Wall clock time and date at job start Tue Mar 31 2020 20:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47255 * 2 1 4 4 N 1.46504 * 109.46941 * 119.99459 * 2 1 3 5 5 C 1.34775 * 120.00092 * 275.00224 * 4 2 1 6 6 O 1.21287 * 119.99831 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00286 * 179.97438 * 5 4 2 8 8 C 1.52995 * 109.47523 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47487 * 180.02562 * 8 7 5 10 10 O 1.42893 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.35956 * 117.00026 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.06128 * 359.97438 * 11 10 9 13 13 C 1.38184 * 119.96964 * 180.02562 * 12 11 10 14 14 C 1.38265 * 120.09281 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.12705 * 0.02562 * 14 13 12 16 16 C 1.38332 * 120.03366 * 359.97438 * 15 14 13 17 17 F 1.35103 * 120.05240 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47248 * 239.99340 * 2 1 3 19 19 H 1.08999 * 109.47126 * 300.00339 * 18 2 1 20 20 C 1.52994 * 109.47216 * 180.02562 * 18 2 1 21 21 N 1.46504 * 109.47052 * 60.00187 * 18 2 1 22 22 C 1.36930 * 119.99952 * 205.00301 * 21 18 2 23 23 H 1.08002 * 120.00477 * 359.97438 * 22 21 18 24 24 C 1.38821 * 120.00093 * 180.02562 * 22 21 18 25 25 N 1.31618 * 119.99406 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00109 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47126 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47186 * 119.99618 * 26 24 22 29 29 H 1.48495 * 109.46849 * 239.99626 * 26 24 22 30 30 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47128 * 300.00523 * 1 2 3 32 32 H 1.09005 * 109.46683 * 60.00194 * 1 2 3 33 33 H 0.97000 * 120.00081 * 94.99500 * 4 2 1 34 34 H 1.09004 * 109.46976 * 60.00006 * 7 5 4 35 35 H 1.09001 * 109.47011 * 300.00149 * 7 5 4 36 36 H 1.09007 * 109.47098 * 60.00288 * 8 7 5 37 37 H 1.09001 * 109.47491 * 300.00335 * 8 7 5 38 38 H 1.08994 * 109.46599 * 59.99869 * 9 8 7 39 39 H 1.09001 * 109.46881 * 300.00527 * 9 8 7 40 40 H 1.08004 * 120.01774 * 0.03769 * 12 11 10 41 41 H 1.08000 * 119.95526 * 180.27319 * 13 12 11 42 42 H 1.08001 * 119.93128 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.98480 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47310 * 60.00136 * 20 18 2 45 45 H 1.09001 * 109.47095 * 180.02562 * 20 18 2 46 46 H 1.08999 * 109.47239 * 300.00134 * 20 18 2 47 47 H 0.97000 * 120.00081 * 24.99819 * 21 18 2 48 48 H 0.97003 * 119.99355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1588 2.4114 7 6 2.6487 -0.7285 3.5879 8 6 2.7009 0.2548 4.7588 9 6 3.2109 -0.4663 6.0082 10 8 3.2590 0.4520 7.1019 11 6 3.6931 -0.0323 8.2958 12 6 4.0643 -1.3632 8.4119 13 6 4.5048 -1.8535 9.6264 14 6 4.5765 -1.0187 10.7263 15 6 4.2074 0.3089 10.6149 16 6 3.7657 0.8053 9.4017 17 9 3.4053 2.1028 9.2923 18 6 2.0400 -0.7214 -1.2491 19 1 1.6767 -1.7490 -1.2490 20 6 3.5700 -0.7219 -1.2488 21 7 1.5517 -0.0308 -2.4454 22 6 1.4209 -0.7141 -3.6248 23 1 1.6781 -1.7619 -3.6734 24 6 0.9587 -0.0597 -4.7585 25 7 0.6458 1.2174 -4.6995 26 14 0.7810 -0.9915 -6.3676 27 1 1.1958 -2.4036 -6.1703 28 1 -0.6357 -0.9486 -6.8106 29 1 1.6421 -0.3629 -7.4013 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6317 1.1528 34 1 3.6479 -1.1210 3.3988 35 1 1.9758 -1.5503 3.8327 36 1 1.7018 0.6478 4.9481 37 1 3.3740 1.0764 4.5137 38 1 4.2098 -0.8588 5.8186 39 1 2.5381 -1.2880 6.2534 40 1 4.0094 -2.0163 7.5535 41 1 4.7981 -2.8891 9.7155 42 1 4.9207 -1.4048 11.6743 43 1 4.2647 0.9591 11.4754 44 1 3.9330 -1.2359 -0.3588 45 1 3.9333 -1.2355 -2.1389 46 1 3.9337 0.3056 -1.2486 47 1 1.3210 0.9103 -2.4019 48 1 0.3225 1.6746 -5.4916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717442537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:54 Heat of formation + Delta-G solvation = -96.754551 kcal Electronic energy + Delta-G solvation = -27899.243314 eV Core-core repulsion = 23675.936636 eV Total energy + Delta-G solvation = -4223.306677 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.09278 -40.47338 -39.76406 -37.98747 -36.83868 -34.11059 -33.92689 -31.78818 -31.17423 -30.41113 -29.59606 -28.43717 -27.38505 -24.05759 -23.94657 -22.96259 -22.63969 -21.62541 -20.24715 -19.92441 -18.82143 -17.65036 -17.40331 -17.11508 -16.92615 -16.70640 -15.93553 -15.64211 -15.38300 -15.16658 -14.84249 -14.68401 -14.41167 -13.92954 -13.66635 -13.59255 -13.29345 -13.18724 -13.05554 -12.64643 -12.61695 -12.41566 -12.25856 -11.92209 -11.82434 -11.76483 -11.62968 -11.37965 -11.19323 -10.98342 -10.97662 -10.86537 -10.70965 -10.20834 -9.91887 -9.83287 -9.61959 -9.43680 -9.04224 -8.77344 -8.64760 -7.01504 -5.80153 -3.09836 0.63888 0.78572 2.54251 2.74250 3.10164 3.34396 3.40846 3.46681 3.48658 3.80938 4.21268 4.33116 4.50533 4.50916 4.57568 4.62018 4.69234 4.74620 4.87860 4.97910 5.01200 5.10980 5.24588 5.36116 5.47224 5.47501 5.56969 5.65829 5.69418 5.72682 5.76043 5.87968 5.88984 5.94750 6.08150 6.19517 6.21442 6.36898 6.40365 6.50313 6.60538 6.79088 6.88071 6.93502 7.00402 7.66219 7.67048 8.35644 8.38437 9.48889 10.04335 10.39250 11.42250 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.001501 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.543281 B =18648.621462 C =19068.780283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 H 0.084 0.916 4 N -0.718 5.718 5 C 0.511 3.489 6 O -0.540 6.540 7 C -0.137 4.137 8 C -0.104 4.104 9 C 0.059 3.941 10 O -0.304 6.304 11 C 0.102 3.898 12 C -0.184 4.184 13 C -0.090 4.090 14 C -0.133 4.133 15 C -0.117 4.117 16 C 0.066 3.934 17 F -0.131 7.131 18 C 0.169 3.831 19 H 0.050 0.950 20 C -0.164 4.164 21 N -0.718 5.718 22 C -0.240 4.240 23 H 0.071 0.929 24 C -0.012 4.012 25 N -0.930 5.930 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.080 0.920 33 H 0.397 0.603 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.139 0.861 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.142 0.858 44 H 0.035 0.965 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.385 0.615 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.246 -9.150 31.125 33.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.030 3.970 3 H 0.103 0.897 4 N -0.369 5.369 5 C 0.296 3.704 6 O -0.417 6.417 7 C -0.177 4.177 8 C -0.142 4.142 9 C -0.016 4.016 10 O -0.218 6.218 11 C 0.055 3.945 12 C -0.203 4.203 13 C -0.108 4.108 14 C -0.151 4.151 15 C -0.136 4.136 16 C 0.046 3.954 17 F -0.110 7.110 18 C 0.058 3.942 19 H 0.068 0.932 20 C -0.224 4.224 21 N -0.360 5.360 22 C -0.371 4.371 23 H 0.089 0.911 24 C -0.208 4.208 25 N -0.578 5.578 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.159 0.841 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.066 0.934 47 H 0.220 0.780 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.930 -8.165 30.918 32.947 hybrid contribution -0.027 -0.675 -1.091 1.283 sum 7.904 -8.840 29.827 32.097 Atomic orbital electron populations 1.22047 0.94965 1.01688 1.02340 1.21342 0.94419 0.97604 0.83618 0.89743 1.46090 1.66976 1.13891 1.09905 1.20411 0.78010 0.87447 0.84517 1.90733 1.49969 1.16012 1.84969 1.21519 1.03501 0.99463 0.93262 1.21231 1.04212 0.98464 0.90327 1.22944 1.01288 0.92115 0.85241 1.86162 1.80492 1.39020 1.16098 1.19064 0.97081 0.92555 0.85776 1.21224 1.05273 0.93767 1.00060 1.21051 0.97591 1.00220 0.91922 1.20946 1.01940 0.92726 0.99482 1.21056 0.99772 0.96991 0.95739 1.17062 1.06190 0.79023 0.93095 1.91524 1.89666 1.33179 1.96627 1.20389 0.92084 0.95545 0.86187 0.93220 1.22445 0.99099 1.01098 0.99774 1.42299 1.78179 1.10704 1.04839 1.19237 1.36837 0.93890 0.87109 0.91102 1.24747 1.02029 0.95960 0.98059 1.69675 1.50630 1.08634 1.28849 0.86126 0.77312 0.78736 0.84038 1.20598 1.21871 1.21889 0.93134 0.93490 0.90132 0.76913 0.88638 0.88669 0.89777 0.89747 0.91583 0.91613 0.84357 0.84985 0.84831 0.84060 0.94610 0.92672 0.93435 0.78043 0.93482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.33 37.16 0.35 -2.26 16 2 C 0.13 2.25 2.21 -67.93 -0.15 2.10 16 3 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 4 N -0.72 -9.08 4.38 -53.80 -0.24 -9.32 16 5 C 0.51 6.63 7.79 -10.99 -0.09 6.54 16 6 O -0.54 -9.50 15.65 5.55 0.09 -9.41 16 7 C -0.14 -1.09 5.70 -27.89 -0.16 -1.25 16 8 C -0.10 -0.97 4.87 -26.73 -0.13 -1.10 16 9 C 0.06 0.44 4.74 37.16 0.18 0.61 16 10 O -0.30 -3.25 10.00 -19.60 -0.20 -3.45 16 11 C 0.10 0.97 6.69 -39.18 -0.26 0.70 16 12 C -0.18 -1.24 9.04 -39.45 -0.36 -1.60 16 13 C -0.09 -0.48 10.04 -39.59 -0.40 -0.88 16 14 C -0.13 -0.71 10.04 -39.57 -0.40 -1.10 16 15 C -0.12 -0.81 10.02 -39.54 -0.40 -1.20 16 16 C 0.07 0.65 7.31 -39.30 -0.29 0.36 16 17 F -0.13 -1.54 17.11 2.25 0.04 -1.51 16 18 C 0.17 3.14 2.52 -67.93 -0.17 2.97 16 19 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 20 C -0.16 -2.81 9.33 37.15 0.35 -2.47 16 21 N -0.72 -17.25 4.43 -53.43 -0.24 -17.49 16 22 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 25 N -0.93 -27.67 13.06 55.49 0.72 -26.95 16 26 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.08 1.59 7.45 -51.93 -0.39 1.20 16 33 H 0.40 3.84 8.39 -40.82 -0.34 3.49 16 34 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.08 0.92 8.10 -51.93 -0.42 0.49 16 37 H 0.08 0.93 8.10 -51.93 -0.42 0.51 16 38 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 39 H 0.07 0.37 7.66 -51.93 -0.40 -0.03 16 40 H 0.14 0.64 6.30 -52.48 -0.33 0.31 16 41 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 42 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 43 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 44 H 0.03 0.49 7.44 -51.93 -0.39 0.10 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 47 H 0.39 10.04 7.58 -40.82 -0.31 9.73 16 48 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 404.08 15.07 6.09 6.09 Total: -1.00 -33.64 404.08 -8.48 -42.12 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -7.56 Total: 8.51 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -2.17 Total: -5.56 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: 0.25 Total: -53.75 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: -0.11 Total: -12.86 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.64 -8.48 -42.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.635 kcal (2) G-P(sol) polarization free energy of solvation -33.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds