Wall clock time and date at job start Tue Mar 31 2020 20:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47366 * 2 1 4 4 N 1.46499 * 109.47235 * 239.99589 * 2 1 3 5 5 C 1.36934 * 119.99672 * 85.00337 * 4 2 1 6 6 H 1.08002 * 120.00398 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99949 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99867 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47130 * 120.00121 * 9 7 5 12 12 H 1.48508 * 109.46852 * 239.99560 * 9 7 5 13 13 C 1.53004 * 109.46887 * 119.99755 * 2 1 3 14 14 H 1.08995 * 109.47216 * 184.99960 * 13 2 1 15 15 C 1.52999 * 109.47083 * 64.99956 * 13 2 1 16 16 N 1.46498 * 109.47065 * 304.99850 * 13 2 1 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 13 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 C 1.52990 * 109.47398 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47353 * 179.97438 * 20 19 17 22 22 O 1.42901 * 109.47882 * 180.02562 * 21 20 19 23 23 C 1.35952 * 117.00868 * 180.02562 * 22 21 20 24 24 C 1.38669 * 120.05876 * 359.97438 * 23 22 21 25 25 C 1.38180 * 119.96820 * 179.97438 * 24 23 22 26 26 C 1.38257 * 120.09619 * 0.02562 * 25 24 23 27 27 C 1.38260 * 120.12403 * 0.02562 * 26 25 24 28 28 C 1.38333 * 120.03381 * 359.69661 * 27 26 25 29 29 F 1.35100 * 120.04939 * 180.27828 * 28 27 26 30 30 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46997 * 300.00490 * 1 2 3 32 32 H 1.09000 * 109.46522 * 59.99712 * 1 2 3 33 33 H 0.96996 * 119.99988 * 265.00628 * 4 2 1 34 34 H 0.96994 * 120.00581 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47098 * 300.00077 * 15 13 2 36 36 H 1.09003 * 109.47054 * 59.99725 * 15 13 2 37 37 H 1.08996 * 109.47245 * 179.97438 * 15 13 2 38 38 H 0.97001 * 120.00384 * 25.00562 * 16 13 2 39 39 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 40 40 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 41 41 H 1.08998 * 109.47508 * 300.00200 * 20 19 17 42 42 H 1.09011 * 109.47182 * 60.00188 * 20 19 17 43 43 H 1.08999 * 109.47616 * 300.00389 * 21 20 19 44 44 H 1.09003 * 109.47280 * 60.00024 * 21 20 19 45 45 H 1.08003 * 120.01183 * 359.95161 * 24 23 22 46 46 H 1.07997 * 119.94874 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.93727 * 179.97438 * 26 25 24 48 48 H 1.08008 * 119.98195 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6114 -0.6621 -3.5091 8 7 2.9244 -1.9391 -3.4501 9 14 2.7906 0.2700 -5.1181 10 1 2.3767 1.6824 -4.9207 11 1 4.2074 0.2261 -5.5605 12 1 1.9294 -0.3578 -6.1524 13 6 2.0400 -0.7212 1.2493 14 1 3.1262 -0.6443 1.2953 15 6 1.6352 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0884 -0.1985 3.6287 18 8 3.1438 -0.7908 3.7075 19 6 1.4845 0.4316 4.8573 20 6 2.3959 0.1799 6.0600 21 6 1.7831 0.8200 7.3072 22 8 2.6346 0.5855 8.4305 23 6 2.2323 1.0916 9.6265 24 6 1.0433 1.7994 9.7166 25 6 0.6360 2.3126 10.9332 26 6 1.4125 2.1218 12.0611 27 6 2.5992 1.4175 11.9755 28 6 3.0092 0.8966 10.7613 29 9 4.1660 0.2036 10.6785 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.2477 -2.3964 -4.2420 35 1 0.5489 -2.2723 1.1421 36 1 2.0698 -2.6550 0.3003 37 1 1.9988 -2.7093 2.0778 38 1 0.6117 0.3702 2.3794 39 1 1.3786 1.5050 4.7004 40 1 0.5043 -0.0064 5.0457 41 1 2.5022 -0.8935 6.2171 42 1 3.3759 0.6183 5.8713 43 1 1.6771 1.8934 7.1500 44 1 0.8030 0.3821 7.4961 45 1 0.4362 1.9499 8.8361 46 1 -0.2903 2.8634 11.0031 47 1 1.0919 2.5243 13.0106 48 1 3.2039 1.2695 12.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717442538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:58 Heat of formation + Delta-G solvation = -92.323719 kcal Electronic energy + Delta-G solvation = -27903.689372 eV Core-core repulsion = 23680.574830 eV Total energy + Delta-G solvation = -4223.114542 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.09248 -40.47287 -39.79239 -37.99227 -37.01442 -34.10664 -33.91072 -31.82997 -31.17273 -30.38892 -29.46502 -28.23367 -27.42916 -24.49256 -23.96752 -23.08362 -22.81379 -21.71859 -20.27218 -19.23139 -18.80708 -17.71104 -17.43464 -17.11193 -16.92622 -16.72170 -15.93572 -15.59844 -15.36309 -15.16655 -14.84356 -14.69974 -14.47748 -14.23771 -13.86864 -13.55369 -13.43646 -13.20443 -12.92320 -12.68330 -12.52046 -12.39381 -12.26022 -11.98298 -11.85617 -11.71043 -11.64854 -11.38389 -11.30690 -10.98299 -10.96505 -10.85738 -10.49321 -10.26019 -9.98385 -9.82152 -9.61267 -9.43561 -8.97083 -8.81504 -8.64665 -7.02732 -5.80672 -3.10329 0.63978 0.78658 2.54355 2.74061 3.10249 3.35147 3.41417 3.47143 3.49071 3.81060 4.21400 4.33216 4.50934 4.51042 4.57188 4.62082 4.69304 4.74682 4.87951 4.97813 5.01454 5.11257 5.26354 5.37748 5.46088 5.47599 5.57074 5.60678 5.63044 5.69511 5.74819 5.81111 5.89062 5.94922 6.04740 6.13328 6.20200 6.27234 6.37483 6.45751 6.61097 6.69173 6.88188 6.90482 7.04707 7.66443 7.67178 8.35769 8.38742 9.49151 10.04551 10.39233 11.41972 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.001509 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.464681 B =18550.994244 C =18859.346937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.051 0.949 4 N -0.720 5.720 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.159 4.159 16 N -0.720 5.720 17 C 0.509 3.491 18 O -0.540 6.540 19 C -0.137 4.137 20 C -0.104 4.104 21 C 0.059 3.941 22 O -0.304 6.304 23 C 0.102 3.898 24 C -0.185 4.185 25 C -0.090 4.090 26 C -0.133 4.133 27 C -0.117 4.117 28 C 0.066 3.934 29 F -0.131 7.131 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.057 0.943 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.050 0.950 38 H 0.397 0.603 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.139 0.861 46 H 0.132 0.868 47 H 0.134 0.866 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.590 8.874 31.104 33.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.069 0.931 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.739 3.261 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.030 3.970 14 H 0.105 0.895 15 C -0.217 4.217 16 N -0.373 5.373 17 C 0.295 3.705 18 O -0.417 6.417 19 C -0.178 4.178 20 C -0.142 4.142 21 C -0.016 4.016 22 O -0.218 6.218 23 C 0.055 3.945 24 C -0.203 4.203 25 C -0.108 4.108 26 C -0.151 4.151 27 C -0.136 4.136 28 C 0.046 3.954 29 F -0.110 7.110 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.076 0.924 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.069 0.931 38 H 0.233 0.767 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.102 0.898 42 H 0.103 0.897 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.156 0.844 46 H 0.150 0.850 47 H 0.152 0.848 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.578 8.419 30.918 32.928 hybrid contribution -0.349 0.373 -1.096 1.209 sum -7.927 8.792 29.822 32.086 Atomic orbital electron populations 1.22534 0.99357 1.01242 0.99692 1.20362 0.92148 0.95577 0.86215 0.93100 1.42459 1.78205 1.10800 1.04842 1.19270 1.36870 0.93972 0.87137 0.91068 1.24746 1.01934 0.95984 0.98118 1.69662 1.50671 1.08673 1.28901 0.86116 0.77356 0.78754 0.83922 1.20569 1.21827 1.21870 1.21330 0.99042 0.92852 0.83729 0.89451 1.22135 1.01424 0.95876 1.02287 1.46266 1.25885 1.56694 1.08414 1.20443 0.85098 0.80347 0.84617 1.90732 1.22531 1.42755 1.85635 1.21522 1.00481 1.02709 0.93057 1.21228 0.99902 1.03110 0.89995 1.22945 0.93469 1.00699 0.84474 1.86161 1.48497 1.72615 1.14501 1.19064 0.93899 0.95913 0.85598 1.21227 0.96513 1.02537 1.00052 1.21047 0.99710 0.98246 0.91780 1.20946 0.94461 1.00405 0.99283 1.21062 0.98035 0.98601 0.95863 1.17059 0.85021 1.00581 0.92707 1.91523 1.45714 1.76887 1.96873 0.92817 0.94894 0.92415 0.77774 0.93461 0.92583 0.90532 0.93136 0.76692 0.88628 0.88678 0.89771 0.89729 0.91582 0.91607 0.84356 0.84988 0.84831 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 9.01 37.16 0.33 -2.37 16 2 C 0.17 3.15 2.93 -67.93 -0.20 2.95 16 3 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 4 N -0.72 -17.44 5.03 -53.42 -0.27 -17.71 16 5 C -0.24 -6.54 9.93 -15.06 -0.15 -6.69 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 8 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 9 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 13 C 0.14 2.28 2.62 -67.93 -0.18 2.10 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 15 C -0.16 -2.66 9.00 37.16 0.33 -2.33 16 16 N -0.72 -9.27 4.99 -53.81 -0.27 -9.54 16 17 C 0.51 6.70 7.79 -10.98 -0.09 6.61 16 18 O -0.54 -9.57 15.65 5.55 0.09 -9.49 16 19 C -0.14 -1.11 5.70 -27.89 -0.16 -1.27 16 20 C -0.10 -0.97 4.87 -26.74 -0.13 -1.10 16 21 C 0.06 0.44 4.74 37.16 0.18 0.62 16 22 O -0.30 -3.26 10.00 -19.59 -0.20 -3.45 16 23 C 0.10 0.97 6.69 -39.18 -0.26 0.71 16 24 C -0.18 -1.24 9.04 -39.44 -0.36 -1.60 16 25 C -0.09 -0.48 10.04 -39.60 -0.40 -0.88 16 26 C -0.13 -0.71 10.04 -39.57 -0.40 -1.11 16 27 C -0.12 -0.81 10.02 -39.54 -0.40 -1.20 16 28 C 0.07 0.65 7.31 -39.30 -0.29 0.36 16 29 F -0.13 -1.55 17.11 2.25 0.04 -1.51 16 30 H 0.05 0.88 6.57 -51.93 -0.34 0.54 16 31 H 0.03 0.40 6.29 -51.93 -0.33 0.07 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.39 9.94 5.77 -40.82 -0.24 9.70 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.06 0.86 6.57 -51.93 -0.34 0.52 16 36 H 0.08 1.44 6.29 -51.93 -0.33 1.12 16 37 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.40 3.99 6.58 -40.82 -0.27 3.73 16 39 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 42 H 0.08 0.93 8.10 -51.92 -0.42 0.51 16 43 H 0.07 0.38 7.66 -51.93 -0.40 -0.02 16 44 H 0.07 0.37 7.66 -51.93 -0.40 -0.03 16 45 H 0.14 0.65 6.30 -52.48 -0.33 0.32 16 46 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 47 H 0.13 0.38 8.06 -52.49 -0.42 -0.05 16 48 H 0.14 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 396.38 15.07 5.97 5.97 Total: -1.00 -33.94 396.38 -8.31 -42.25 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -7.13 Total: 9.07 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: -2.25 Total: -5.63 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: 0.19 Total: -54.32 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: -0.11 Total: -12.94 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.04 Total: -1.51 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.94 -8.31 -42.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.075 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds