 37 1 1.9987 -2.7095 -2.0778 38 1 0.6117 0.3701 -2.3794 39 1 0.5138 0.0110 -5.0504 40 1 1.3874 1.5190 -4.6883 41 1 3.3895 0.6399 -5.8576 42 1 2.5160 -0.8681 -6.2196 43 1 0.8234 0.4177 -7.4957 44 1 1.6965 1.9262 -7.1342 45 1 0.4568 1.9852 -8.8267 46 1 -0.2559 2.9246 -10.9874 47 1 3.2510 1.3426 -12.8365 48 1 3.9720 0.4094 -10.6760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717421395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = -93.991425 kcal Electronic energy + Delta-G solvation = -27625.774156 eV Core-core repulsion = 23402.587297 eV Total energy + Delta-G solvation = -4223.186859 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.22269 -40.57794 -39.81411 -37.81666 -37.01440 -34.09059 -33.92089 -31.86155 -31.70690 -30.02781 -29.40213 -28.24191 -27.38357 -24.50140 -24.04608 -23.25816 -22.65737 -21.76521 -20.28592 -19.23730 -18.75090 -17.86606 -17.52803 -17.22093 -16.83771 -16.70942 -15.95644 -15.59423 -15.36195 -15.15388 -14.76948 -14.66424 -14.28868 -14.13015 -13.95783 -13.67160 -13.54432 -13.40079 -13.05042 -12.83965 -12.68119 -12.40369 -12.37033 -11.97189 -11.84767 -11.67060 -11.57516 -11.32504 -11.21356 -10.96211 -10.94351 -10.86284 -10.49920 -10.28705 -10.01145 -9.83272 -9.69535 -9.62252 -8.97228 -8.83037 -8.56103 -7.03600 -5.81289 -3.11039 0.65390 0.74342 2.59971 2.72287 3.08696 3.35309 3.41104 3.46600 3.47934 3.85444 4.16698 4.27120 4.46379 4.49701 4.56305 4.59702 4.64245 4.78213 4.90155 4.96533 5.01790 5.14902 5.25405 5.35853 5.38447 5.45088 5.59801 5.61954 5.62239 5.66370 5.72764 5.73135 5.79919 5.93846 6.03702 6.12205 6.22722 6.26061 6.36492 6.44409 6.59915 6.68226 6.89134 6.91097 7.03751 7.65076 7.65794 8.34298 8.37786 9.48460 10.03758 10.38418 11.41236 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.001402 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.334940 B =19973.431141 C =20169.782421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.242 4.242 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.104 4.104 21 C 0.058 3.942 22 O -0.308 6.308 23 C 0.126 3.874 24 C -0.183 4.183 25 C -0.112 4.112 26 C 0.054 3.946 27 F -0.142 7.142 28 C -0.112 4.112 29 C -0.125 4.125 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.256 0.744 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.049 0.951 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.709 7.583 -29.635 31.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.372 5.372 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.017 4.017 22 O -0.222 6.222 23 C 0.080 3.920 24 C -0.202 4.202 25 C -0.131 4.131 26 C 0.035 3.965 27 F -0.121 7.121 28 C -0.131 4.131 29 C -0.144 4.144 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.233 0.767 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.753 7.172 -29.501 30.900 hybrid contribution -0.679 0.620 0.865 1.263 sum -6.432 7.792 -28.635 30.365 Atomic orbital electron populations 1.22537 0.99361 1.01246 0.99697 1.20362 0.92149 0.95578 0.86220 0.93104 1.42453 1.78222 1.10800 1.04826 1.19223 1.36980 0.93959 0.87176 0.91127 1.24743 1.01880 0.95994 0.98110 1.69657 1.50605 1.08683 1.28977 0.86186 0.77308 0.78805 0.83838 1.21717 1.21736 1.20760 1.21329 0.99031 0.92858 0.83727 0.89450 1.22135 1.01435 0.95867 1.02276 1.46270 1.25804 1.56692 1.08480 1.20447 0.85053 0.80382 0.84606 1.90728 1.22512 1.42940 1.85554 1.21528 1.00521 1.02659 0.93132 1.21227 0.99861 1.03000 0.90108 1.22927 0.93421 1.00696 0.84647 1.86118 1.48523 1.72483 1.15029 1.19058 0.93088 0.93660 0.86176 1.21163 0.97473 1.02621 0.98895 1.20956 1.00274 1.00552 0.91292 1.17593 0.96134 1.01205 0.81562 1.91496 1.90815 1.85416 1.44392 1.20981 0.95552 0.97939 0.98644 1.20338 1.01208 1.03184 0.89628 0.94894 0.92817 0.92415 0.77770 0.93412 0.90535 0.92580 0.93141 0.76683 0.88694 0.88628 0.89754 0.89806 0.91675 0.91649 0.84327 0.84446 0.84027 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.01 37.16 0.33 -2.35 16 2 C 0.17 3.12 2.93 -67.93 -0.20 2.92 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -17.30 5.03 -53.43 -0.27 -17.57 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 9 Si 0.91 22.00 29.55 -169.99 -5.02 16.98 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.14 2.24 2.62 -67.93 -0.18 2.06 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.62 9.00 37.16 0.33 -2.28 16 16 N -0.72 -9.05 4.99 -53.81 -0.27 -9.32 16 17 C 0.51 6.47 7.79 -10.98 -0.09 6.39 16 18 O -0.54 -9.29 15.64 5.55 0.09 -9.20 16 19 C -0.14 -1.05 5.70 -27.88 -0.16 -1.21 16 20 C -0.10 -0.88 4.87 -26.74 -0.13 -1.01 16 21 C 0.06 0.38 4.74 37.15 0.18 0.56 16 22 O -0.31 -2.75 10.14 -19.56 -0.20 -2.95 16 23 C 0.13 1.02 6.69 -39.23 -0.26 0.75 16 24 C -0.18 -1.22 9.04 -39.44 -0.36 -1.58 16 25 C -0.11 -0.75 10.02 -39.53 -0.40 -1.15 16 26 C 0.05 0.42 7.30 -39.42 -0.29 0.13 16 27 F -0.14 -1.23 17.27 2.25 0.04 -1.20 16 28 C -0.11 -0.77 10.02 -39.53 -0.40 -1.16 16 29 C -0.12 -0.91 9.99 -39.44 -0.39 -1.31 16 30 H 0.03 0.39 6.29 -51.93 -0.33 0.07 16 31 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.39 9.86 5.77 -40.82 -0.24 9.63 16 34 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 35 H 0.08 1.42 6.29 -51.93 -0.33 1.10 16 36 H 0.06 0.85 6.57 -51.93 -0.34 0.51 16 37 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.90 6.58 -40.82 -0.27 3.63 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 42 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 43 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 44 H 0.07 0.33 7.68 -51.93 -0.40 -0.06 16 45 H 0.14 0.64 6.30 -52.48 -0.33 0.31 16 46 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 396.56 15.07 5.98 5.98 Total: -1.00 -32.90 396.56 -8.30 -41.20 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -7.13 Total: 9.31 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.24 Total: -6.31 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: 0.19 Total: -53.80 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.11 Total: -12.15 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.20 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.90 -8.30 -41.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.792 kcal (2) G-P(sol) polarization free energy of solvation -32.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds