Wall clock time and date at job start Tue Mar 31 2020 20:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.47255 * 2 1 4 4 N 1.46504 * 109.46941 * 119.99459 * 2 1 3 5 5 C 1.34775 * 120.00092 * 275.00224 * 4 2 1 6 6 O 1.21287 * 119.99831 * 359.97438 * 5 4 2 7 7 C 1.50697 * 120.00286 * 179.97438 * 5 4 2 8 8 C 1.52995 * 109.47523 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47487 * 180.02562 * 8 7 5 10 10 O 1.42893 * 109.47267 * 180.02562 * 9 8 7 11 11 C 1.35956 * 117.00026 * 179.97438 * 10 9 8 12 12 C 1.38657 * 120.06128 * 359.97438 * 11 10 9 13 13 C 1.38184 * 119.96964 * 180.02562 * 12 11 10 14 14 C 1.38265 * 120.09281 * 359.97438 * 13 12 11 15 15 C 1.38248 * 120.12705 * 0.02562 * 14 13 12 16 16 C 1.38332 * 120.03366 * 359.97438 * 15 14 13 17 17 F 1.35103 * 120.05240 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47248 * 239.99340 * 2 1 3 19 19 H 1.08999 * 109.47126 * 300.00339 * 18 2 1 20 20 C 1.52994 * 109.47216 * 180.02562 * 18 2 1 21 21 N 1.46504 * 109.47052 * 60.00187 * 18 2 1 22 22 C 1.36930 * 119.99952 * 205.00301 * 21 18 2 23 23 H 1.08002 * 120.00477 * 359.97438 * 22 21 18 24 24 C 1.38821 * 120.00093 * 180.02562 * 22 21 18 25 25 N 1.31618 * 119.99406 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00109 * 179.97438 * 24 22 21 27 27 H 1.48495 * 109.47126 * 359.97438 * 26 24 22 28 28 H 1.48496 * 109.47186 * 119.99618 * 26 24 22 29 29 H 1.48495 * 109.46849 * 239.99626 * 26 24 22 30 30 H 1.08999 * 109.47334 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47128 * 300.00523 * 1 2 3 32 32 H 1.09005 * 109.46683 * 60.00194 * 1 2 3 33 33 H 0.97000 * 120.00081 * 94.99500 * 4 2 1 34 34 H 1.09004 * 109.46976 * 60.00006 * 7 5 4 35 35 H 1.09001 * 109.47011 * 300.00149 * 7 5 4 36 36 H 1.09007 * 109.47098 * 60.00288 * 8 7 5 37 37 H 1.09001 * 109.47491 * 300.00335 * 8 7 5 38 38 H 1.08994 * 109.46599 * 59.99869 * 9 8 7 39 39 H 1.09001 * 109.46881 * 300.00527 * 9 8 7 40 40 H 1.08004 * 120.01774 * 0.03769 * 12 11 10 41 41 H 1.08000 * 119.95526 * 180.27319 * 13 12 11 42 42 H 1.08001 * 119.93128 * 179.97438 * 14 13 12 43 43 H 1.07998 * 119.98480 * 180.02562 * 15 14 13 44 44 H 1.08996 * 109.47310 * 60.00136 * 20 18 2 45 45 H 1.09001 * 109.47095 * 180.02562 * 20 18 2 46 46 H 1.08999 * 109.47239 * 300.00134 * 20 18 2 47 47 H 0.97000 * 120.00081 * 24.99819 * 21 18 2 48 48 H 0.97003 * 119.99355 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6905 1.1963 5 6 2.1470 -0.0181 2.3572 6 8 1.8590 1.1588 2.4114 7 6 2.6487 -0.7285 3.5879 8 6 2.7009 0.2548 4.7588 9 6 3.2109 -0.4663 6.0082 10 8 3.2590 0.4520 7.1019 11 6 3.6931 -0.0323 8.2958 12 6 4.0643 -1.3632 8.4119 13 6 4.5048 -1.8535 9.6264 14 6 4.5765 -1.0187 10.7263 15 6 4.2074 0.3089 10.6149 16 6 3.7657 0.8053 9.4017 17 9 3.4053 2.1028 9.2923 18 6 2.0400 -0.7214 -1.2491 19 1 1.6767 -1.7490 -1.2490 20 6 3.5700 -0.7219 -1.2488 21 7 1.5517 -0.0308 -2.4454 22 6 1.4209 -0.7141 -3.6248 23 1 1.6781 -1.7619 -3.6734 24 6 0.9587 -0.0597 -4.7585 25 7 0.6458 1.2174 -4.6995 26 14 0.7810 -0.9915 -6.3676 27 1 1.1958 -2.4036 -6.1703 28 1 -0.6357 -0.9486 -6.8106 29 1 1.6421 -0.3629 -7.4013 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 2.2490 -1.6317 1.1528 34 1 3.6479 -1.1210 3.3988 35 1 1.9758 -1.5503 3.8327 36 1 1.7018 0.6478 4.9481 37 1 3.3740 1.0764 4.5137 38 1 4.2098 -0.8588 5.8186 39 1 2.5381 -1.2880 6.2534 40 1 4.0094 -2.0163 7.5535 41 1 4.7981 -2.8891 9.7155 42 1 4.9207 -1.4048 11.6743 43 1 4.2647 0.9591 11.4754 44 1 3.9330 -1.2359 -0.3588 45 1 3.9333 -1.2355 -2.1389 46 1 3.9337 0.3056 -1.2486 47 1 1.3210 0.9103 -2.4019 48 1 0.3225 1.6746 -5.4916 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717442537.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:53 Heat of formation + Delta-G solvation = -118.598212 kcal Electronic energy + Delta-G solvation = -27900.190526 eV Core-core repulsion = 23675.936636 eV Total energy + Delta-G solvation = -4224.253890 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.83356 -41.11739 -40.81649 -38.58180 -38.24649 -35.59117 -34.84899 -33.50216 -31.64881 -31.31102 -30.66990 -30.13713 -28.12852 -25.91381 -24.83962 -23.89002 -23.38940 -22.39329 -21.52254 -21.14620 -19.47272 -19.30270 -18.36602 -17.84998 -17.56344 -17.48856 -16.99263 -16.68564 -16.49948 -16.05886 -15.90333 -15.49138 -15.34427 -15.24998 -15.00751 -14.86309 -14.51133 -14.34761 -14.07040 -13.78818 -13.48005 -13.33325 -13.17216 -13.02193 -12.94192 -12.77589 -12.74524 -12.57995 -12.40402 -12.31720 -12.23393 -12.08901 -11.92084 -11.72729 -11.59765 -11.44791 -10.99728 -10.85157 -10.04882 -9.92683 -9.20976 -9.00971 -7.91984 -5.20902 0.14368 0.28847 1.49229 1.49594 1.59421 1.72507 1.90721 2.35419 2.61100 2.63000 3.26727 3.42649 3.64707 3.78095 3.83839 3.92021 3.92366 4.01915 4.08045 4.21322 4.22776 4.33444 4.34644 4.38760 4.41295 4.47305 4.60019 4.61355 4.69141 4.81931 4.89568 4.98128 5.00553 5.05558 5.06797 5.11958 5.20433 5.23869 5.28276 5.31729 5.45280 5.52653 5.53475 5.63453 5.74486 6.28986 6.33844 6.66656 7.35061 7.37284 8.09333 8.32015 9.31862 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.036519 B = 0.001501 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.543281 B =18648.621462 C =19068.780283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.149 3.851 3 H 0.053 0.947 4 N -0.704 5.704 5 C 0.505 3.495 6 O -0.594 6.594 7 C -0.121 4.121 8 C -0.103 4.103 9 C 0.060 3.940 10 O -0.339 6.339 11 C 0.078 3.922 12 C -0.184 4.184 13 C -0.084 4.084 14 C -0.129 4.129 15 C -0.120 4.120 16 C 0.022 3.978 17 F -0.156 7.156 18 C 0.167 3.833 19 H 0.064 0.936 20 C -0.154 4.154 21 N -0.732 5.732 22 C -0.231 4.231 23 H 0.083 0.917 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.971 3.029 27 H -0.262 1.262 28 H -0.297 1.297 29 H -0.298 1.298 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.047 0.953 33 H 0.418 0.582 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.057 0.943 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.163 0.837 41 H 0.166 0.834 42 H 0.164 0.836 43 H 0.155 0.845 44 H 0.078 0.922 45 H 0.042 0.958 46 H 0.028 0.972 47 H 0.370 0.630 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.806 -13.707 33.085 37.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.043 3.957 3 H 0.071 0.929 4 N -0.357 5.357 5 C 0.294 3.706 6 O -0.474 6.474 7 C -0.161 4.161 8 C -0.141 4.141 9 C -0.014 4.014 10 O -0.254 6.254 11 C 0.032 3.968 12 C -0.203 4.203 13 C -0.102 4.102 14 C -0.147 4.147 15 C -0.138 4.138 16 C 0.003 3.997 17 F -0.135 7.135 18 C 0.058 3.942 19 H 0.082 0.918 20 C -0.214 4.214 21 N -0.372 5.372 22 C -0.363 4.363 23 H 0.100 0.900 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.801 3.199 27 H -0.186 1.186 28 H -0.225 1.225 29 H -0.226 1.226 30 H 0.085 0.915 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.255 0.745 34 H 0.150 0.850 35 H 0.150 0.850 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.180 0.820 41 H 0.183 0.817 42 H 0.182 0.818 43 H 0.172 0.828 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.202 0.798 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 9.528 -12.812 32.924 36.592 hybrid contribution -0.468 0.696 -1.548 1.760 sum 9.060 -12.116 31.377 34.834 Atomic orbital electron populations 1.21924 0.95410 1.02139 1.00660 1.20848 0.93913 0.96236 0.84703 0.92881 1.45848 1.66598 1.14686 1.08534 1.21379 0.76708 0.86936 0.85610 1.90727 1.52178 1.18735 1.85784 1.21519 1.06041 0.99068 0.89452 1.21153 1.02160 0.98523 0.92264 1.23035 1.03091 0.91742 0.83522 1.86105 1.81173 1.40875 1.17232 1.19346 0.98366 0.93836 0.85224 1.21551 1.04463 0.92652 1.01621 1.21519 0.95848 1.01699 0.91107 1.21377 1.00534 0.91803 1.00953 1.21334 0.99201 0.98203 0.95110 1.17637 1.08703 0.78529 0.94849 1.91446 1.90277 1.34902 1.96865 1.20589 0.93015 0.95655 0.84910 0.91805 1.22299 0.97430 1.00405 1.01269 1.42509 1.78450 1.10209 1.06054 1.19659 1.34475 0.94323 0.87865 0.89953 1.25548 1.03173 0.96798 1.01481 1.69845 1.52817 1.10376 1.29243 0.85097 0.76530 0.78375 0.79905 1.18566 1.22467 1.22608 0.91475 0.93611 0.93366 0.74487 0.85050 0.84969 0.92389 0.92475 0.89213 0.89167 0.81982 0.81678 0.81805 0.82772 0.90307 0.93876 0.95251 0.79818 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.93 9.33 71.98 0.67 -4.26 16 2 C 0.15 4.92 2.21 44.99 0.10 5.02 16 3 H 0.05 2.12 7.58 -2.38 -0.02 2.10 16 4 N -0.70 -16.14 4.38 -442.52 -1.94 -18.08 16 5 C 0.51 12.34 7.79 87.66 0.68 13.02 16 6 O -0.59 -21.41 15.65 -3.05 -0.05 -21.46 16 7 C -0.12 -1.51 5.70 29.85 0.17 -1.34 16 8 C -0.10 -1.83 4.87 30.59 0.15 -1.68 16 9 C 0.06 0.77 4.74 71.98 0.34 1.11 16 10 O -0.34 -7.32 10.00 -93.06 -0.93 -8.25 16 11 C 0.08 1.45 6.69 22.53 0.15 1.60 16 12 C -0.18 -1.96 9.04 22.36 0.20 -1.76 16 13 C -0.08 -0.58 10.04 22.26 0.22 -0.36 16 14 C -0.13 -0.99 10.04 22.28 0.22 -0.77 16 15 C -0.12 -1.55 10.02 22.29 0.22 -1.33 16 16 C 0.02 0.45 7.31 22.45 0.16 0.62 16 17 F -0.16 -4.02 17.11 44.97 0.77 -3.26 16 18 C 0.17 6.03 2.52 44.99 0.11 6.14 16 19 H 0.06 2.16 8.08 -2.39 -0.02 2.14 16 20 C -0.15 -5.00 9.33 71.98 0.67 -4.33 16 21 N -0.73 -35.54 4.43 -322.95 -1.43 -36.97 16 22 C -0.23 -12.32 9.93 84.04 0.83 -11.49 16 23 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 24 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 25 N -0.97 -59.60 13.06 21.65 0.28 -59.31 16 26 Si 0.97 45.46 29.55 68.60 2.03 47.49 16 27 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 30 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.05 1.97 7.45 -2.38 -0.02 1.95 16 33 H 0.42 6.25 8.39 -92.71 -0.78 5.47 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 37 H 0.06 1.31 8.10 -2.39 -0.02 1.29 16 38 H 0.09 0.70 7.66 -2.39 -0.02 0.68 16 39 H 0.09 0.69 7.66 -2.39 -0.02 0.67 16 40 H 0.16 0.81 6.30 -2.91 -0.02 0.79 16 41 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 42 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 43 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 44 H 0.08 1.86 7.44 -2.39 -0.02 1.84 16 45 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.37 20.07 7.58 -92.71 -0.70 19.37 16 48 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -79.51 404.08 3.61 -75.89 By element: Atomic # 1 Polarization: 28.18 SS G_CDS: -0.51 Total: 27.67 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 5.39 Total: -3.73 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -3.09 Total: -114.36 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.98 Total: -29.71 kcal Atomic # 9 Polarization: -4.02 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -79.51 3.61 -75.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442537.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.705 kcal (2) G-P(sol) polarization free energy of solvation -79.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds