Wall clock time and date at job start Tue Mar 31 2020 20:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46692 * 2 1 4 4 N 1.46500 * 109.47133 * 119.99629 * 2 1 3 5 5 C 1.34779 * 120.00165 * 275.00058 * 4 2 1 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.46861 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46969 * 179.97438 * 8 7 5 10 10 O 1.42905 * 109.47079 * 179.97438 * 9 8 7 11 11 C 1.35950 * 116.99802 * 180.02562 * 10 9 8 12 12 C 1.38708 * 120.03026 * 359.72477 * 11 10 9 13 13 C 1.38148 * 119.96893 * 179.78884 * 12 11 10 14 14 C 1.38453 * 120.02995 * 0.48957 * 13 12 11 15 15 F 1.35097 * 119.97318 * 179.72219 * 14 13 12 16 16 C 1.38459 * 120.05793 * 359.74257 * 14 13 12 17 17 C 1.38144 * 120.03434 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47344 * 239.99829 * 2 1 3 19 19 H 1.08994 * 109.47080 * 300.00068 * 18 2 1 20 20 C 1.53005 * 109.47007 * 179.97438 * 18 2 1 21 21 N 1.46500 * 109.47169 * 59.99822 * 18 2 1 22 22 C 1.36940 * 120.00330 * 204.99864 * 21 18 2 23 23 H 1.07997 * 119.99431 * 0.02562 * 22 21 18 24 24 C 1.38802 * 120.00095 * 179.97438 * 22 21 18 25 25 N 1.31622 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47189 * 90.00281 * 26 24 22 28 28 H 1.48503 * 109.47255 * 210.00325 * 26 24 22 29 29 H 1.48491 * 109.47302 * 330.00525 * 26 24 22 30 30 H 1.08993 * 109.47512 * 300.00038 * 1 2 3 31 31 H 1.09001 * 109.47331 * 60.00393 * 1 2 3 32 32 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99985 * 95.00633 * 4 2 1 34 34 H 1.08996 * 109.47258 * 59.99959 * 7 5 4 35 35 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 36 36 H 1.09004 * 109.47298 * 60.00075 * 8 7 5 37 37 H 1.09004 * 109.47552 * 299.99947 * 8 7 5 38 38 H 1.09004 * 109.46930 * 59.99996 * 9 8 7 39 39 H 1.09000 * 109.47312 * 299.99939 * 9 8 7 40 40 H 1.08003 * 120.01532 * 0.02562 * 12 11 10 41 41 H 1.08004 * 119.98636 * 180.21131 * 13 12 11 42 42 H 1.08006 * 119.98069 * 180.02562 * 16 14 13 43 43 H 1.08001 * 120.02084 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.46860 * 60.00553 * 20 18 2 45 45 H 1.09002 * 109.46986 * 180.02562 * 20 18 2 46 46 H 1.08999 * 109.47117 * 299.99735 * 20 18 2 47 47 H 0.97003 * 119.99532 * 25.00352 * 21 18 2 48 48 H 0.97001 * 119.99731 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 6 2.6998 0.2544 4.7590 9 6 3.2086 -0.4670 6.0086 10 8 3.2568 0.4513 7.1025 11 6 3.6909 -0.0330 8.2963 12 6 4.0572 -1.3658 8.4129 13 6 4.5023 -1.8556 9.6255 14 6 4.5734 -1.0193 10.7266 15 9 5.0036 -1.5008 11.9133 16 6 4.2035 0.3102 10.6127 17 6 3.7626 0.8038 9.4002 18 6 2.0400 -0.7213 -1.2492 19 1 1.6767 -1.7489 -1.2492 20 6 3.5701 -0.7207 -1.2494 21 7 1.5517 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6250 23 1 1.6775 -1.7618 -3.6733 24 6 0.9578 -0.0597 -4.7582 25 7 0.6446 1.2174 -4.6992 26 14 0.7801 -0.9915 -6.3675 27 1 -0.5817 -1.5776 -6.4524 28 1 0.9899 -0.0598 -7.5047 29 1 1.7909 -2.0778 -6.4247 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1527 34 1 3.6479 -1.1212 3.3987 35 1 1.9759 -1.5504 3.8327 36 1 1.7004 0.6466 4.9480 37 1 3.3724 1.0766 4.5145 38 1 4.2079 -0.8596 5.8199 39 1 2.5356 -1.2889 6.2531 40 1 3.9980 -2.0194 7.5551 41 1 4.7908 -2.8925 9.7157 42 1 4.2598 0.9616 11.4724 43 1 3.4737 1.8407 9.3117 44 1 3.9337 -1.2343 -0.3595 45 1 3.9334 -1.2341 -2.1396 46 1 3.9330 0.3071 -1.2497 47 1 1.3210 0.9105 -2.4018 48 1 0.3213 1.6745 -5.4912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717421397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:35 Heat of formation + Delta-G solvation = -98.409560 kcal Electronic energy + Delta-G solvation = -27620.378386 eV Core-core repulsion = 23396.999942 eV Total energy + Delta-G solvation = -4223.378444 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.22487 -40.57761 -39.78683 -37.80819 -36.84227 -34.09575 -33.93747 -31.82924 -31.69990 -30.07837 -29.50608 -28.44162 -27.34017 -24.10675 -23.99821 -23.10061 -22.50628 -21.67548 -20.26169 -19.93342 -18.75970 -17.84699 -17.44526 -17.23589 -16.83694 -16.69417 -15.95741 -15.64457 -15.36516 -15.16988 -14.75144 -14.62431 -14.13097 -14.01911 -13.71720 -13.68231 -13.48020 -13.31661 -13.09285 -12.95476 -12.60586 -12.52391 -12.37505 -11.89347 -11.81860 -11.72703 -11.56277 -11.21715 -11.20308 -10.98557 -10.94512 -10.85355 -10.71933 -10.24358 -9.93818 -9.84292 -9.69658 -9.63071 -9.04682 -8.78613 -8.56198 -7.02316 -5.80725 -3.10576 0.65314 0.74232 2.59821 2.72455 3.08605 3.34604 3.40486 3.46258 3.47538 3.85363 4.16567 4.27009 4.45974 4.49571 4.56574 4.59661 4.64158 4.78106 4.90045 4.96586 5.01396 5.14765 5.23499 5.34413 5.38190 5.46442 5.62110 5.64757 5.66260 5.71109 5.73032 5.74395 5.86789 5.93650 6.07117 6.19484 6.22723 6.35730 6.39241 6.49139 6.59368 6.78042 6.90905 6.92307 6.99443 7.65041 7.65498 8.34212 8.37488 9.48264 10.03529 10.38429 11.41583 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042931 B = 0.001396 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.051661 B =20058.689884 C =20386.980354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.084 0.916 4 N -0.718 5.718 5 C 0.511 3.489 6 O -0.541 6.541 7 C -0.138 4.138 8 C -0.104 4.104 9 C 0.058 3.942 10 O -0.308 6.308 11 C 0.126 3.874 12 C -0.183 4.183 13 C -0.112 4.112 14 C 0.054 3.946 15 F -0.142 7.142 16 C -0.112 4.112 17 C -0.125 4.125 18 C 0.169 3.831 19 H 0.050 0.950 20 C -0.164 4.164 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.046 0.954 31 H 0.080 0.920 32 H 0.050 0.950 33 H 0.397 0.603 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.142 0.858 43 H 0.142 0.858 44 H 0.035 0.965 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.385 0.615 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.347 -7.074 29.643 31.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.103 0.897 4 N -0.369 5.369 5 C 0.296 3.704 6 O -0.418 6.418 7 C -0.178 4.178 8 C -0.142 4.142 9 C -0.017 4.017 10 O -0.222 6.222 11 C 0.080 3.920 12 C -0.201 4.201 13 C -0.131 4.131 14 C 0.035 3.965 15 F -0.121 7.121 16 C -0.131 4.131 17 C -0.144 4.144 18 C 0.058 3.942 19 H 0.068 0.932 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.069 0.931 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.157 0.843 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.160 0.840 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.220 0.780 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 7.068 -6.154 29.484 30.937 hybrid contribution 0.119 -1.051 -0.850 1.357 sum 7.187 -7.206 28.633 30.388 Atomic orbital electron populations 1.22045 0.94967 1.01700 1.02338 1.21341 0.94416 0.97596 0.83624 0.89744 1.46094 1.66935 1.13905 1.09920 1.20413 0.77995 0.87436 0.84519 1.90728 1.50015 1.16037 1.84980 1.21525 1.03514 0.99498 0.93285 1.21229 1.04152 0.98440 0.90372 1.22929 1.01265 0.92157 0.85340 1.86119 1.80534 1.39126 1.16378 1.19061 0.94623 0.92122 0.86181 1.21164 1.05134 0.94958 0.98894 1.20956 1.00212 1.00368 0.91540 1.17593 1.04011 0.93098 0.81790 1.91494 1.87771 1.88527 1.44323 1.20981 0.99642 0.93980 0.98515 1.20337 1.03383 1.00664 0.89971 1.20392 0.92087 0.95547 0.86188 0.93218 1.22448 0.99093 1.01093 0.99778 1.42293 1.78204 1.10690 1.04831 1.19187 1.36957 0.93866 0.87145 0.91162 1.24737 1.01981 0.95952 0.98051 1.69664 1.50549 1.08618 1.28986 0.86201 0.77755 0.78578 0.83679 1.21720 1.21774 1.20809 0.93483 0.90135 0.93132 0.76905 0.88642 0.88684 0.89811 0.89770 0.91658 0.91676 0.84328 0.84445 0.84027 0.83974 0.94618 0.92669 0.93433 0.78046 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.33 37.16 0.35 -2.22 16 2 C 0.13 2.21 2.21 -67.93 -0.15 2.06 16 3 H 0.08 1.59 7.58 -51.93 -0.39 1.20 16 4 N -0.72 -8.86 4.38 -53.81 -0.24 -9.10 16 5 C 0.51 6.40 7.79 -10.99 -0.09 6.32 16 6 O -0.54 -9.22 15.64 5.56 0.09 -9.13 16 7 C -0.14 -1.03 5.70 -27.89 -0.16 -1.19 16 8 C -0.10 -0.87 4.87 -26.73 -0.13 -1.01 16 9 C 0.06 0.38 4.74 37.16 0.18 0.56 16 10 O -0.31 -2.74 10.14 -19.58 -0.20 -2.94 16 11 C 0.13 1.01 6.69 -39.23 -0.26 0.75 16 12 C -0.18 -1.22 9.04 -39.44 -0.36 -1.57 16 13 C -0.11 -0.75 10.02 -39.54 -0.40 -1.15 16 14 C 0.05 0.42 7.30 -39.42 -0.29 0.13 16 15 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 16 C -0.11 -0.76 10.02 -39.53 -0.40 -1.16 16 17 C -0.12 -0.91 9.98 -39.44 -0.39 -1.30 16 18 C 0.17 3.10 2.52 -67.93 -0.17 2.93 16 19 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 20 C -0.16 -2.78 9.33 37.16 0.35 -2.43 16 21 N -0.72 -17.12 4.43 -53.43 -0.24 -17.36 16 22 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 23 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 24 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.52 13.06 55.49 0.72 -26.79 16 26 Si 0.91 21.86 29.55 -169.99 -5.02 16.84 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 29 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.57 7.45 -51.93 -0.39 1.18 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.40 3.74 8.39 -40.82 -0.34 3.40 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.07 0.33 7.67 -51.93 -0.40 -0.07 16 39 H 0.07 0.33 7.65 -51.93 -0.40 -0.07 16 40 H 0.14 0.64 6.30 -52.48 -0.33 0.31 16 41 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 42 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 43 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 44 H 0.03 0.48 7.45 -51.93 -0.39 0.09 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.39 9.96 7.58 -40.82 -0.31 9.65 16 48 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 404.26 15.07 6.09 6.09 Total: -1.00 -32.60 404.26 -8.47 -41.07 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -7.56 Total: 8.74 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -2.16 Total: -6.23 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.25 Total: -53.25 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: -0.11 Total: -12.07 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.60 -8.47 -41.07 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.339 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds