Wall clock time and date at job start Tue Mar 31 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47443 * 2 1 4 4 N 1.46499 * 109.47065 * 120.00599 * 2 1 3 5 5 C 1.36943 * 119.99634 * 274.99543 * 4 2 1 6 6 H 1.08002 * 120.00373 * 0.02562 * 5 4 2 7 7 C 1.38818 * 119.99910 * 180.02562 * 5 4 2 8 8 N 1.31615 * 119.99912 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00020 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47243 * 59.99850 * 9 7 5 11 11 H 1.48502 * 109.47302 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47409 * 300.00006 * 9 7 5 13 13 C 1.52995 * 109.47034 * 240.00093 * 2 1 3 14 14 H 1.09005 * 109.47531 * 174.99870 * 13 2 1 15 15 C 1.53004 * 109.47248 * 295.00361 * 13 2 1 16 16 N 1.46504 * 109.47052 * 55.00174 * 13 2 1 17 17 C 1.34775 * 120.00092 * 155.00223 * 16 13 2 18 18 O 1.21287 * 119.99831 * 359.97438 * 17 16 13 19 19 C 1.50697 * 120.00286 * 179.97438 * 17 16 13 20 20 C 1.52995 * 109.47523 * 179.97438 * 19 17 16 21 21 C 1.53004 * 109.47487 * 180.02562 * 20 19 17 22 22 O 1.42893 * 109.47267 * 180.02562 * 21 20 19 23 23 C 1.35956 * 117.00026 * 179.97438 * 22 21 20 24 24 C 1.38657 * 120.06128 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.96964 * 180.02562 * 24 23 22 26 26 C 1.38265 * 120.09281 * 359.97438 * 25 24 23 27 27 C 1.38248 * 120.12705 * 0.02562 * 26 25 24 28 28 C 1.38332 * 120.03366 * 359.97438 * 27 26 25 29 29 F 1.35103 * 120.05240 * 180.02562 * 28 27 26 30 30 H 1.09002 * 109.47231 * 59.99828 * 1 2 3 31 31 H 1.09002 * 109.47443 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46968 * 299.99733 * 1 2 3 33 33 H 0.96998 * 120.00268 * 94.99765 * 4 2 1 34 34 H 0.97000 * 119.99967 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.47334 * 59.99788 * 15 13 2 36 36 H 1.09001 * 109.47128 * 179.97438 * 15 13 2 37 37 H 1.09005 * 109.46683 * 299.99534 * 15 13 2 38 38 H 0.97000 * 120.00081 * 334.99499 * 16 13 2 39 39 H 1.09004 * 109.46976 * 60.00006 * 19 17 16 40 40 H 1.09001 * 109.47011 * 300.00149 * 19 17 16 41 41 H 1.09007 * 109.47098 * 60.00288 * 20 19 17 42 42 H 1.09001 * 109.47491 * 300.00335 * 20 19 17 43 43 H 1.08994 * 109.46599 * 59.99869 * 21 20 19 44 44 H 1.09001 * 109.46881 * 300.00527 * 21 20 19 45 45 H 1.08004 * 120.01774 * 0.03769 * 24 23 22 46 46 H 1.08000 * 119.95526 * 180.27319 * 25 24 23 47 47 H 1.08001 * 119.93128 * 179.97438 * 26 25 24 48 48 H 1.07998 * 119.98480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1491 -0.0076 2.3757 6 1 1.8919 1.0402 2.4244 7 6 2.6123 -0.6619 3.5090 8 7 2.9262 -1.9387 3.4496 9 14 2.7901 0.2697 5.1183 10 1 1.4674 0.8055 5.5289 11 1 3.2992 -0.6487 6.1684 12 1 3.7446 1.3929 4.9373 13 6 2.0399 -0.7212 -1.2492 14 1 3.1263 -0.6443 -1.2952 15 6 1.6351 -2.1954 -1.1880 16 7 1.4558 -0.1035 -2.4424 17 6 2.0911 -0.1937 -3.6275 18 8 3.1467 -0.7857 -3.7062 19 6 1.4900 0.4412 -4.8550 20 6 2.4043 0.1944 -6.0566 21 6 1.7942 0.8395 -7.3027 22 8 2.6479 0.6084 -8.4251 23 6 2.2482 1.1192 -9.6200 24 6 1.0594 1.8271 -9.7101 25 6 0.6547 2.3449 -10.9256 26 6 1.4339 2.1586 -12.0525 27 6 2.6199 1.4534 -11.9672 28 6 3.0300 0.9327 -10.7530 29 9 4.1893 0.2439 -10.6691 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 2.2489 -1.6319 1.1525 34 1 3.2496 -2.3960 4.2416 35 1 0.5488 -2.2723 -1.1421 36 1 1.9980 -2.7091 -2.0783 37 1 2.0698 -2.6550 -0.3003 38 1 0.6117 0.3702 -2.3794 39 1 1.3837 1.5140 -4.6941 40 1 0.5103 0.0038 -5.0474 41 1 2.5109 -0.8784 -6.2177 42 1 3.3838 0.6320 -5.8639 43 1 1.6879 1.9121 -7.1413 44 1 0.8146 0.4022 -7.4956 45 1 0.4500 1.9740 -8.8305 46 1 -0.2691 2.9001 -10.9946 47 1 1.1149 2.5641 -13.0013 48 1 3.2270 1.3095 -12.8488 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717442535.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:43 Heat of formation + Delta-G solvation = -114.609135 kcal Electronic energy + Delta-G solvation = -27904.497752 eV Core-core repulsion = 23680.416842 eV Total energy + Delta-G solvation = -4224.080910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.83451 -41.13733 -40.84827 -38.64383 -38.35326 -35.59526 -34.85783 -33.52163 -31.64905 -31.26774 -30.67518 -29.79915 -28.17468 -26.15753 -25.14688 -24.12140 -23.40914 -22.45732 -21.31327 -20.63716 -19.52531 -19.35893 -18.40101 -17.86456 -17.56701 -17.49609 -16.86641 -16.69151 -16.56102 -16.08586 -15.96097 -15.77320 -15.47922 -15.34071 -15.03860 -14.86142 -14.50258 -14.39501 -13.89625 -13.78231 -13.54218 -13.18999 -13.12613 -13.08405 -12.98538 -12.77905 -12.76462 -12.62621 -12.40380 -12.31656 -12.18285 -11.99538 -11.92229 -11.65851 -11.60885 -11.57489 -10.93944 -10.86758 -10.05794 -9.92735 -9.21056 -9.02897 -7.93557 -5.22425 0.14319 0.28785 1.47922 1.50805 1.56752 1.70572 1.90409 2.35485 2.59621 2.62952 3.26651 3.40312 3.64426 3.79116 3.89403 3.91470 3.93086 3.99341 4.06019 4.09331 4.21784 4.32286 4.34301 4.36416 4.41127 4.46284 4.60877 4.61631 4.67293 4.73387 4.89102 4.98299 5.00511 5.04771 5.06570 5.11920 5.20882 5.22111 5.28212 5.28267 5.45229 5.50655 5.59865 5.65750 5.74410 6.28390 6.33717 6.64355 7.34624 7.35373 8.10160 8.32463 9.29838 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030864 B = 0.001509 C = 0.001485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.996831 B =18545.574369 C =18850.267709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.047 0.953 4 N -0.735 5.735 5 C -0.240 4.240 6 H 0.079 0.921 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.973 3.027 10 H -0.275 1.275 11 H -0.298 1.298 12 H -0.280 1.280 13 C 0.148 3.852 14 H 0.050 0.950 15 C -0.149 4.149 16 N -0.706 5.706 17 C 0.504 3.496 18 O -0.594 6.594 19 C -0.122 4.122 20 C -0.103 4.103 21 C 0.060 3.940 22 O -0.339 6.339 23 C 0.078 3.922 24 C -0.184 4.184 25 C -0.084 4.084 26 C -0.129 4.129 27 C -0.120 4.120 28 C 0.022 3.978 29 F -0.156 7.156 30 H 0.082 0.918 31 H 0.050 0.950 32 H 0.041 0.959 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.164 0.836 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 11.710 -32.911 36.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.372 4.372 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.802 3.198 10 H -0.201 1.201 11 H -0.225 1.225 12 H -0.207 1.207 13 C 0.042 3.958 14 H 0.069 0.931 15 C -0.207 4.207 16 N -0.360 5.360 17 C 0.292 3.708 18 O -0.474 6.474 19 C -0.161 4.161 20 C -0.141 4.141 21 C -0.014 4.014 22 O -0.254 6.254 23 C 0.032 3.968 24 C -0.203 4.203 25 C -0.102 4.102 26 C -0.147 4.147 27 C -0.139 4.139 28 C 0.003 3.997 29 F -0.135 7.135 30 H 0.100 0.900 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.180 0.820 46 H 0.183 0.817 47 H 0.182 0.818 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.173 11.304 -32.763 36.415 hybrid contribution 0.737 -0.419 1.519 1.739 sum -10.436 10.885 -31.245 34.693 Atomic orbital electron populations 1.22350 0.96324 1.01618 1.01363 1.20556 0.94069 0.94814 0.85000 0.93504 1.42669 1.78705 1.10511 1.05901 1.19602 1.35109 0.94338 0.88144 0.90359 1.25550 1.02880 0.96870 1.01516 1.69814 1.52509 1.10293 1.29478 0.85224 0.78004 0.77215 0.79375 1.20123 1.22492 1.20650 1.20836 0.97128 0.93065 0.84752 0.93122 1.22022 1.02361 0.95561 1.00804 1.46018 1.26327 1.56473 1.07190 1.21432 0.84267 0.79377 0.85729 1.90726 1.25121 1.45208 1.86359 1.21526 1.00970 1.04466 0.89147 1.21152 0.99396 1.01507 0.92046 1.23033 0.93605 1.02049 0.82696 1.86104 1.50140 1.73364 1.15778 1.19347 0.95183 0.97209 0.85040 1.21552 0.95499 1.01544 1.01692 1.21520 1.00494 0.97150 0.91007 1.21378 0.93382 0.99081 1.00822 1.21335 0.98962 0.98301 0.95253 1.17637 0.85007 1.02608 0.94463 1.91446 1.46977 1.77987 1.97086 0.89987 0.93090 0.93958 0.79080 0.94124 0.90623 0.93283 0.93317 0.74448 0.85099 0.84858 0.92322 0.92514 0.89226 0.89108 0.81977 0.81672 0.81800 0.82771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.65 9.01 71.98 0.65 -4.00 16 2 C 0.16 6.07 2.93 44.99 0.13 6.20 16 3 H 0.05 1.77 8.08 -2.39 -0.02 1.75 16 4 N -0.74 -36.21 5.03 -322.94 -1.63 -37.84 16 5 C -0.24 -13.09 9.93 84.03 0.83 -12.25 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 7 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 8 N -0.97 -59.54 13.06 21.65 0.28 -59.26 16 9 Si 0.97 45.91 29.55 68.60 2.03 47.94 16 10 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 11 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 C 0.15 4.99 2.62 44.99 0.12 5.11 16 14 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 15 C -0.15 -5.03 9.00 71.98 0.65 -4.39 16 16 N -0.71 -16.67 4.99 -442.52 -2.21 -18.88 16 17 C 0.50 12.59 7.79 87.66 0.68 13.27 16 18 O -0.59 -21.72 15.65 -3.05 -0.05 -21.77 16 19 C -0.12 -1.56 5.70 29.85 0.17 -1.39 16 20 C -0.10 -1.85 4.87 30.59 0.15 -1.70 16 21 C 0.06 0.78 4.74 71.98 0.34 1.12 16 22 O -0.34 -7.35 10.00 -93.06 -0.93 -8.28 16 23 C 0.08 1.45 6.69 22.53 0.15 1.60 16 24 C -0.18 -1.97 9.04 22.36 0.20 -1.77 16 25 C -0.08 -0.58 10.04 22.26 0.22 -0.36 16 26 C -0.13 -0.99 10.04 22.28 0.22 -0.77 16 27 C -0.12 -1.56 10.02 22.29 0.22 -1.33 16 28 C 0.02 0.45 7.31 22.45 0.16 0.62 16 29 F -0.16 -4.04 17.11 44.97 0.77 -3.27 16 30 H 0.08 1.61 6.29 -2.39 -0.02 1.59 16 31 H 0.05 1.55 6.57 -2.39 -0.02 1.54 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.38 20.02 5.77 -92.71 -0.54 19.49 16 34 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 35 H 0.07 2.22 6.57 -2.39 -0.02 2.21 16 36 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 37 H 0.05 1.92 6.29 -2.38 -0.02 1.90 16 38 H 0.42 6.58 6.58 -92.71 -0.61 5.97 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 0.80 8.14 -2.39 -0.02 0.79 16 41 H 0.06 1.33 8.10 -2.38 -0.02 1.31 16 42 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 43 H 0.09 0.71 7.66 -2.39 -0.02 0.70 16 44 H 0.09 0.70 7.66 -2.39 -0.02 0.68 16 45 H 0.16 0.82 6.30 -2.91 -0.02 0.80 16 46 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 47 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 48 H 0.15 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -80.36 396.38 3.49 -76.87 By element: Atomic # 1 Polarization: 28.55 SS G_CDS: -0.16 Total: 28.39 kcal Atomic # 6 Polarization: -9.28 SS G_CDS: 5.38 Total: -3.90 kcal Atomic # 7 Polarization: -112.43 SS G_CDS: -3.55 Total: -115.98 kcal Atomic # 8 Polarization: -29.07 SS G_CDS: -0.98 Total: -30.05 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.77 Total: -3.27 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -80.36 3.49 -76.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442535.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.741 kcal (2) G-P(sol) polarization free energy of solvation -80.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds