Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.53001 * 109.46887 * 64.99956 * 13 2 1 16 16 N 1.46499 * 109.47047 * 305.00007 * 13 2 1 17 17 C 1.34781 * 119.99668 * 204.99720 * 16 13 2 18 18 O 1.21281 * 120.00031 * 0.02562 * 17 16 13 19 19 C 1.50699 * 119.99854 * 180.02562 * 17 16 13 20 20 C 1.53000 * 109.47037 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46827 * 180.02562 * 20 19 17 22 22 O 1.42906 * 109.46811 * 179.97438 * 21 20 19 23 23 C 1.35943 * 116.99884 * 179.97438 * 22 21 20 24 24 C 1.38713 * 120.03092 * 359.72877 * 23 22 21 25 25 C 1.38149 * 119.96855 * 179.78813 * 24 23 22 26 26 C 1.38462 * 120.03194 * 0.48739 * 25 24 23 27 27 F 1.35099 * 119.97079 * 179.72437 * 26 25 24 28 28 C 1.38454 * 120.05855 * 359.74191 * 26 25 24 29 29 C 1.38156 * 120.02763 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 34 34 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47269 * 299.99642 * 15 13 2 36 36 H 1.09003 * 109.46997 * 60.00245 * 15 13 2 37 37 H 1.09000 * 109.46522 * 179.97438 * 15 13 2 38 38 H 0.96996 * 119.99988 * 25.00363 * 16 13 2 39 39 H 1.09002 * 109.47189 * 300.00297 * 19 17 16 40 40 H 1.08996 * 109.47198 * 60.00304 * 19 17 16 41 41 H 1.09002 * 109.46938 * 299.99917 * 20 19 17 42 42 H 1.08996 * 109.47313 * 59.99842 * 20 19 17 43 43 H 1.08993 * 109.47178 * 299.99617 * 21 20 19 44 44 H 1.08996 * 109.47348 * 59.99808 * 21 20 19 45 45 H 1.07999 * 120.01593 * 359.97438 * 24 23 22 46 46 H 1.08001 * 119.98637 * 180.20491 * 25 24 23 47 47 H 1.07993 * 119.98833 * 180.02562 * 28 26 25 48 48 H 1.08001 * 120.00712 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0913 -0.1939 3.6276 18 8 3.1468 -0.7860 3.7062 19 6 1.4901 0.4409 4.8550 20 6 2.4045 0.1939 6.0567 21 6 1.7938 0.8379 7.3030 22 8 2.6475 0.6067 8.4254 23 6 2.2479 1.1173 9.6202 24 6 1.0615 1.8308 9.7084 25 6 0.6545 2.3453 10.9242 26 6 1.4350 2.1579 12.0523 27 9 1.0385 2.6665 13.2395 28 6 2.6218 1.4501 11.9648 29 6 3.0288 0.9303 10.7512 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.2335 -2.3998 -4.2459 35 1 0.5489 -2.2724 1.1421 36 1 2.0699 -2.6550 0.3002 37 1 1.9989 -2.7094 2.0777 38 1 0.6118 0.3700 2.3794 39 1 1.3837 1.5137 4.6942 40 1 0.5105 0.0035 5.0475 41 1 2.5112 -0.8788 6.2176 42 1 3.3839 0.6316 5.8639 43 1 1.6867 1.9106 7.1423 44 1 0.8145 0.3999 7.4955 45 1 0.4549 1.9813 8.8277 46 1 -0.2708 2.8980 10.9938 47 1 3.2295 1.3043 12.8455 48 1 3.9548 0.3786 10.6832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717421398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -94.069319 kcal Electronic energy + Delta-G solvation = -27625.549224 eV Core-core repulsion = 23402.358987 eV Total energy + Delta-G solvation = -4223.190237 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.22373 -40.57784 -39.81524 -37.81668 -37.01601 -34.09119 -33.92259 -31.86244 -31.70711 -30.02830 -29.40312 -28.24227 -27.38444 -24.50407 -24.04749 -23.25901 -22.65799 -21.76630 -20.28701 -19.23852 -18.75137 -17.86652 -17.52928 -17.22171 -16.83845 -16.70985 -15.95704 -15.59548 -15.36102 -15.15620 -14.77025 -14.66675 -14.28860 -14.13051 -13.96172 -13.67049 -13.54162 -13.39973 -13.05350 -12.84069 -12.68331 -12.40548 -12.37184 -11.97345 -11.84862 -11.67178 -11.57556 -11.32460 -11.21387 -10.97535 -10.94433 -10.86527 -10.50464 -10.27107 -9.99406 -9.83533 -9.69552 -9.62642 -8.97948 -8.83122 -8.56124 -7.03637 -5.81645 -3.11293 0.65350 0.74307 2.59935 2.72182 3.08656 3.35266 3.40743 3.46556 3.48363 3.85413 4.16649 4.27108 4.46303 4.49668 4.56145 4.59659 4.64195 4.78173 4.90126 4.96481 5.01715 5.14863 5.25318 5.35778 5.38375 5.44934 5.59762 5.61753 5.62196 5.66330 5.72703 5.73118 5.79808 5.93794 6.03660 6.12109 6.22695 6.25872 6.36480 6.44260 6.59845 6.68183 6.89007 6.91055 7.03656 7.65084 7.66060 8.34155 8.37556 9.48251 10.03558 10.38192 11.40999 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.001401 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.140970 B =19982.745057 C =20184.455970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.291 1.291 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.720 5.720 17 C 0.510 3.490 18 O -0.540 6.540 19 C -0.138 4.138 20 C -0.104 4.104 21 C 0.058 3.942 22 O -0.308 6.308 23 C 0.126 3.874 24 C -0.183 4.183 25 C -0.112 4.112 26 C 0.054 3.946 27 F -0.142 7.142 28 C -0.112 4.112 29 C -0.125 4.125 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.398 0.602 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.142 0.858 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 7.569 29.673 31.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.373 4.373 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.031 3.969 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.017 4.017 22 O -0.222 6.222 23 C 0.080 3.920 24 C -0.201 4.201 25 C -0.131 4.131 26 C 0.035 3.965 27 F -0.121 7.121 28 C -0.131 4.131 29 C -0.144 4.144 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.233 0.767 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.157 0.843 46 H 0.156 0.844 47 H 0.160 0.840 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.788 7.164 29.541 30.943 hybrid contribution -0.675 0.608 -0.868 1.256 sum -6.463 7.772 28.673 30.403 Atomic orbital electron populations 1.22537 0.99364 1.01244 0.99700 1.20362 0.92138 0.95580 0.86230 0.93105 1.42463 1.78218 1.10874 1.04766 1.19270 1.37001 0.93968 0.87012 0.91069 1.24746 1.01948 0.95980 0.98100 1.69669 1.50774 1.08631 1.28837 0.86116 0.77350 0.78750 0.83932 1.20565 1.21829 1.21860 1.21328 0.99031 0.92855 0.83724 0.89444 1.22135 1.01436 0.95864 1.02278 1.46269 1.25786 1.56700 1.08495 1.20446 0.85068 0.80354 0.84615 1.90728 1.22545 1.42869 1.85588 1.21529 1.00514 1.02695 0.93106 1.21228 0.99854 1.03037 0.90076 1.22926 0.93467 1.00680 0.84617 1.86118 1.48568 1.72583 1.14884 1.19058 0.93115 0.93646 0.86163 1.21165 0.97585 1.02572 0.98827 1.20958 1.00250 1.00621 0.91246 1.17595 0.96117 1.01242 0.81541 1.91495 1.90774 1.85495 1.44353 1.20981 0.95556 0.97941 0.98638 1.20338 1.01184 1.03221 0.89619 0.92820 0.94902 0.92404 0.77773 0.93464 0.92578 0.90533 0.93140 0.76681 0.88635 0.88686 0.89806 0.89753 0.91647 0.91679 0.84327 0.84445 0.84028 0.83976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.01 37.16 0.33 -2.35 16 2 C 0.17 3.12 2.93 -67.93 -0.20 2.92 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -17.30 5.03 -53.43 -0.27 -17.57 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 7 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.64 13.06 55.49 0.72 -26.91 16 9 Si 0.91 22.01 29.55 -169.99 -5.02 16.98 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 11 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 12 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 13 C 0.14 2.24 2.62 -67.93 -0.18 2.06 16 14 H 0.09 1.69 7.58 -51.93 -0.39 1.30 16 15 C -0.16 -2.61 9.00 37.16 0.33 -2.28 16 16 N -0.72 -9.04 4.99 -53.80 -0.27 -9.31 16 17 C 0.51 6.47 7.79 -10.98 -0.09 6.38 16 18 O -0.54 -9.28 15.64 5.56 0.09 -9.20 16 19 C -0.14 -1.05 5.70 -27.88 -0.16 -1.20 16 20 C -0.10 -0.88 4.87 -26.73 -0.13 -1.01 16 21 C 0.06 0.38 4.74 37.16 0.18 0.56 16 22 O -0.31 -2.75 10.14 -19.56 -0.20 -2.95 16 23 C 0.13 1.02 6.69 -39.23 -0.26 0.75 16 24 C -0.18 -1.22 9.04 -39.44 -0.36 -1.58 16 25 C -0.11 -0.75 10.02 -39.53 -0.40 -1.15 16 26 C 0.05 0.42 7.30 -39.42 -0.29 0.13 16 27 F -0.14 -1.23 17.27 2.25 0.04 -1.19 16 28 C -0.11 -0.77 10.02 -39.53 -0.40 -1.16 16 29 C -0.12 -0.91 9.98 -39.44 -0.39 -1.30 16 30 H 0.05 0.87 6.56 -51.93 -0.34 0.53 16 31 H 0.03 0.39 6.29 -51.93 -0.33 0.06 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 33 H 0.39 9.86 5.77 -40.82 -0.24 9.62 16 34 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 35 H 0.06 0.85 6.56 -51.93 -0.34 0.51 16 36 H 0.08 1.42 6.29 -51.93 -0.33 1.10 16 37 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.40 3.90 6.58 -40.82 -0.27 3.63 16 39 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 42 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 43 H 0.07 0.33 7.65 -51.93 -0.40 -0.06 16 44 H 0.06 0.33 7.67 -51.93 -0.40 -0.07 16 45 H 0.14 0.64 6.30 -52.49 -0.33 0.31 16 46 H 0.14 0.67 8.06 -52.49 -0.42 0.24 16 47 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 48 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -32.92 396.55 -8.30 -41.22 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: -7.13 Total: 9.25 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.24 Total: -6.30 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: 0.19 Total: -53.79 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: -0.11 Total: -12.14 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.92 -8.30 -41.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.849 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds