Wall clock time and date at job start Tue Mar 31 2020 20:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.47366 * 2 1 4 4 N 1.46499 * 109.47235 * 239.99589 * 2 1 3 5 5 C 1.36934 * 119.99672 * 85.00337 * 4 2 1 6 6 H 1.08002 * 120.00398 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99949 * 180.02562 * 5 4 2 8 8 N 1.31616 * 120.00226 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99867 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47271 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47130 * 120.00121 * 9 7 5 12 12 H 1.48508 * 109.46852 * 239.99560 * 9 7 5 13 13 C 1.53004 * 109.46887 * 119.99755 * 2 1 3 14 14 H 1.08995 * 109.47216 * 184.99960 * 13 2 1 15 15 C 1.52999 * 109.47083 * 64.99956 * 13 2 1 16 16 N 1.46498 * 109.47065 * 304.99850 * 13 2 1 17 17 C 1.34777 * 119.99828 * 204.72115 * 16 13 2 18 18 O 1.21283 * 120.00222 * 0.28168 * 17 16 13 19 19 C 1.50703 * 120.00290 * 180.27728 * 17 16 13 20 20 C 1.52990 * 109.47398 * 180.02562 * 19 17 16 21 21 C 1.52995 * 109.47353 * 179.97438 * 20 19 17 22 22 O 1.42901 * 109.47882 * 180.02562 * 21 20 19 23 23 C 1.35952 * 117.00868 * 180.02562 * 22 21 20 24 24 C 1.38669 * 120.05876 * 359.97438 * 23 22 21 25 25 C 1.38180 * 119.96820 * 179.97438 * 24 23 22 26 26 C 1.38257 * 120.09619 * 0.02562 * 25 24 23 27 27 C 1.38260 * 120.12403 * 0.02562 * 26 25 24 28 28 C 1.38333 * 120.03381 * 359.69661 * 27 26 25 29 29 F 1.35100 * 120.04939 * 180.27828 * 28 27 26 30 30 H 1.08994 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46997 * 300.00490 * 1 2 3 32 32 H 1.09000 * 109.46522 * 59.99712 * 1 2 3 33 33 H 0.96996 * 119.99988 * 265.00628 * 4 2 1 34 34 H 0.96994 * 120.00581 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47098 * 300.00077 * 15 13 2 36 36 H 1.09003 * 109.47054 * 59.99725 * 15 13 2 37 37 H 1.08996 * 109.47245 * 179.97438 * 15 13 2 38 38 H 0.97001 * 120.00384 * 25.00562 * 16 13 2 39 39 H 1.08998 * 109.46954 * 300.00581 * 19 17 16 40 40 H 1.09002 * 109.46946 * 59.99717 * 19 17 16 41 41 H 1.08998 * 109.47508 * 300.00200 * 20 19 17 42 42 H 1.09011 * 109.47182 * 60.00188 * 20 19 17 43 43 H 1.08999 * 109.47616 * 300.00389 * 21 20 19 44 44 H 1.09003 * 109.47280 * 60.00024 * 21 20 19 45 45 H 1.08003 * 120.01183 * 359.95161 * 24 23 22 46 46 H 1.07997 * 119.94874 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.93727 * 179.97438 * 26 25 24 48 48 H 1.08008 * 119.98195 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4243 7 6 2.6114 -0.6621 -3.5091 8 7 2.9244 -1.9391 -3.4501 9 14 2.7906 0.2700 -5.1181 10 1 2.3767 1.6824 -4.9207 11 1 4.2074 0.2261 -5.5605 12 1 1.9294 -0.3578 -6.1524 13 6 2.0400 -0.7212 1.2493 14 1 3.1262 -0.6443 1.2953 15 6 1.6352 -2.1954 1.1881 16 7 1.4558 -0.1035 2.4424 17 6 2.0884 -0.1985 3.6287 18 8 3.1438 -0.7908 3.7075 19 6 1.4845 0.4316 4.8573 20 6 2.3959 0.1799 6.0600 21 6 1.7831 0.8200 7.3072 22 8 2.6346 0.5855 8.4305 23 6 2.2323 1.0916 9.6265 24 6 1.0433 1.7994 9.7166 25 6 0.6360 2.3126 10.9332 26 6 1.4125 2.1218 12.0611 27 6 2.5992 1.4175 11.9755 28 6 3.0092 0.8966 10.7613 29 9 4.1660 0.2036 10.6785 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3632 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1525 34 1 3.2477 -2.3964 -4.2420 35 1 0.5489 -2.2723 1.1421 36 1 2.0698 -2.6550 0.3003 37 1 1.9988 -2.7093 2.0778 38 1 0.6117 0.3702 2.3794 39 1 1.3786 1.5050 4.7004 40 1 0.5043 -0.0064 5.0457 41 1 2.5022 -0.8935 6.2171 42 1 3.3759 0.6183 5.8713 43 1 1.6771 1.8934 7.1500 44 1 0.8030 0.3821 7.4961 45 1 0.4362 1.9499 8.8361 46 1 -0.2903 2.8634 11.0031 47 1 1.0919 2.5243 13.0106 48 1 3.2039 1.2695 12.8582 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717442538.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:57 Heat of formation + Delta-G solvation = -114.829215 kcal Electronic energy + Delta-G solvation = -27904.665283 eV Core-core repulsion = 23680.574830 eV Total energy + Delta-G solvation = -4224.090454 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.83504 -41.13736 -40.84843 -38.64446 -38.35403 -35.59998 -34.85835 -33.52318 -31.64837 -31.26895 -30.67593 -29.80088 -28.17485 -26.16316 -25.15017 -24.12229 -23.40873 -22.45728 -21.31306 -20.63860 -19.52793 -19.36114 -18.40140 -17.86448 -17.56695 -17.49599 -16.86737 -16.69554 -16.56111 -16.08397 -15.96365 -15.77643 -15.47735 -15.34040 -15.03561 -14.86585 -14.50418 -14.39960 -13.89735 -13.78197 -13.54749 -13.19105 -13.12647 -13.08357 -12.98248 -12.82606 -12.77897 -12.64040 -12.40422 -12.31556 -12.07779 -12.00458 -11.92205 -11.66548 -11.60741 -11.57149 -10.96665 -10.86790 -10.05748 -9.92690 -9.21038 -9.03186 -7.94210 -5.22969 0.14354 0.28784 1.47671 1.48656 1.58258 1.70630 1.90381 2.35391 2.59150 2.62967 3.26682 3.40113 3.64458 3.79148 3.89356 3.91488 3.93059 3.99124 4.06054 4.09284 4.21793 4.32266 4.34290 4.36419 4.41138 4.46299 4.60881 4.61636 4.67292 4.73324 4.89078 4.98313 5.00528 5.04800 5.06606 5.11947 5.20891 5.22143 5.28231 5.28278 5.45247 5.50975 5.59919 5.65743 5.74428 6.28173 6.33747 6.64389 7.34393 7.35323 8.09739 8.31942 9.29679 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.030984 B = 0.001509 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.464681 B =18550.994244 C =18859.346937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.164 3.836 3 H 0.047 0.953 4 N -0.736 5.736 5 C -0.237 4.237 6 H 0.079 0.921 7 C -0.077 4.077 8 N -0.971 5.971 9 Si 0.972 3.028 10 H -0.264 1.264 11 H -0.298 1.298 12 H -0.294 1.294 13 C 0.148 3.852 14 H 0.051 0.949 15 C -0.149 4.149 16 N -0.706 5.706 17 C 0.504 3.496 18 O -0.594 6.594 19 C -0.122 4.122 20 C -0.103 4.103 21 C 0.060 3.940 22 O -0.339 6.339 23 C 0.078 3.922 24 C -0.184 4.184 25 C -0.084 4.084 26 C -0.129 4.129 27 C -0.120 4.120 28 C 0.022 3.978 29 F -0.156 7.156 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.375 0.625 34 H 0.250 0.750 35 H 0.075 0.925 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.416 0.584 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.058 0.942 42 H 0.056 0.944 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.163 0.837 46 H 0.166 0.834 47 H 0.164 0.836 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 11.724 33.008 37.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.065 0.935 4 N -0.378 5.378 5 C -0.369 4.369 6 H 0.097 0.903 7 C -0.269 4.269 8 N -0.622 5.622 9 Si 0.801 3.199 10 H -0.188 1.188 11 H -0.225 1.225 12 H -0.221 1.221 13 C 0.042 3.958 14 H 0.069 0.931 15 C -0.208 4.208 16 N -0.360 5.360 17 C 0.292 3.708 18 O -0.474 6.474 19 C -0.161 4.161 20 C -0.141 4.141 21 C -0.014 4.014 22 O -0.254 6.254 23 C 0.032 3.968 24 C -0.203 4.203 25 C -0.102 4.102 26 C -0.147 4.147 27 C -0.139 4.139 28 C 0.003 3.997 29 F -0.135 7.135 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.061 0.939 33 H 0.209 0.791 34 H 0.059 0.941 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.256 0.744 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.077 0.923 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.109 0.891 45 H 0.180 0.820 46 H 0.183 0.817 47 H 0.182 0.818 48 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -11.245 11.336 32.869 36.542 hybrid contribution 0.748 -0.456 -1.535 1.767 sum -10.498 10.880 31.334 34.790 Atomic orbital electron populations 1.22350 0.96309 1.01622 1.01383 1.20560 0.94077 0.94823 0.84985 0.93475 1.42685 1.78661 1.10527 1.05925 1.19673 1.34805 0.94328 0.88073 0.90296 1.25544 1.02977 0.96866 1.01502 1.69823 1.52696 1.10299 1.29350 0.85093 0.76580 0.78314 0.79886 1.18791 1.22543 1.22121 1.20833 0.97134 0.93052 0.84759 0.93117 1.22021 1.02361 0.95572 1.00811 1.46017 1.26429 1.56445 1.07119 1.21431 0.84288 0.79343 0.85739 1.90725 1.25124 1.45141 1.86416 1.21526 1.00963 1.04509 0.89111 1.21149 0.99402 1.01524 0.92025 1.23034 0.93643 1.02045 0.82660 1.86103 1.50119 1.73511 1.15657 1.19347 0.95208 0.97228 0.84995 1.21554 0.95470 1.01571 1.01691 1.21515 1.00510 0.97148 0.90996 1.21378 0.93375 0.99098 1.00812 1.21340 0.98942 0.98301 0.95272 1.17633 0.85174 1.02474 0.94432 1.91445 1.47188 1.77767 1.97096 0.93088 0.89984 0.93931 0.79082 0.94132 0.90616 0.93324 0.93285 0.74446 0.85097 0.84862 0.92324 0.92509 0.89231 0.89104 0.81977 0.81675 0.81800 0.82770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.64 9.01 71.98 0.65 -3.99 16 2 C 0.16 6.05 2.93 44.99 0.13 6.18 16 3 H 0.05 1.77 8.08 -2.39 -0.02 1.76 16 4 N -0.74 -36.16 5.03 -322.93 -1.63 -37.78 16 5 C -0.24 -12.89 9.93 84.03 0.83 -12.06 16 6 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.61 13.06 21.65 0.28 -59.33 16 9 Si 0.97 45.95 29.55 68.60 2.03 47.98 16 10 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 12 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 13 C 0.15 4.98 2.62 44.99 0.12 5.10 16 14 H 0.05 2.09 7.58 -2.39 -0.02 2.07 16 15 C -0.15 -5.03 9.00 71.98 0.65 -4.39 16 16 N -0.71 -16.63 4.99 -442.53 -2.21 -18.84 16 17 C 0.50 12.56 7.79 87.66 0.68 13.24 16 18 O -0.59 -21.69 15.65 -3.04 -0.05 -21.74 16 19 C -0.12 -1.55 5.70 29.85 0.17 -1.38 16 20 C -0.10 -1.85 4.87 30.59 0.15 -1.70 16 21 C 0.06 0.77 4.74 71.98 0.34 1.12 16 22 O -0.34 -7.34 10.00 -93.01 -0.93 -8.27 16 23 C 0.08 1.45 6.69 22.53 0.15 1.60 16 24 C -0.18 -1.97 9.04 22.36 0.20 -1.76 16 25 C -0.08 -0.58 10.04 22.26 0.22 -0.36 16 26 C -0.13 -0.99 10.04 22.28 0.22 -0.77 16 27 C -0.12 -1.56 10.02 22.30 0.22 -1.33 16 28 C 0.02 0.45 7.31 22.45 0.16 0.62 16 29 F -0.16 -4.03 17.11 44.97 0.77 -3.26 16 30 H 0.05 1.55 6.57 -2.39 -0.02 1.53 16 31 H 0.08 1.60 6.29 -2.39 -0.02 1.59 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.38 20.00 5.77 -92.71 -0.54 19.47 16 34 H 0.25 14.92 8.31 -92.71 -0.77 14.14 16 35 H 0.07 2.22 6.57 -2.39 -0.02 2.20 16 36 H 0.05 1.91 6.29 -2.39 -0.02 1.90 16 37 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.42 6.56 6.58 -92.71 -0.61 5.95 16 39 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 42 H 0.06 1.31 8.10 -2.38 -0.02 1.29 16 43 H 0.09 0.71 7.66 -2.39 -0.02 0.69 16 44 H 0.09 0.70 7.66 -2.39 -0.02 0.68 16 45 H 0.16 0.81 6.30 -2.91 -0.02 0.79 16 46 H 0.17 0.05 8.06 -2.91 -0.02 0.03 16 47 H 0.16 0.23 8.06 -2.91 -0.02 0.21 16 48 H 0.15 1.40 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -80.47 396.38 3.49 -76.98 By element: Atomic # 1 Polarization: 28.20 SS G_CDS: -0.16 Total: 28.05 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: 5.38 Total: -3.78 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -3.55 Total: -115.95 kcal Atomic # 8 Polarization: -29.03 SS G_CDS: -0.98 Total: -30.01 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.77 Total: -3.26 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -80.47 3.49 -76.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717442538.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.849 kcal (2) G-P(sol) polarization free energy of solvation -80.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds