Wall clock time and date at job start Tue Mar 31 2020 20:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47098 * 2 1 4 4 N 1.46498 * 109.47257 * 240.00065 * 2 1 3 5 5 C 1.36943 * 119.99752 * 84.72207 * 4 2 1 6 6 H 1.08002 * 119.99793 * 0.27665 * 5 4 2 7 7 C 1.38811 * 120.00012 * 180.27737 * 5 4 2 8 8 N 1.31624 * 119.99698 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00072 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47159 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47290 * 120.00044 * 9 7 5 12 12 H 1.48503 * 109.47163 * 240.00049 * 9 7 5 13 13 C 1.53004 * 109.47083 * 120.00077 * 2 1 3 14 14 H 1.09004 * 109.46918 * 184.99986 * 13 2 1 15 15 C 1.53001 * 109.46887 * 64.99956 * 13 2 1 16 16 N 1.46499 * 109.47047 * 305.00007 * 13 2 1 17 17 C 1.34781 * 119.99668 * 204.99720 * 16 13 2 18 18 O 1.21281 * 120.00031 * 0.02562 * 17 16 13 19 19 C 1.50699 * 119.99854 * 180.02562 * 17 16 13 20 20 C 1.53000 * 109.47037 * 180.02562 * 19 17 16 21 21 C 1.52999 * 109.46827 * 180.02562 * 20 19 17 22 22 O 1.42906 * 109.46811 * 179.97438 * 21 20 19 23 23 C 1.35943 * 116.99884 * 179.97438 * 22 21 20 24 24 C 1.38713 * 120.03092 * 359.72877 * 23 22 21 25 25 C 1.38149 * 119.96855 * 179.78813 * 24 23 22 26 26 C 1.38462 * 120.03194 * 0.48739 * 25 24 23 27 27 F 1.35099 * 119.97079 * 179.72437 * 26 25 24 28 28 C 1.38454 * 120.05855 * 359.74191 * 26 25 24 29 29 C 1.38156 * 120.02763 * 0.02562 * 28 26 25 30 30 H 1.08995 * 109.47098 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47054 * 299.99648 * 1 2 3 32 32 H 1.08996 * 109.47245 * 59.99861 * 1 2 3 33 33 H 0.97001 * 120.00384 * 265.00562 * 4 2 1 34 34 H 0.96999 * 119.99739 * 180.02562 * 8 7 5 35 35 H 1.08994 * 109.47269 * 299.99642 * 15 13 2 36 36 H 1.09003 * 109.46997 * 60.00245 * 15 13 2 37 37 H 1.09000 * 109.46522 * 179.97438 * 15 13 2 38 38 H 0.96996 * 119.99988 * 25.00363 * 16 13 2 39 39 H 1.09002 * 109.47189 * 300.00297 * 19 17 16 40 40 H 1.08996 * 109.47198 * 60.00304 * 19 17 16 41 41 H 1.09002 * 109.46938 * 299.99917 * 20 19 17 42 42 H 1.08996 * 109.47313 * 59.99842 * 20 19 17 43 43 H 1.08993 * 109.47178 * 299.99617 * 21 20 19 44 44 H 1.08996 * 109.47348 * 59.99808 * 21 20 19 45 45 H 1.07999 * 120.01593 * 359.97438 * 24 23 22 46 46 H 1.08001 * 119.98637 * 180.20491 * 25 24 23 47 47 H 1.07993 * 119.98833 * 180.02562 * 28 26 25 48 48 H 1.08001 * 120.00712 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1437 -0.0088 -2.3771 6 1 1.8868 1.0391 -2.4256 7 6 2.6010 -0.6645 -3.5120 8 7 2.9136 -1.9417 -3.4530 9 14 2.7727 0.2657 -5.1227 10 1 2.3606 1.6785 -4.9248 11 1 4.1876 0.2216 -5.5715 12 1 1.9070 -0.3634 -6.1523 13 6 2.0400 -0.7213 1.2493 14 1 3.1263 -0.6444 1.2952 15 6 1.6352 -2.1955 1.1879 16 7 1.4558 -0.1037 2.4424 17 6 2.0913 -0.1939 3.6276 18 8 3.1468 -0.7860 3.7062 19 6 1.4901 0.4409 4.8550 20 6 2.4045 0.1939 6.0567 21 6 1.7938 0.8379 7.3030 22 8 2.6475 0.6067 8.4254 23 6 2.2479 1.1173 9.6202 24 6 1.0615 1.8308 9.7084 25 6 0.6545 2.3453 10.9242 26 6 1.4350 2.1579 12.0523 27 9 1.0385 2.6665 13.2395 28 6 2.6218 1.4501 11.9648 29 6 3.0288 0.9303 10.7512 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.2490 -1.6318 -1.1527 34 1 3.2335 -2.3998 -4.2459 35 1 0.5489 -2.2724 1.1421 36 1 2.0699 -2.6550 0.3002 37 1 1.9989 -2.7094 2.0777 38 1 0.6118 0.3700 2.3794 39 1 1.3837 1.5137 4.6942 40 1 0.5105 0.0035 5.0475 41 1 2.5112 -0.8788 6.2176 42 1 3.3839 0.6316 5.8639 43 1 1.6867 1.9106 7.1423 44 1 0.8145 0.3999 7.4955 45 1 0.4549 1.9813 8.8277 46 1 -0.2708 2.8980 10.9938 47 1 3.2295 1.3043 12.8455 48 1 3.9548 0.3786 10.6832 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717421398.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:39 Heat of formation + Delta-G solvation = -115.062415 kcal Electronic energy + Delta-G solvation = -27626.459553 eV Core-core repulsion = 23402.358987 eV Total energy + Delta-G solvation = -4224.100566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.81657 -41.16639 -40.87013 -38.57224 -38.22146 -35.58474 -34.78432 -33.50783 -32.22640 -31.16116 -30.33452 -29.78941 -28.08634 -26.15659 -25.12679 -24.27177 -23.35539 -22.44032 -21.28476 -20.62377 -19.49112 -19.27200 -18.47080 -18.06479 -17.44683 -17.41295 -16.80630 -16.64287 -16.53260 -16.18926 -15.86266 -15.68188 -15.49419 -15.19723 -14.91676 -14.60493 -14.54345 -14.42699 -14.02013 -13.89015 -13.57890 -13.49892 -13.14649 -13.06652 -13.00890 -12.96286 -12.81636 -12.63424 -12.42152 -12.17342 -12.07291 -11.99154 -11.71215 -11.65856 -11.56981 -11.48591 -10.95983 -10.84083 -10.17907 -10.03710 -9.10577 -9.02450 -7.93774 -5.22386 0.17078 0.20392 1.48158 1.49080 1.58614 1.73191 1.97486 2.40822 2.57571 2.60119 3.33984 3.40641 3.66141 3.75628 3.82825 3.92268 3.97078 4.00318 4.06087 4.10592 4.13667 4.27743 4.34857 4.40977 4.44026 4.50378 4.62749 4.66498 4.70235 4.75443 4.90091 4.91738 4.99200 5.07709 5.10398 5.13278 5.15713 5.21518 5.22059 5.28740 5.30241 5.51746 5.61603 5.66376 5.72237 6.28795 6.40449 6.66408 7.35126 7.37224 8.10469 8.32561 9.30109 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036207 B = 0.001401 C = 0.001387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.140970 B =19982.745057 C =20184.455970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.047 0.953 4 N -0.736 5.736 5 C -0.237 4.237 6 H 0.079 0.921 7 C -0.076 4.076 8 N -0.971 5.971 9 Si 0.971 3.029 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.294 1.294 13 C 0.149 3.851 14 H 0.052 0.948 15 C -0.149 4.149 16 N -0.707 5.707 17 C 0.504 3.496 18 O -0.592 6.592 19 C -0.124 4.124 20 C -0.102 4.102 21 C 0.058 3.942 22 O -0.331 6.331 23 C 0.112 3.888 24 C -0.180 4.180 25 C -0.113 4.113 26 C 0.035 3.965 27 F -0.151 7.151 28 C -0.114 4.114 29 C -0.137 4.137 30 H 0.050 0.950 31 H 0.081 0.919 32 H 0.041 0.959 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.074 0.926 36 H 0.047 0.953 37 H 0.049 0.951 38 H 0.416 0.584 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.164 0.836 46 H 0.156 0.844 47 H 0.156 0.844 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.271 9.645 30.922 33.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.055 3.945 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.222 1.222 13 C 0.043 3.957 14 H 0.070 0.930 15 C -0.208 4.208 16 N -0.361 5.361 17 C 0.292 3.708 18 O -0.473 6.473 19 C -0.163 4.163 20 C -0.140 4.140 21 C -0.016 4.016 22 O -0.245 6.245 23 C 0.066 3.934 24 C -0.199 4.199 25 C -0.132 4.132 26 C 0.015 3.985 27 F -0.130 7.130 28 C -0.132 4.132 29 C -0.156 4.156 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.255 0.745 39 H 0.147 0.853 40 H 0.149 0.851 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.105 0.895 44 H 0.106 0.894 45 H 0.181 0.819 46 H 0.174 0.826 47 H 0.174 0.826 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.384 9.304 30.837 33.283 hybrid contribution 0.136 -0.016 -1.147 1.155 sum -8.247 9.287 29.689 32.183 Atomic orbital electron populations 1.22353 0.96400 1.01600 1.01345 1.20562 0.94009 0.94847 0.85059 0.93487 1.42687 1.78673 1.10608 1.05840 1.19670 1.34904 0.94311 0.87969 0.90329 1.25533 1.03008 0.96848 1.01446 1.69827 1.52814 1.10237 1.29267 0.85102 0.76584 0.78310 0.79937 1.18820 1.22526 1.22151 1.20822 0.97165 0.93019 0.84719 0.93008 1.22022 1.02313 0.95586 1.00841 1.46033 1.26337 1.56496 1.07253 1.21439 0.84269 0.79366 0.85688 1.90720 1.25046 1.45171 1.86346 1.21542 1.01069 1.04346 0.89379 1.21143 0.99357 1.01684 0.91805 1.23008 0.93674 1.01921 0.83004 1.86083 1.49708 1.73091 1.15647 1.19270 0.93912 0.94243 0.85968 1.21409 0.97166 1.01688 0.99623 1.21216 1.00725 1.00340 0.90875 1.17876 0.96875 1.02026 0.81691 1.91470 1.90904 1.85719 1.44927 1.21154 0.95545 0.97456 0.99073 1.20517 1.01637 1.03594 0.89856 0.93105 0.90015 0.93994 0.79062 0.94137 0.90711 0.93360 0.93170 0.74514 0.85294 0.85064 0.92025 0.92198 0.89496 0.89384 0.81874 0.82586 0.82586 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 9.01 71.98 0.65 -3.94 16 2 C 0.16 5.95 2.93 44.99 0.13 6.08 16 3 H 0.05 1.74 8.08 -2.39 -0.02 1.73 16 4 N -0.74 -35.78 5.03 -322.94 -1.63 -37.41 16 5 C -0.24 -12.78 9.93 84.03 0.83 -11.94 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 7 C -0.08 -4.32 5.50 84.86 0.47 -3.85 16 8 N -0.97 -59.16 13.06 21.65 0.28 -58.88 16 9 Si 0.97 45.63 29.55 68.60 2.03 47.66 16 10 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 11 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 13 C 0.15 4.87 2.62 44.99 0.12 4.99 16 14 H 0.05 2.08 7.58 -2.39 -0.02 2.06 16 15 C -0.15 -4.91 9.00 71.98 0.65 -4.26 16 16 N -0.71 -16.03 4.99 -442.52 -2.21 -18.24 16 17 C 0.50 11.88 7.79 87.66 0.68 12.56 16 18 O -0.59 -20.59 15.64 -3.03 -0.05 -20.64 16 19 C -0.12 -1.40 5.70 29.85 0.17 -1.23 16 20 C -0.10 -1.55 4.87 30.59 0.15 -1.40 16 21 C 0.06 0.59 4.74 71.98 0.34 0.93 16 22 O -0.33 -5.44 10.14 -92.90 -0.94 -6.39 16 23 C 0.11 1.63 6.69 22.49 0.15 1.78 16 24 C -0.18 -1.92 9.04 22.36 0.20 -1.72 16 25 C -0.11 -1.28 10.02 22.30 0.22 -1.06 16 26 C 0.03 0.50 7.30 22.37 0.16 0.66 16 27 F -0.15 -2.50 17.27 44.97 0.78 -1.73 16 28 C -0.11 -1.46 10.02 22.30 0.22 -1.24 16 29 C -0.14 -1.91 9.98 22.36 0.22 -1.69 16 30 H 0.05 1.53 6.56 -2.39 -0.02 1.51 16 31 H 0.08 1.57 6.29 -2.39 -0.02 1.55 16 32 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.38 19.79 5.77 -92.71 -0.54 19.26 16 34 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 35 H 0.07 2.15 6.56 -2.39 -0.02 2.13 16 36 H 0.05 1.86 6.29 -2.39 -0.02 1.85 16 37 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.42 6.29 6.58 -92.71 -0.61 5.68 16 39 H 0.13 0.71 8.14 -2.39 -0.02 0.69 16 40 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 43 H 0.09 0.52 7.65 -2.39 -0.02 0.50 16 44 H 0.09 0.50 7.67 -2.39 -0.02 0.48 16 45 H 0.16 0.82 6.30 -2.91 -0.02 0.80 16 46 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 48 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -75.44 396.55 3.48 -71.96 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.16 Total: 28.99 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.38 Total: -5.33 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -3.55 Total: -114.52 kcal Atomic # 8 Polarization: -26.04 SS G_CDS: -0.99 Total: -27.02 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.78 Total: -1.73 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -75.44 3.48 -71.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717421398.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.105 kcal (2) G-P(sol) polarization free energy of solvation -75.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds