Wall clock time and date at job start Tue Mar 31 2020 20:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46923 * 2 1 4 4 N 1.46498 * 109.47042 * 120.00164 * 2 1 3 5 5 C 1.36938 * 119.99884 * 274.99787 * 4 2 1 6 6 H 1.07999 * 119.99848 * 359.97438 * 5 4 2 7 7 C 1.38808 * 119.99936 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00216 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 120.00177 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47101 * 89.99764 * 9 7 5 11 11 H 1.48500 * 109.47176 * 209.99990 * 9 7 5 12 12 H 1.48499 * 109.46830 * 329.99755 * 9 7 5 13 13 C 1.52999 * 109.46495 * 240.00019 * 2 1 3 14 14 H 1.09001 * 109.46751 * 175.00199 * 13 2 1 15 15 C 1.52997 * 109.47284 * 294.99897 * 13 2 1 16 16 N 1.46499 * 109.47481 * 55.00419 * 13 2 1 17 17 C 1.34777 * 120.00199 * 154.99940 * 16 13 2 18 18 O 1.21283 * 119.99750 * 359.97438 * 17 16 13 19 19 C 1.50702 * 119.99928 * 180.27479 * 17 16 13 20 20 C 1.52996 * 109.47159 * 179.72352 * 19 17 16 21 21 C 1.52994 * 109.47118 * 179.97438 * 20 19 17 22 22 O 1.42906 * 109.47097 * 179.97438 * 21 20 19 23 23 C 1.35941 * 116.99893 * 179.97438 * 22 21 20 24 24 C 1.38703 * 120.03305 * 359.73034 * 23 22 21 25 25 C 1.38151 * 119.96996 * 179.78787 * 24 23 22 26 26 C 1.38453 * 120.03047 * 0.48074 * 25 24 23 27 27 F 1.35103 * 119.96825 * 179.72110 * 26 25 24 28 28 C 1.38455 * 120.05937 * 359.75176 * 26 25 24 29 29 C 1.38151 * 120.03157 * 0.02562 * 28 26 25 30 30 H 1.08999 * 109.47196 * 59.99384 * 1 2 3 31 31 H 1.08995 * 109.47439 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46620 * 300.00260 * 1 2 3 33 33 H 0.97000 * 120.00287 * 94.99592 * 4 2 1 34 34 H 0.97002 * 120.00443 * 180.02562 * 8 7 5 35 35 H 1.09007 * 109.47320 * 300.00586 * 15 13 2 36 36 H 1.08993 * 109.47268 * 60.00476 * 15 13 2 37 37 H 1.09006 * 109.47495 * 180.02562 * 15 13 2 38 38 H 0.97000 * 119.99484 * 334.99037 * 16 13 2 39 39 H 1.09004 * 109.46965 * 299.72211 * 19 17 16 40 40 H 1.08994 * 109.46990 * 59.72065 * 19 17 16 41 41 H 1.09004 * 109.47066 * 299.99797 * 20 19 17 42 42 H 1.09000 * 109.47234 * 59.99288 * 20 19 17 43 43 H 1.08998 * 109.46965 * 299.99512 * 21 20 19 44 44 H 1.09003 * 109.47184 * 60.00331 * 21 20 19 45 45 H 1.08003 * 120.01280 * 359.97438 * 24 23 22 46 46 H 1.07998 * 119.98696 * 180.21169 * 25 24 23 47 47 H 1.08000 * 119.98478 * 179.97438 * 28 26 25 48 48 H 1.07992 * 120.01267 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1492 -0.0075 2.3757 6 1 1.8927 1.0405 2.4241 7 6 2.6124 -0.6617 3.5089 8 7 2.9254 -1.9389 3.4499 9 14 2.7915 0.2703 5.1180 10 1 1.5241 0.1792 5.8865 11 1 3.8964 -0.3229 5.9132 12 1 3.0964 1.6954 4.8331 13 6 2.0399 -0.7213 -1.2493 14 1 3.1262 -0.6444 -1.2952 15 6 1.6351 -2.1954 -1.1880 16 7 1.4558 -0.1036 -2.4424 17 6 2.0911 -0.1938 -3.6276 18 8 3.1467 -0.7859 -3.7063 19 6 1.4933 0.4469 -4.8537 20 6 2.4099 0.2041 -6.0543 21 6 1.8027 0.8540 -7.2992 22 8 2.6592 0.6277 -8.4206 23 6 2.2622 1.1430 -9.6142 24 6 1.0704 1.8467 -9.7046 25 6 0.6703 2.3737 -10.9174 26 6 1.4536 2.1911 -12.0444 27 9 1.0584 2.7021 -13.2310 28 6 2.6412 1.4847 -11.9566 29 6 3.0459 0.9606 -10.7441 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3632 0.5139 0.8900 33 1 2.2490 -1.6318 1.1526 34 1 3.2487 -2.3962 4.2419 35 1 2.0697 -2.6550 -0.3002 36 1 0.5489 -2.2724 -1.1421 37 1 1.9987 -2.7095 -2.0778 38 1 0.6117 0.3701 -2.3794 39 1 0.5138 0.0110 -5.0504 40 1 1.3874 1.5190 -4.6883 41 1 3.3895 0.6399 -5.8576 42 1 2.5160 -0.8681 -6.2196 43 1 0.8234 0.4177 -7.4957 44 1 1.6965 1.9262 -7.1342 45 1 0.4568 1.9852 -8.8267 46 1 -0.2559 2.9246 -10.9874 47 1 3.2510 1.3426 -12.8365 48 1 3.9720 0.4094 -10.6760 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717421395.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:25 Heat of formation + Delta-G solvation = -114.963631 kcal Electronic energy + Delta-G solvation = -27626.683579 eV Core-core repulsion = 23402.587297 eV Total energy + Delta-G solvation = -4224.096282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81587 -41.16672 -40.87021 -38.57163 -38.22148 -35.58327 -34.78468 -33.50736 -32.22674 -31.16069 -30.33458 -29.78951 -28.08619 -26.15266 -25.12633 -24.27181 -23.35551 -22.43980 -21.28468 -20.62343 -19.48976 -19.27157 -18.47082 -18.06457 -17.44649 -17.41354 -16.80528 -16.64106 -16.53269 -16.18993 -15.86079 -15.68017 -15.49602 -15.19776 -14.91658 -14.60596 -14.54251 -14.42471 -14.02015 -13.88837 -13.57624 -13.49933 -13.14405 -13.06960 -13.00910 -12.95313 -12.79300 -12.63146 -12.42140 -12.17393 -12.12709 -11.98541 -11.71218 -11.65609 -11.57359 -11.48593 -10.94432 -10.84055 -10.17925 -10.03733 -9.10594 -9.02354 -7.93440 -5.22162 0.17087 0.20386 1.48404 1.49847 1.58009 1.73156 1.97520 2.40887 2.57575 2.60280 3.33977 3.40727 3.66141 3.75639 3.82802 3.92318 3.97048 4.00396 4.06066 4.10643 4.13662 4.27744 4.34865 4.40974 4.43991 4.50357 4.62736 4.66484 4.70233 4.75457 4.90159 4.91745 4.99159 5.07733 5.10365 5.13269 5.15713 5.21504 5.22035 5.28724 5.30224 5.51532 5.61585 5.66412 5.72225 6.28831 6.40446 6.66405 7.35257 7.37232 8.10661 8.32809 9.30168 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.035966 B = 0.001402 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.334940 B =19973.431141 C =20169.782421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.047 0.953 4 N -0.735 5.735 5 C -0.238 4.238 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.269 1.269 13 C 0.149 3.851 14 H 0.051 0.949 15 C -0.149 4.149 16 N -0.707 5.707 17 C 0.504 3.496 18 O -0.592 6.592 19 C -0.124 4.124 20 C -0.102 4.102 21 C 0.058 3.942 22 O -0.331 6.331 23 C 0.112 3.888 24 C -0.180 4.180 25 C -0.113 4.113 26 C 0.035 3.965 27 F -0.151 7.151 28 C -0.114 4.114 29 C -0.137 4.137 30 H 0.081 0.919 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.049 0.951 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.129 0.871 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.164 0.836 46 H 0.156 0.844 47 H 0.157 0.843 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.230 9.645 -30.869 33.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.370 4.370 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.213 1.213 11 H -0.226 1.226 12 H -0.194 1.194 13 C 0.043 3.957 14 H 0.070 0.930 15 C -0.208 4.208 16 N -0.361 5.361 17 C 0.292 3.708 18 O -0.473 6.473 19 C -0.163 4.163 20 C -0.140 4.140 21 C -0.016 4.016 22 O -0.245 6.245 23 C 0.066 3.934 24 C -0.199 4.199 25 C -0.132 4.132 26 C 0.015 3.985 27 F -0.130 7.130 28 C -0.132 4.132 29 C -0.156 4.156 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.068 0.932 38 H 0.255 0.745 39 H 0.149 0.851 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.174 0.826 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.332 9.297 -30.781 33.217 hybrid contribution 0.124 0.000 1.141 1.148 sum -8.207 9.297 -29.641 32.130 Atomic orbital electron populations 1.22354 0.96393 1.01599 1.01343 1.20561 0.94020 0.94837 0.85054 0.93503 1.42677 1.78678 1.10534 1.05904 1.19631 1.34931 0.94327 0.88137 0.90365 1.25534 1.02920 0.96866 1.01462 1.69820 1.52629 1.10284 1.29379 0.85167 0.76822 0.78033 0.79893 1.21336 1.22624 1.19436 1.20823 0.97158 0.93026 0.84724 0.93024 1.22022 1.02314 0.95584 1.00840 1.46034 1.26357 1.56487 1.07238 1.21439 0.84250 0.79400 0.85677 1.90721 1.25015 1.45238 1.86316 1.21541 1.01091 1.04280 0.89420 1.21142 0.99356 1.01663 0.91829 1.23009 0.93637 1.01920 0.83042 1.86083 1.49667 1.72989 1.15791 1.19270 0.93890 0.94251 0.85982 1.21407 0.97066 1.01736 0.99682 1.21214 1.00748 1.00273 0.90918 1.17875 0.96891 1.01987 0.81714 1.91471 1.90944 1.85641 1.44966 1.21155 0.95544 0.97453 0.99078 1.20517 1.01662 1.03556 0.89864 0.90007 0.93103 0.94003 0.79061 0.94130 0.93360 0.90709 0.93171 0.74514 0.85061 0.85298 0.92209 0.92015 0.89365 0.89512 0.81874 0.82586 0.82585 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 9.01 71.98 0.65 -3.94 16 2 C 0.16 5.96 2.93 44.99 0.13 6.09 16 3 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 4 N -0.74 -35.81 5.03 -322.94 -1.63 -37.44 16 5 C -0.24 -12.89 9.93 84.03 0.83 -12.05 16 6 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 7 C -0.08 -4.29 5.50 84.86 0.47 -3.82 16 8 N -0.97 -59.14 13.06 21.65 0.28 -58.85 16 9 Si 0.97 45.61 29.55 68.60 2.03 47.64 16 10 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 13 C 0.15 4.88 2.62 44.99 0.12 5.00 16 14 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 15 C -0.15 -4.92 9.00 71.98 0.65 -4.27 16 16 N -0.71 -16.05 4.99 -442.54 -2.21 -18.26 16 17 C 0.50 11.90 7.79 87.66 0.68 12.58 16 18 O -0.59 -20.61 15.64 -3.04 -0.05 -20.66 16 19 C -0.12 -1.41 5.70 29.85 0.17 -1.24 16 20 C -0.10 -1.55 4.87 30.59 0.15 -1.40 16 21 C 0.06 0.59 4.74 71.98 0.34 0.93 16 22 O -0.33 -5.45 10.14 -92.89 -0.94 -6.39 16 23 C 0.11 1.63 6.69 22.49 0.15 1.78 16 24 C -0.18 -1.93 9.04 22.36 0.20 -1.72 16 25 C -0.11 -1.28 10.02 22.30 0.22 -1.06 16 26 C 0.03 0.50 7.30 22.37 0.16 0.66 16 27 F -0.15 -2.50 17.27 44.97 0.78 -1.73 16 28 C -0.11 -1.46 10.02 22.30 0.22 -1.24 16 29 C -0.14 -1.91 9.99 22.36 0.22 -1.69 16 30 H 0.08 1.57 6.29 -2.39 -0.02 1.56 16 31 H 0.05 1.53 6.57 -2.39 -0.02 1.51 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.38 19.81 5.77 -92.71 -0.54 19.27 16 34 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.05 1.87 6.29 -2.38 -0.01 1.85 16 36 H 0.07 2.15 6.57 -2.39 -0.02 2.13 16 37 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.42 6.31 6.58 -92.71 -0.61 5.70 16 39 H 0.13 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.06 1.19 8.10 -2.38 -0.02 1.17 16 42 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 43 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 44 H 0.09 0.52 7.68 -2.39 -0.02 0.50 16 45 H 0.16 0.82 6.30 -2.91 -0.02 0.80 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.15 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -75.39 396.56 3.48 -71.91 By element: Atomic # 1 Polarization: 29.33 SS G_CDS: -0.16 Total: 29.17 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 5.38 Total: -5.39 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -3.55 Total: -114.55 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.99 Total: -27.05 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 45.61 SS G_CDS: 2.03 Total: 47.64 kcal Total: -75.39 3.48 -71.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421395.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.052 kcal (2) G-P(sol) polarization free energy of solvation -75.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds