Wall clock time and date at job start Tue Mar 31 2020 20:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47443 * 2 1 4 4 N 1.46499 * 109.47065 * 120.00599 * 2 1 3 5 5 C 1.36943 * 119.99634 * 274.99543 * 4 2 1 6 6 H 1.08002 * 120.00373 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99910 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47243 * 59.99850 * 9 7 5 11 11 H 1.48502 * 109.47302 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47409 * 300.00006 * 9 7 5 13 13 C 1.52995 * 109.47034 * 240.00093 * 2 1 3 14 14 H 1.09005 * 109.47531 * 174.99870 * 13 2 1 15 15 C 1.53004 * 109.47248 * 295.00361 * 13 2 1 16 16 N 1.46504 * 109.47052 * 55.00174 * 13 2 1 17 17 C 1.34775 * 120.00092 * 155.00223 * 16 13 2 18 18 O 1.21287 * 119.99831 * 359.97438 * 17 16 13 19 19 C 1.50697 * 120.00286 * 179.97438 * 17 16 13 20 20 C 1.52995 * 109.47523 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47487 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47267 * 180.02562 * 21 20 19 23 23 C 1.35956 * 117.00026 * 179.97438 * 22 21 20 24 24 C 1.38657 * 120.06128 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.96964 * 180.02562 * 24 23 22 26 26 C 1.38265 * 120.09281 * 359.97438 * 25 24 23 27 27 C 1.38248 * 120.12705 * 0.02562 * 26 25 24 28 28 C 1.38332 * 120.03366 * 359.97438 * 27 26 25 29 29 F 1.35103 * 120.05240 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47231 * 59.99828 * 1 2 3 31 31 H 1.09002 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46968 * 299.99733 * 1 2 3 33 33 H 0.96998 * 120.00268 * 94.99765 * 4 2 1 34 34 H 0.97000 * 119.99967 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47334 * 59.99788 * 15 13 2 36 36 H 1.09001 * 109.47128 * 179.97438 * 15 13 2 37 37 H 1.09005 * 109.46683 * 299.99534 * 15 13 2 38 38 H 0.97000 * 120.00081 * 334.99499 * 16 13 2 39 39 H 1.09004 * 109.46976 * 60.00006 * 19 17 16 40 40 H 1.09001 * 109.47011 * 300.00149 * 19 17 16 41 41 H 1.09007 * 109.47098 * 60.00288 * 20 19 17 42 42 H 1.09001 * 109.47491 * 300.00335 * 20 19 17 43 43 H 1.08994 * 109.46599 * 59.99869 * 21 20 19 44 44 H 1.09001 * 109.46881 * 300.00527 * 21 20 19 45 45 H 1.08004 * 120.01774 * 0.03769 * 24 23 22 46 46 H 1.08000 * 119.95526 * 180.27319 * 25 24 23 47 47 H 1.08001 * 119.93128 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.98480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9262 -1.9387 3.4496 9 14 2.7901 0.2697 5.1183 10 1 1.4674 0.8055 5.5289 11 1 3.2992 -0.6487 6.1684 12 1 3.7446 1.3929 4.9373 13 6 2.0399 -0.7212 -1.2492 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1880 16 7 1.4558 -0.1035 -2.4424 17 6 2.0911 -0.1937 -3.6275 18 8 3.1467 -0.7857 -3.7062 19 6 1.4900 0.4412 -4.8550 20 6 2.4043 0.1944 -6.0566 21 6 1.7942 0.8395 -7.3027 22 8 2.6479 0.6084 -8.4251 23 6 2.2482 1.1192 -9.6200 24 6 1.0594 1.8271 -9.7101 25 6 0.6547 2.3449 -10.9256 26 6 1.4339 2.1586 -12.0525 27 6 2.6199 1.4534 -11.9672 28 6 3.0300 0.9327 -10.7530 29 9 4.1893 0.2439 -10.6691 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2489 -1.6319 1.1525 34 1 3.2496 -2.3960 4.2416 35 1 0.5488 -2.2723 -1.1421 36 1 1.9980 -2.7091 -2.0783 37 1 2.0698 -2.6550 -0.3003 38 1 0.6117 0.3702 -2.3794 39 1 1.3837 1.5140 -4.6941 40 1 0.5103 0.0038 -5.0474 41 1 2.5109 -0.8784 -6.2177 42 1 3.3838 0.6320 -5.8639 43 1 1.6879 1.9121 -7.1413 44 1 0.8146 0.4022 -7.4956 45 1 0.4500 1.9740 -8.8305 46 1 -0.2691 2.9001 -10.9946 47 1 1.1149 2.5641 -13.0013 48 1 3.2270 1.3095 -12.8488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717442535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:44 Heat of formation + Delta-G solvation = -92.153576 kcal Electronic energy + Delta-G solvation = -27903.524006 eV Core-core repulsion = 23680.416842 eV Total energy + Delta-G solvation = -4223.107164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.09142 -40.47268 -39.79017 -37.99207 -37.01149 -34.10426 -33.90638 -31.82714 -31.17297 -30.38803 -29.46269 -28.22990 -27.42792 -24.48853 -23.96443 -23.08068 -22.81231 -21.71753 -20.27096 -19.22844 -18.80632 -17.70940 -17.43173 -17.11106 -16.92545 -16.72048 -15.93480 -15.59653 -15.36269 -15.16471 -14.84303 -14.69691 -14.47426 -14.23746 -13.86411 -13.55308 -13.44313 -13.20405 -12.91490 -12.68016 -12.51705 -12.39192 -12.25987 -11.97829 -11.85525 -11.70946 -11.64547 -11.38337 -11.30797 -10.98186 -10.95065 -10.83596 -10.48563 -10.29706 -10.01126 -9.81555 -9.60567 -9.43559 -8.95683 -8.81354 -8.64623 -7.02540 -5.80029 -3.09762 0.64009 0.78697 2.54454 2.74172 3.10285 3.35271 3.42392 3.47151 3.47907 3.81091 4.21423 4.33252 4.51048 4.51149 4.57567 4.62154 4.69347 4.74734 4.88021 4.97915 5.01550 5.11334 5.26479 5.37950 5.46340 5.47645 5.57091 5.60927 5.63308 5.69536 5.74907 5.81337 5.89095 5.95005 6.04975 6.13597 6.20247 6.27445 6.37717 6.45917 6.61296 6.69403 6.88227 6.90693 7.04986 7.65963 7.67135 8.36072 8.39219 9.49588 10.04989 10.39716 11.42442 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.001509 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.996831 B =18545.574369 C =18850.267709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.719 5.719 5 C -0.243 4.243 6 H 0.070 0.930 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.908 3.092 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.720 5.720 17 C 0.509 3.491 18 O -0.540 6.540 19 C -0.137 4.137 20 C -0.104 4.104 21 C 0.059 3.941 22 O -0.304 6.304 23 C 0.102 3.898 24 C -0.184 4.184 25 C -0.090 4.090 26 C -0.133 4.133 27 C -0.117 4.117 28 C 0.066 3.934 29 F -0.131 7.131 30 H 0.032 0.968 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.076 0.924 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.533 8.884 -31.039 33.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.374 4.374 6 H 0.088 0.912 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.212 1.212 13 C 0.030 3.970 14 H 0.106 0.894 15 C -0.217 4.217 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.016 4.016 22 O -0.218 6.218 23 C 0.055 3.945 24 C -0.203 4.203 25 C -0.108 4.108 26 C -0.151 4.151 27 C -0.136 4.136 28 C 0.046 3.954 29 F -0.110 7.110 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.233 0.767 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.516 8.412 -30.845 32.843 hybrid contribution -0.356 0.400 1.089 1.214 sum -7.872 8.811 -29.756 32.016 Atomic orbital electron populations 1.22536 0.99364 1.01243 0.99684 1.20359 0.92147 0.95572 0.86221 0.93114 1.42445 1.78233 1.10786 1.04818 1.19181 1.37101 0.93938 0.87193 0.91184 1.24744 1.01875 0.95990 0.98109 1.69645 1.50496 1.08676 1.29105 0.86257 0.77752 0.78617 0.83460 1.21287 1.21667 1.21245 1.21334 0.99041 0.92859 0.83724 0.89449 1.22136 1.01426 0.95872 1.02273 1.46267 1.25782 1.56721 1.08486 1.20443 0.85080 0.80374 0.84612 1.90733 1.22528 1.42823 1.85574 1.21522 1.00482 1.02685 0.93079 1.21231 0.99896 1.03084 0.90024 1.22944 0.93431 1.00712 0.84504 1.86162 1.48517 1.72468 1.14621 1.19064 0.93877 0.95896 0.85639 1.21224 0.96535 1.02510 1.00057 1.21050 0.99701 0.98240 0.91793 1.20946 0.94467 1.00385 0.99298 1.21056 0.98052 0.98605 0.95847 1.17062 0.84867 1.00704 0.92735 1.91524 1.45499 1.77112 1.96862 0.94900 0.92819 0.92418 0.77768 0.93363 0.92588 0.93142 0.90530 0.76694 0.88628 0.88676 0.89772 0.89731 0.91576 0.91612 0.84356 0.84985 0.84831 0.84061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.01 37.16 0.33 -2.38 16 2 C 0.17 3.16 2.93 -67.94 -0.20 2.96 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.72 -17.45 5.03 -53.43 -0.27 -17.72 16 5 C -0.24 -6.59 9.93 -15.05 -0.15 -6.74 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 12 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 13 C 0.14 2.28 2.62 -67.93 -0.18 2.10 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.16 -2.66 9.00 37.16 0.33 -2.33 16 16 N -0.72 -9.29 4.99 -53.80 -0.27 -9.55 16 17 C 0.51 6.71 7.79 -10.99 -0.09 6.62 16 18 O -0.54 -9.58 15.65 5.55 0.09 -9.50 16 19 C -0.14 -1.11 5.70 -27.89 -0.16 -1.27 16 20 C -0.10 -0.98 4.87 -26.73 -0.13 -1.11 16 21 C 0.06 0.44 4.74 37.16 0.18 0.62 16 22 O -0.30 -3.26 10.00 -19.60 -0.20 -3.46 16 23 C 0.10 0.97 6.69 -39.18 -0.26 0.71 16 24 C -0.18 -1.25 9.04 -39.45 -0.36 -1.60 16 25 C -0.09 -0.48 10.04 -39.59 -0.40 -0.88 16 26 C -0.13 -0.71 10.04 -39.57 -0.40 -1.11 16 27 C -0.12 -0.81 10.02 -39.54 -0.40 -1.20 16 28 C 0.07 0.65 7.31 -39.30 -0.29 0.36 16 29 F -0.13 -1.55 17.11 2.25 0.04 -1.51 16 30 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 31 H 0.05 0.88 6.57 -51.93 -0.34 0.54 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.39 9.95 5.77 -40.82 -0.24 9.71 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.08 1.45 6.29 -51.93 -0.33 1.12 16 38 H 0.40 4.00 6.58 -40.82 -0.27 3.73 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 44 H 0.07 0.37 7.66 -51.93 -0.40 -0.03 16 45 H 0.14 0.65 6.30 -52.48 -0.33 0.32 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 47 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 48 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.89 396.38 -8.31 -42.20 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -7.13 Total: 9.18 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -2.25 Total: -5.65 kcal Atomic # 7 Polarization: -54.52 SS G_CDS: 0.19 Total: -54.33 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.11 Total: -12.95 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.89 -8.31 -42.20 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.957 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds