Wall clock time and date at job start Tue Mar 31 2020 20:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 109.46692 * 2 1 4 4 N 1.46500 * 109.47133 * 119.99629 * 2 1 3 5 5 C 1.34779 * 120.00165 * 275.00058 * 4 2 1 6 6 O 1.21282 * 119.99927 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00033 * 179.97438 * 5 4 2 8 8 C 1.52996 * 109.46861 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.46969 * 179.97438 * 8 7 5 10 10 O 1.42905 * 109.47079 * 179.97438 * 9 8 7 11 11 C 1.35950 * 116.99802 * 180.02562 * 10 9 8 12 12 C 1.38708 * 120.03026 * 359.72477 * 11 10 9 13 13 C 1.38148 * 119.96893 * 179.78884 * 12 11 10 14 14 C 1.38453 * 120.02995 * 0.48957 * 13 12 11 15 15 F 1.35097 * 119.97318 * 179.72219 * 14 13 12 16 16 C 1.38459 * 120.05793 * 359.74257 * 14 13 12 17 17 C 1.38144 * 120.03434 * 0.02562 * 16 14 13 18 18 C 1.52998 * 109.47344 * 239.99829 * 2 1 3 19 19 H 1.08994 * 109.47080 * 300.00068 * 18 2 1 20 20 C 1.53005 * 109.47007 * 179.97438 * 18 2 1 21 21 N 1.46500 * 109.47169 * 59.99822 * 18 2 1 22 22 C 1.36940 * 120.00330 * 204.99864 * 21 18 2 23 23 H 1.07997 * 119.99431 * 0.02562 * 22 21 18 24 24 C 1.38802 * 120.00095 * 179.97438 * 22 21 18 25 25 N 1.31622 * 120.00217 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99875 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47189 * 90.00281 * 26 24 22 28 28 H 1.48503 * 109.47255 * 210.00325 * 26 24 22 29 29 H 1.48491 * 109.47302 * 330.00525 * 26 24 22 30 30 H 1.08993 * 109.47512 * 300.00038 * 1 2 3 31 31 H 1.09001 * 109.47331 * 60.00393 * 1 2 3 32 32 H 1.09005 * 109.46692 * 179.97438 * 1 2 3 33 33 H 0.96996 * 119.99985 * 95.00633 * 4 2 1 34 34 H 1.08996 * 109.47258 * 59.99959 * 7 5 4 35 35 H 1.09000 * 109.47247 * 300.00119 * 7 5 4 36 36 H 1.09004 * 109.47298 * 60.00075 * 8 7 5 37 37 H 1.09004 * 109.47552 * 299.99947 * 8 7 5 38 38 H 1.09004 * 109.46930 * 59.99996 * 9 8 7 39 39 H 1.09000 * 109.47312 * 299.99939 * 9 8 7 40 40 H 1.08003 * 120.01532 * 0.02562 * 12 11 10 41 41 H 1.08004 * 119.98636 * 180.21131 * 13 12 11 42 42 H 1.08006 * 119.98069 * 180.02562 * 16 14 13 43 43 H 1.08001 * 120.02084 * 179.97438 * 17 16 14 44 44 H 1.08998 * 109.46860 * 60.00553 * 20 18 2 45 45 H 1.09002 * 109.46986 * 180.02562 * 20 18 2 46 46 H 1.08999 * 109.47117 * 299.99735 * 20 18 2 47 47 H 0.97003 * 119.99532 * 25.00352 * 21 18 2 48 48 H 0.97001 * 119.99731 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1470 -0.0181 2.3572 6 8 1.8581 1.1585 2.4117 7 6 2.6488 -0.7286 3.5878 8 6 2.6998 0.2544 4.7590 9 6 3.2086 -0.4670 6.0086 10 8 3.2568 0.4513 7.1025 11 6 3.6909 -0.0330 8.2963 12 6 4.0572 -1.3658 8.4129 13 6 4.5023 -1.8556 9.6255 14 6 4.5734 -1.0193 10.7266 15 9 5.0036 -1.5008 11.9133 16 6 4.2035 0.3102 10.6127 17 6 3.7626 0.8038 9.4002 18 6 2.0400 -0.7213 -1.2492 19 1 1.6767 -1.7489 -1.2492 20 6 3.5701 -0.7207 -1.2494 21 7 1.5517 -0.0307 -2.4454 22 6 1.4209 -0.7139 -3.6250 23 1 1.6775 -1.7618 -3.6733 24 6 0.9578 -0.0597 -4.7582 25 7 0.6446 1.2174 -4.6992 26 14 0.7801 -0.9915 -6.3675 27 1 -0.5817 -1.5776 -6.4524 28 1 0.9899 -0.0598 -7.5047 29 1 1.7909 -2.0778 -6.4247 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2491 -1.6316 1.1527 34 1 3.6479 -1.1212 3.3987 35 1 1.9759 -1.5504 3.8327 36 1 1.7004 0.6466 4.9480 37 1 3.3724 1.0766 4.5145 38 1 4.2079 -0.8596 5.8199 39 1 2.5356 -1.2889 6.2531 40 1 3.9980 -2.0194 7.5551 41 1 4.7908 -2.8925 9.7157 42 1 4.2598 0.9616 11.4724 43 1 3.4737 1.8407 9.3117 44 1 3.9337 -1.2343 -0.3595 45 1 3.9334 -1.2341 -2.1396 46 1 3.9330 0.3071 -1.2497 47 1 1.3210 0.9105 -2.4018 48 1 0.3213 1.6745 -5.4912 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717421397.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:34 Heat of formation + Delta-G solvation = -118.722812 kcal Electronic energy + Delta-G solvation = -27621.259235 eV Core-core repulsion = 23396.999942 eV Total energy + Delta-G solvation = -4224.259293 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.81693 -41.15360 -40.83124 -38.46371 -38.15928 -35.57532 -34.77585 -33.48852 -32.22779 -31.20402 -30.32462 -30.12392 -28.03993 -25.90478 -24.83634 -24.05591 -23.29304 -22.38355 -21.50702 -21.11900 -19.40160 -19.24494 -18.45311 -18.03455 -17.43828 -17.40956 -16.95415 -16.58173 -16.50143 -16.16620 -15.71116 -15.50695 -15.28112 -15.14698 -14.90300 -14.63701 -14.51309 -14.38100 -14.06381 -14.01058 -13.59088 -13.44040 -13.27674 -13.11463 -12.95326 -12.91067 -12.70070 -12.56177 -12.42252 -12.24734 -12.16236 -12.13196 -11.72134 -11.71027 -11.48730 -11.43735 -10.97423 -10.82543 -10.17913 -10.02888 -9.10522 -9.00054 -7.91257 -5.20168 0.17143 0.20427 1.49726 1.50867 1.59016 1.75039 1.97787 2.40814 2.57627 2.62173 3.34034 3.43245 3.66286 3.74939 3.82588 3.85704 3.97641 4.03615 4.07817 4.13847 4.23218 4.28378 4.37133 4.42109 4.44220 4.51343 4.61174 4.66815 4.72770 4.83406 4.90789 4.91780 4.99209 5.07742 5.10873 5.13316 5.15759 5.21287 5.23013 5.30461 5.33050 5.53136 5.54490 5.64908 5.72292 6.29684 6.40540 6.68600 7.35897 7.39180 8.10272 8.32822 9.32320 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.042931 B = 0.001396 C = 0.001373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.051661 B =20058.689884 C =20386.980354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.150 3.850 3 H 0.054 0.946 4 N -0.705 5.705 5 C 0.506 3.494 6 O -0.593 6.593 7 C -0.124 4.124 8 C -0.102 4.102 9 C 0.058 3.942 10 O -0.331 6.331 11 C 0.112 3.888 12 C -0.180 4.180 13 C -0.113 4.113 14 C 0.034 3.966 15 F -0.151 7.151 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.167 3.833 19 H 0.063 0.937 20 C -0.154 4.154 21 N -0.732 5.732 22 C -0.233 4.233 23 H 0.082 0.918 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.971 3.029 27 H -0.288 1.288 28 H -0.301 1.301 29 H -0.267 1.267 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.065 0.935 33 H 0.417 0.583 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.157 0.843 43 H 0.147 0.853 44 H 0.078 0.922 45 H 0.041 0.959 46 H 0.029 0.971 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.424 -10.385 30.910 33.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.043 3.957 3 H 0.072 0.928 4 N -0.358 5.358 5 C 0.294 3.706 6 O -0.473 6.473 7 C -0.163 4.163 8 C -0.140 4.140 9 C -0.016 4.016 10 O -0.245 6.245 11 C 0.066 3.934 12 C -0.199 4.199 13 C -0.132 4.132 14 C 0.015 3.985 15 F -0.130 7.130 16 C -0.132 4.132 17 C -0.156 4.156 18 C 0.058 3.942 19 H 0.081 0.919 20 C -0.214 4.214 21 N -0.372 5.372 22 C -0.365 4.365 23 H 0.100 0.900 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.800 3.200 27 H -0.216 1.216 28 H -0.228 1.228 29 H -0.192 1.192 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.084 0.916 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.165 0.835 44 H 0.097 0.903 45 H 0.060 0.940 46 H 0.048 0.952 47 H 0.202 0.798 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.183 -9.550 30.798 33.266 hybrid contribution -0.198 -0.017 -1.137 1.154 sum 7.984 -9.567 29.661 32.172 Atomic orbital electron populations 1.21923 0.95431 1.02099 1.00699 1.20837 0.93888 0.96250 0.84675 0.92780 1.45865 1.66625 1.14685 1.08604 1.21387 0.76692 0.86946 0.85569 1.90721 1.52142 1.18668 1.85769 1.21535 1.05894 0.99219 0.89662 1.21145 1.02380 0.98427 0.92035 1.23012 1.02936 0.91863 0.83805 1.86085 1.80883 1.40445 1.17116 1.19273 0.95162 0.92959 0.86001 1.21407 1.04259 0.94609 0.99613 1.21215 0.99585 1.01185 0.91177 1.17875 1.04893 0.93764 0.81937 1.91469 1.88001 1.88653 1.44898 1.21155 0.99102 0.94064 0.98909 1.20516 1.03716 1.01154 0.90208 1.20595 0.93004 0.95637 0.84974 0.91906 1.22299 0.97443 1.00426 1.01217 1.42500 1.78478 1.10204 1.06034 1.19612 1.34628 0.94297 0.87938 0.90049 1.25527 1.03120 0.96777 1.01436 1.69834 1.52734 1.10327 1.29323 0.85177 0.77862 0.77415 0.79517 1.21571 1.22814 1.19207 0.93481 0.93404 0.91578 0.74562 0.85244 0.85174 0.92086 0.92163 0.89497 0.89427 0.81881 0.82591 0.82584 0.83478 0.90326 0.93979 0.95174 0.79790 0.94247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.83 9.33 71.98 0.67 -4.16 16 2 C 0.15 4.82 2.21 44.99 0.10 4.92 16 3 H 0.05 2.10 7.58 -2.38 -0.02 2.09 16 4 N -0.71 -15.57 4.38 -442.53 -1.94 -17.51 16 5 C 0.51 11.67 7.79 87.66 0.68 12.36 16 6 O -0.59 -20.33 15.64 -3.04 -0.05 -20.38 16 7 C -0.12 -1.37 5.70 29.85 0.17 -1.20 16 8 C -0.10 -1.53 4.87 30.59 0.15 -1.38 16 9 C 0.06 0.58 4.74 71.98 0.34 0.93 16 10 O -0.33 -5.43 10.14 -92.99 -0.94 -6.37 16 11 C 0.11 1.63 6.69 22.49 0.15 1.78 16 12 C -0.18 -1.92 9.04 22.36 0.20 -1.72 16 13 C -0.11 -1.28 10.02 22.30 0.22 -1.06 16 14 C 0.03 0.50 7.30 22.37 0.16 0.66 16 15 F -0.15 -2.50 17.27 44.97 0.78 -1.73 16 16 C -0.11 -1.46 10.02 22.30 0.22 -1.23 16 17 C -0.14 -1.91 9.98 22.36 0.22 -1.68 16 18 C 0.17 5.93 2.52 44.99 0.11 6.04 16 19 H 0.06 2.10 8.08 -2.39 -0.02 2.08 16 20 C -0.15 -4.93 9.33 71.98 0.67 -4.25 16 21 N -0.73 -35.19 4.43 -322.95 -1.43 -36.62 16 22 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 23 H 0.08 4.05 7.83 -2.91 -0.02 4.03 16 24 C -0.08 -4.29 5.50 84.86 0.47 -3.83 16 25 N -0.97 -59.10 13.06 21.65 0.28 -58.82 16 26 Si 0.97 45.16 29.55 68.60 2.03 47.19 16 27 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 28 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.92 7.45 -2.39 -0.02 1.90 16 32 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 33 H 0.42 6.00 8.39 -92.71 -0.78 5.23 16 34 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.13 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.06 1.18 8.10 -2.38 -0.02 1.17 16 37 H 0.06 1.18 8.10 -2.39 -0.02 1.17 16 38 H 0.09 0.51 7.67 -2.38 -0.02 0.49 16 39 H 0.09 0.50 7.65 -2.39 -0.02 0.48 16 40 H 0.16 0.82 6.30 -2.91 -0.02 0.80 16 41 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.16 1.38 8.06 -2.91 -0.02 1.35 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.08 1.82 7.45 -2.39 -0.02 1.80 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.37 19.86 7.58 -92.71 -0.70 19.16 16 48 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -74.43 404.26 3.61 -70.82 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.51 Total: 28.73 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.39 Total: -5.32 kcal Atomic # 7 Polarization: -109.86 SS G_CDS: -3.09 Total: -112.95 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -0.99 Total: -26.75 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -74.43 3.61 -70.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421397.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.898 kcal (2) G-P(sol) polarization free energy of solvation -74.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds